Integrated multi-omics analyses reveal microbial community resilience to fluctuating low oxygen in the East China sea.

Climate change and eutrophication are accelerating ocean deoxygenation, leading to a global decline in oxygen levels. The East China Sea, frequently experiencing deoxygenation events, harbors diverse microbial communities. However, the response of these communities to the changing deoxygenation dynamics remains poorly understood. Here, we explored the composition and function of microbial communities inhabiting seawaters of the Changjiang Estuary and offshore areas. Our findings suggested that neutral processes significantly influenced the assembly of these communities. The overall bacterial composition demonstrated remarkable high stability across the oxygen gradient. Salinity exhibited a significantly stronger correlation with bacterial community structure than dissolved oxygen. Both metagenomics and metaproteomics revealed that all of the samples exhibited similar functional community structures. Heterotrophic metabolism dominated these sites, as evidenced by a diverse array of transporters and metabolic enzymes for organic matter uptake and utilization, which constituted a significant portion of the expressed proteins. O2 was the primary electron acceptor in bacteria even under hypoxic conditions, evidenced by expression of low- and high-affinity cytochrome oxidases. Proteins associated with anaerobic processes, such as dissimilatory sulfite reductases, were virtually undetectable. Untargeted liquid chromatography with tandem mass spectrometry analysis of seawater samples revealed a diverse range of dissolved organic matter (DOM) components in amino acids, lipids, organic acids, peptides, and carbohydrates, potentially fueling dominant taxa growth. Despite fluctuations in the abundance of specific genera, the remarkable similarity in community structure, function, and DOM suggests that this ecosystem possesses robust adaptive mechanisms that buffer against abrupt changes, even below the well-defined hypoxic threshold in marine ecosystem.

The impact of organic carbon mineralization on pollution and toxicity of toxic metal in sediments: Yellow Sea and East China Sea study.

Organic carbon mineralization is the main driving force of metal migration and transformation in sediments, greatly influencing the distribution, pollution degree, and toxicity of toxic metals. However, relevant research on this subject is still limited. In this study, the concentration of toxic metals (Cr, Cd, Cu, Pb, Zn, Co, Fe, Mn, Ni, As) in the solid and liquid phase (porewater) of sediments were measured, toxic metal pollution degree and toxicity of the Yellow Sea (YS) and the East China Sea (ECS) were assessed. Combined with the rate of organic carbon mineralization, the impact of organic carbon mineralization was analyzed. The results showed that Ni was slightly enriched and posed a certain ecological risk, and As was moderately enriched in the studied area, Pb was at a moderate pollution level in the studied area. Zn, Co, Mn, and Fe were at a moderate pollution level in the mud area of SYS and the west coastal area of ECS. Additionally, the total organic carbon mineralization rate (TCMR) in the ECS (5.12-18.04 mmol C m-2 d-1) was slightly higher than that in the YS (3.29-14.46 mmol C m-2 d-1) during spring. Moreover, organic carbon mineralization promotes metal enrichment, and the TCMR was significantly correlated with the pollution load index. Thus, TCMR can be used as an indicator to predict the degree of metal pollution. Furthermore, organic carbon mineralization promotes the mobilization of Cu from the solid phase to the liquid phase, while facilitating the transfer of Cr, Pb, Co, Ni, and Fe from the liquid phase to the solid phase. This process increases the potential risks of Cu and reduces the toxicity of Cr, Pb, Co, Ni, and Fe. Therefore, the impact of organic carbon mineralization should be considered in future assessments and predictions of toxic metal pollution and toxicity.

Environmental gradients shape microbiome assembly and stability in the East China sea.

Microbiomes play a key role in marine ecosystem functioning and sustainability. Their organization and stability in coastal areas, particularly in anthropogenic-influenced regions, however, remains unclear compared with an understanding of how microbial community shifts respond to marine environmental gradients. Here, the assembly and community associations across vertical and horizontal gradients in the East China Sea are systematically researched. The seawater microbial communities possessed higher robustness and lower fragmentation and vulnerability compared to the sediment microbiomes. Spatial gradients act as a deterministic filtering factor for microbiome organization. Microbial communities had lower phylogenetic distance and higher niche breadth in the nearshore and offshore areas compared to intermediate areas. The phylogenetic distance of microbiomes decreased from the surface to the bottom but the niche breadth was enhanced in surface and bottom environments. Vertical gradients destabilized microbial associations, while the community diversity was enhanced. Multivariate regression tree analysis and canonical correspondence analysis indicated that depth, distance from shore, nutrient availability, temperature, salinity, and chlorophyll a, affected the distribution and co-occurrence of microbial groups. Our results highlight the crucial roles of environmental gradients in determining microbiome association and stability. These results improve our understanding of the survival strategies/adaptive mechanisms of microbial communities in response to environmental variation and provide new insights for protecting the ecosystems and maintaining the sustainability of ecological functions.

Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea.

A Gram-stain-negative bacterial strain, designated as E165T, was isolated from a tidal flat sediment of the East China Sea. Strain E165T grew optimally at pH 6, at 32 °C and with 1-2 % (w/v) NaCl. The 16S rRNA gene sequence similarity results revealed that strain E165T was most closely related to Marinomonas rhizomae IVIA-Po-145T, Marinomonas polaris CK13T, Marinomonas foliarum IVIA-Po-155T, Marinomonas hwangdonensis HDW-15T, Marinomonas pontica 46-16T, Marinomonas mangrovi B20-1T and Marinomonas shanghaiensis DSL-35T with values of 97.0-98.5 %. The digital DNA-DNA hybridization and average nucleotide identity values between strain E165T and the reference strains were 21.9-34.3 % and 77.6-87.3 %, respectively. The DNA G+C content of the isolate was 42.9 mol%. Strain E165T contained Q-8 as the sole ubiquinone and C16 : 0, summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c) and summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) as the major fatty acids. The major polar lipids of strain E165T were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminolipid and aminophospholipid. On the basis of phenotypic characteristics, phylogenetic analysis and DNA-DNA relatedness, a novel species, Marinomonas lutimaris sp. nov., is proposed with E165T (=MCCC 1K06241T=KCTC 82809T) as the type strain.

The complete mitochondrial genome of Crassostrea hongkongensis from East China Sea indicates species' range may extend northward.

BACKGROUND: Crassostrea hongkongensis is an important mariculture shellfish with a relatively narrow distribution range. Recently, larger wild oysters were identified as C. hongkongensis from Sanmen bay in East China Sea. No natural distribution had been reported for this species here, and its origin remains unknown. METHODS AND RESULTS: We assembled the complete 18,617 bp circular mitochondrial genome of C. hongkongensis from Sanmen bay by next generation sequencing. It included 12 protein-coding genes, 23 tRNAs, and two rRNAs. The A/T content of the mitogenome was higher than its G/C content. Similar values and features were previously found for five other specimens of C. hongkongensis, and were comparable to those of other congeneric species. A phylogenetic analysis based on the 12 protein-coding genes and complete mitochondrial sequence indicated that the six specimens of C. hongkongensis formed a monophyletic group and shared a sister group relationship with C. ariakensis, C. nippona, C. sikamea, C. angulata, C. gigas, and C. iredalei, whereas specimens from the Sanmen bay area clustered later with the five other C. hongkongensis individuals, sharing a sub-clade. The newly sequenced mitogenome had more singleton sites than previously published C. hongkongensis mitogenomes. CONCLUSIONS: Crassostrea hongkongensis may be a native species, and the species' range extends further to the north than previously known. Our data may therefore contribute to a better understanding of the species diversity and conservation of Crassostrea oysters.

Polycyclic aromatic hydrocarbons in sediment-porewater system from the East China Sea: Occurrence, partitioning, and diffusion.

The distribution, partitioning behavior, and diffusion of polycyclic aromatic hydrocarbons (PAHs) within sediment-porewater system were determined in two cores obtained from the Min-Zhe coastal mud of the East China Sea (ECS). Depth profiles of apparently dissolved PAH levels exhibited greater variabilities, with their elevated levels at depth and a high abundance of two-to three-ring PAHs observed. These distribution and composition patterns were inconsistent with the corresponding sediment PAHs, indicating differences in controlling factors for PAHs present in the system. In addition to compound's hydrophobicity, low detection of heavier PAHs in porewater was possibly correlated with the sediment transport process, as indicated by a relatively high weathering ratio in southern Min-Zhe coastal mud. PAH sorption affinity to the collected core sediments exhibited a generally decreasing trend downcore, as expressed by sediment-porewater partition coefficients. This was consistent with the higher content of porewater PAHs in deep core sediment. The established sediment total organic carbon (TOC)-porewater partitioning profiles in cores were predicted with amorphous organic carbon (AOC)-, coal tar-, and TOC-based distribution models, suggesting a dominant nonlinear sorption of PAHs to AOC. Through activity determinations, PAH diffusion within porewater was elucidated, with significant upward and downward mass transfer for PAHs occurring in both cores. The upward diffusion in the core collected from northern Min-Zhe coastal mud was in significant association with sediment TOC. This suggests that sediment TOC (especially AOC)-desorption of lighter PAHs into porewater, and therefore the possibility of their participation in environmental cycling. Baseline toxicity potential and toxic unit calculations indicated a relatively low exposure risk for benthic organisms to porewater PAHs.

Reduced lifetime fitness (growth, body condition and survivability) of hatchery-reared tiger pufferfish Takifugu rubripes compared to wild counterparts.

Tiger pufferfish Takifugu rubripes (order Tetraodontiformes, family Tetraodontidae) is a highly exploited species and stocks continue to decline, although hatchery-reared juveniles have been released since 1965 for stock enhancement. To determine why the stock has not recovered through hatchery-release practices, this study investigated and compared the population characteristics of wild and hatchery-origin fish. The length-mass relationship showed that hatchery-origin fish were skinnier, with males weighing less than 90% of the mass of wild males of the same length. The hepatosomatic index tended to be lower in hatchery-origin fish. Age was estimated using the otolith-based method, and the estimates were more accurate and precise than those obtained by the conventional vertebra-based method. At the age of 2.9 years, an age at which specimens were the most abundant in catches, hatchery-origin males weighed only 67% of wild males. The maximum observed age was 12 years for wild fish and 5 years for hatchery-origin fish. The instantaneous total mortality rates of hatchery-origin fish were more than twice as high as those of wild fish. In summary, the hatchery-origin fish had poor health status, poor growth and high mortality, and their fitness in natural environments was therefore hypothesized to be low throughout life.

Long-term spatial variation of algal blooms extracted using the U-net model from 10 years of GOCI imagery in the East China Sea.

Long-term satellite missions could help to provide insights into spatial and temporal variations in algal blooms. However, the traditional reflectance-based method has limitations in regards to determining the available threshold for algal bloom detection among the time-varying observation conditions. In terms of extracting useful information from long-term data series precisely and efficiently, the deep learning method has shown its superiority over traditional algorithms in batch data processing. In this study, a U-net model for algal bloom extraction along the coast of the East China Sea was developed using GOCI images. The U-net model was trained with two different datasets that were constructed with six-band channels (all visible bands from GOCI imagery) and RGB-band channels (bands of 443, 555, and 680 nm from GOCI imagery). The quantitative assessment from the U-net models suggests that the U-net model trained with the six-band channel datasets outperformed the RGB-band channel datasets, with increases of 23.6%, 18.1%, and 12.5% in terms of accuracy, precision, and F-score, respectively. The validation map derived from the U-net model trained with six-band channel datasets also showed considerable matching with the ground-truth maps. By using the U-net model, the occurrence of algal blooms was automatically extracted from GOCI images. A 10-year time series of GOCI data collected between 2011 and 2020 was derived using an output-trained U-net model to explore spatial variation along the coast of the ECS. It was found that the most affected areas of the algal blooms varied by year, but were mainly located in the Zhoushan and Zhejiang coasts. Additionally, by performing principal component analysis on the daily meteorological data during April and August 2011-2020, factors related to algal bloom occurrence were discussed.

Occurrence, congener patterns, and potential ecological risk of chlorinated paraffins in sediments of Yangtze River Estuary and adjacent East China Sea.

Chlorinated paraffins (CPs) are high production volume chemicals with immense scientific research interest due to their wide distribution, persistence, toxicity, and bioaccumulation potential. In this study, 87 surface sediments were collected from the Yangtze River Estuary (YRE) and the adjacent East China Sea (ECS). We investigated the concentrations, spatial distribution, and composition profiles of short-chain chlorinated paraffins (SCCPs) and medium-chain chlorinated paraffins (MCCPs) using ultra-high-performance liquid chromatography coupled with Orbitrap Fusion Tribrid mass spectrometry. The sedimentary concentrations of SCCPs and MCCPs ranged from 2.85 to 94.7 ng·g-1 (median 13.7 ng·g-1) and 3.33 to 77.8 ng·g-1 (median 13.3 ng·g-1), respectively. Higher CP concentrations were found in YRE sediments. The values decreased away from the location, implying a direct influence of the Yangtze River. The SCCP concentrations were higher than those of MCCPs in most sediment samples. Overall, the predominant homologs were C13Cl5-7 and C14Cl6-8 for MCCPs and SCCPs, respectively. Overall, the sediment-dwelling organisms in the region are susceptible to low ecological risks.

A New Species of Sea Whip Gorgonian-Associated Zoantharian (Cnidaria: Anthozoa: Hexacorallia: Parazoanthidae) from the Ryukyu Islands, Japan, with Subgeneric Subdivision of Genus Umimayanthus.

Symbioses between invertebrates are common in the ocean although usually the diversity and specificity of their interactions are not well understood. Parazoanthidae (Cnidaria: Anthozoa: Zoantharia) is one of the most diverse zoantharian families in terms of numbers of genera and species. Species in this family are commonly associated with various other invertebrates that they utilize as their substrate. Previous studies have re-organized the taxonomy of Parazoanthidae and revealed a strong specificity between many parazoanthid species and genera and their substrates. However, our understanding of the species diversity of Parazoanthidae is far from complete, as parazoanthids are often overlooked in sampling surveys. In this study, we establish three subgenera under the genus Umimayanthus Montenegro, Sinniger, and Reimer, 2015; the nominotypical Umimayanthus, Paraumimayanthus subgen nov., and Gorgoniazoanthus subgen. nov., based on the finding of a new species, Umimayanthus (Gorgoniazoanthus) kanabou sp. nov., associated with the sea-whip gorgonian Ellisella sp. from approximately 30 m depth in shallow mesophotic coral reef communities in Oura Bay on Okinawajima Island and in Oshima Strait near Amami-Oshima Island, in the Ryukyu Islands, southern Japan. We additionally report on gastropods and crustaceans observed in association with U. kanabou, and these species are thought to potentially prey upon the zoantharians or on gorgonian polyps. Umimayanthus kanabou is phylogenetically closely related to congeneric sponge-associated Umimayanthus spp., further supporting the recent hypothesis that substrate preferences may change during the evolutionary history of zoantharians.

Modeling the sources and retention of phosphorus nutrient in a coastal river system in China using SWAT.

The Soil Water Assessment Tool (SWAT) was used for exploring the sources and retention dynamics of phosphorus nutrient in the river system of the Yong River Basin, China. The performance of the SWAT model was assessed. The retention dynamics of phosphorus nutrient in the river continuum and the factors contributing to those patterns were studied. The results showed that an average of 1828 tons of TP entered the river network of the Yong River Basin annually and in-stream processes trapped 1161 tons yr-1 of TP in the watercourse, which accounted for 63.5% of the annual TP inputs. The TP retention rates in the river network ranged from 3.08 to 63.43 mg m-2 day-1. An average of 666.9 tons of TP was delivered from the estuary to the East China Sea annually. The unit area riverine exports of TP ranged from 102.21 to 244.00 kg km-2 yr-1. The river network is a net sink for TP and is going through a phosphorus accumulation phase. The results confirm that the river system has a considerable phosphorus retention capacity that is highly variable on a spatiotemporal scale. Because of the cumulative effect of continued phosphorus removal along the entire flow path, the retention fractions of phosphorus removed from all streams at the basin scale is considerably higher than that of an individual river portion. The variations of hydrological regimes, water surface area, unit area inputs of phosphorus, and the concentrations of suspended sediments have a great influence on phosphorus retention.

Diverse and unique viruses discovered in the surface water of the East China Sea.

BACKGROUND: Viruses are the most abundant biological entities on earth and play import roles in marine biogeochemical cycles. Here, viral communities in the surface water of the East China Sea (ECS) were collected from three representative regions of Yangshan Harbor (YSH), Gouqi Island (GQI), and the Yangtze River Estuary (YRE) and explored primarily through epifluorescence microscopy (EM), transmission electron microscopy (TEM), and metagenomics analysis. RESULTS: The virus-like particles (VLPs) in the surface water of the ECS were measured to be 106 to 107 VLPs/ml. Most of the isolated viral particles possessed a head-and-tail structure, but VLPs with unique morphotypes that had never before been observed in the realm of viruses were also found. The sequences related to known viruses in GenBank accounted for 21.1-22.8% of the viromic datasets from YSH, GQI, and YRE. In total, 1029 viral species were identified in the surface waters of the ECS. Among them, tailed phages turn out to make up the majority of viral communities, however a small number of Phycodnaviridae or Mimiviridae related sequences were also detected. The diversity of viruses did not appear to be a big difference among these three aquatic environments but their relative abundance was geographically variable. For example, the Pelagibacter phage HTVC010P accounted for 50.4% of the identified viral species in GQI, but only 9.1% in YSH and 11.7% in YRE. Sequences, almost identical to those of uncultured marine thaumarchaeal dsDNA viruses and magroviruses that infect Marine Group II Euryarchaeota, were confidently detected in the ECS viromes. The predominant classes of virome ORFs with functional annotations that were found were those involved in viral biogenesis. Virus-host connections, inferred from CRISPR spacer-protospacer mapping, implied newly discovered infection relationships in response to arms race between them. CONCLUSIONS: Together, both identified viruses and unknown viral assemblages observed in this study were indicative of the complex viral community composition found in the ECS. This finding fills a major gap in the dark world of oceanic viruses of China and additionally contributes to the better understanding of global marine viral diversity, composition, and distribution.

Vibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea.

Two Gram-stain-negative, catalase- and oxidase-positive, facultative anaerobic and rod-shaped motile bacteria, designated strains BEI176T and BEI207T, were isolated from seawater collected in the East China Sea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains BEI176T and BEI207T belonged to the genus Vibrio and were closely related to each other with 98.18 % similarity. The closest phylogenetic relatives of strain BEI176T were Vibrio alginolyticus LMG 4409T (98.85 %) and Vibrio campbellii LMG 11216T (98.81 %), whereas the closest relative of strain BEI207T was Vibrio hepatarius LMG 20362T (98.64 %). The two strains showed growth at different conditions; while strain BEI176T grew at 16-37 °C, pH 5.0-9.5 and 0-7.0 % (w/v) NaCl, the growth of strain BEI207T occurred at 10-37 °C, pH 6.0-9.5 and 1.0-7.0 % (w/v) NaCl. Both strains shared the same major fatty acid components of summed feature 3 (C16 : 1ω7c or C16 : 1ω6c), C16 : 0 and summed feature 8 (C18 : 1ω6c or C18 : 1ω7c). The DNA G+C contents of the assembled genomic sequences were 44.73 and 45.06 mol% for strains BEI176T and BEI207T, respectively. Average nucleotide identity values between the two strains and their reference species were lower than the threshold for species delineation (95-96 %); in silico DNA-DNA hybridization further showed that the two strains had less than 70 % similarity to their relatives. Therefore, two novel Vibrio species are proposed to accommodate them: Vibrioouci sp. nov. (type strain, BEI176T=MCCC 1K03515T=JCM 32690T= KCTC 62616T) and Vibrioaquaticus sp. nov. (type strain, BEI207T=MCCC 1K03516T=JCM 32691T=KCTC 62617T).

Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov., two marine bacteria isolated from the East China Sea.

Two Gram-staining-negative, facultatively anaerobic, motile, short clavate and flagellated marine bacteria, designated strains BEI233T and LJC006T, were isolated from the East China Sea. On the basis of the results of 16S rRNA gene sequencing and multilocus sequence analysis, BEI233T and LJC006T should be assigned to the genus Vibrio. The closest phylogenetic relatives of BEI233T are Vibrio scophthalmi LMG 19158T (98.7 % 16S rRNA gene sequence pairwise similarity), Vibrio ichthyoenteri DSM 14397T (98.5 %), Vibrio renipiscarius KCTC 42287T (97.7 %), Vibrio aestuarianus ATCC 35048T (97.3 %) and Vibrio thalassae MD16T (96.5 %), whereas for LJC006T they were Vibrio furnissii CAIM 518T (97.1 %), Vibrio fluvialis LMG 7894T (97.0%), Vibrio tritonius JCM 16456T (96.9 %) and Vibrio xuii LMG 21346T (96.1 %). The growth of BEI233T occurred at 10-37 °C, pH 5.0-8.0 and with 1-7 % (w/v) NaCl, while the growth of LJC006T occurred at 10-37 °C, pH 6.0-9.0, and 0-8 % (w/v) NaCl. The predominant fatty acids (>10 %) were summed feature 3 (C16 : 1ω7c or/and C16 : 1ω6c), C16 : 0 and summed feature 8 (C18 : 1ω7c or/and C18 : 1ω6c), with different proportions. The DNA G+C contents of BEI233T and LJC006T are 42.41 mol% and 41.88 mol%, respectively. On the basis of the results of polyphasic analysis, BEI233T and LJC006T are considered to represent novel species of the genus Vibrio, for which the names Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov. are proposed. The type strains are BEI233T (=JCM 32692T=KCTC 62618T) and LJC006T (=JCM 32693T=KCTC 62620T), respectively.

Alkaline phosphatase activities and regulation in three harmful Prorocentrum species from the coastal waters of the East China Sea.

Harmful blooms of Prorocentrum donghaiense occur annually in the phosphorus-scarce coastal waters of the East China Sea (ECS). The enzymatic activities of alkaline phosphatase (AP) and its regulation by external phosphorus were studied during a P. donghaiense bloom in this area. The AP characteristics of P. donghaiense was further compared with Prorocentrum minimum and Prorocentrum micans in monocultures with both bulk and single-cell enzyme-labeled fluorescence AP assays. Concentrations of dissolved inorganic phosphorus (DIP) varied between 0.04 and 0.73 µmol l-1, with more than half recording stations registering concentrations below 0.10 µmol l-1. Concentrations of dissolved organic phosphorus (DOP) were comparable or even higher than those of DIP. P. donghaiense suffered phosphorus stress and expressed abundant AP, especially when DIP was lower than 0.10 µmol l-1. The AP activities showed a negative correlation with DIP but a positive correlation with DOP. The AP activities were also regulated by internal phosphorus pool. The sharp increase in AP activities was observed until cellular phosphorus was exhausted. Most AP of P. donghaiense was located on the cell surface and some were released into the water with time. Compared with P. minimum and P. micans, P. donghaiense showed a higher AP affinity for organic phosphorus substrates, a more efficient and energy-saving AP expression quantity as a response to phosphorus deficiency. The unique AP characteristic of P. donghaiense suggests that it benefits from the efficient utilization of DOP, and outcompete other species in the phosphorus-scarce ECS.

DMSP-Producing Bacteria Are More Abundant in the Surface Microlayer than Subsurface Seawater of the East China Sea.

Microbial production and catabolism of dimethylsulfoniopropionate (DMSP), generating the climatically active gases dimethyl sulfide (DMS) and methanethiol (MeSH), have key roles in global carbon and sulfur cycling, chemotaxis, and atmospheric chemistry. Microorganisms in the sea surface microlayer (SML), the interface between seawater and atmosphere, likely play an important role in the generation of DMS and MeSH and their exchange to the atmosphere, but little is known about these SML microorganisms. Here, we investigated the differences between bacterial community structure and the distribution and transcription profiles of the key bacterial DMSP synthesis (dsyB and mmtN) and catabolic (dmdA and dddP) genes in East China Sea SML and subsurface seawater (SSW) samples. Per equivalent volume, bacteria were far more abundant (~ 7.5-fold) in SML than SSW, as were those genera predicted to produce DMSP. Indeed, dsyB (~ 7-fold) and mmtN (~ 4-fold), robust reporters for bacterial DMSP production, were also far more abundant in SML than SSW. In addition, the SML had higher dsyB transcripts (~ 3-fold) than SSW samples, which may contribute to the significantly higher DMSP level observed in SML compared with SSW. Furthermore, the abundance of bacteria with dmdA and their transcription were higher in SML than SSW samples. Bacteria with dddP and transcripts were also prominent, but less than dmdA and presented at similar levels in both layers. These data indicate that the SML might be an important hotspot for bacterial DMSP production as well as generating the climatically active gases DMS and MeSH, a portion of which are likely transferred to the atmosphere.

Photobacterium chitinilyticum sp. nov., a marine bacterium isolated from seawater at the bottom of the East China Sea.

A Gram-stain-negative, facultative aerobic, motile by a polar flagellum, rod-shaped strain, designated BEI247T, was isolated from seawater at the bottom of the East China Sea. Phylogenetic analysis of the 16S rRNA gene and whole genome data affiliated it with the genus Photobacterium. It was most closely related to Photobacterium alginatilyticum P03D4T (97.36 % 16S rRNA gene similarity). Multi-locus sequence analysis (MLSA) revealed a distinct lineage with P. alginatilyticum P03D4T as its closest relative. Strain BEI247T was found to have lower than 86.0 % similarities to the type strains of its most closely related species in MLSA, less than 82.3 % using genome average nucleotide identities, and less than 25.3 % in DNA-DNA relatedness studies. Growth occurred at 10-37 °C (optimum, 24 °C), pH 5.0-8.0 (pH 7.0) and in the presence of 1-5 % (w/v) NaCl (3 %). The dominant fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and C16 : 0. The polar lipids of strain BEI247T comprised phosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, two phospholipids and one unknown lipid. The major respiratory quinone was ubiquinone-8 (Q-8). The DNA G+C content of strain BEI247T was 46.45 mol%. On the basis of the polyphasic evidence, strain BEI247T is proposed as representing a novel species of the genus Photobacterium, for which the name Photobacterium chitinilyticum sp. nov. is proposed. The type strain is BEI247T (=JCM 32689T=MCCC 1K03517T=KCTC 62619T).

Occurrence and origins of biomarker aliphatic hydrocarbons and their indications in surface sediments of the East China Sea.

The composition, distribution, indexes and budget of saturated lipid biomarker aliphatic hydrocarbons (AHs) in sediments of the East China Sea (ESC) were analyzed to identify their indications and sources. The resolved n-alkane (R) contents were 0.70-2.89 µg/g, with long-chain n-alkanes as the dominant composition in the ECS. The high R values mainly appeared at south inner shelf and north outer upwelling area, corresponding to the high mud, total organic carbon (TOC) and Chl a contents there. The composition, distribution pattern, combined with indexes of AHs, suggested no petroleum contamination and predominant biogenic sources in the ECS. The biogenic sources mainly were the mixed terrestrial higher plant, marine plankton and bacteria and aquatic macrophyte origins. Biotic source apportionment suggested that terrestrial higher plants were the dominant source of AHs, followed by marine planktons, with the lowest of submerged/floating macrophytes. Quantitative evaluation of R sources suggested that the Changjiang River input was the primary terrestrial contributor, accounting for 67.9% of total terrestrial input. The burial flux of R was 1.11 × 103 t/yr, with inner shelf and estuary as main accumulation areas. Although there was a huge amount of R influx from terrestrial and marine sources, only 9.8% could be preserved in sediments.

Variation of Suspended Particles in the Bottom Layer of the East China Sea with Data from Seafloor Observatory.

The in situ scattering and transmissometry laser (LISST-100X), equipped with an acoustic wave and current (AWAC) meter and conductivity, temperature, and depth (CTD) instruments over the seabed in the East China Sea, was used to monitor the variation in suspended particles in the bottom sea layer, including particle size distribution (PSD) and volume concentration. The power law approximation was tested to describe the variability in PSD based on the field data. The results show that the power law was robust in processing continuous data, accompanied with the same optimal reference particle size (~63 µm) and little change in the corresponding exponent (~3.4) in both periods. Suspended particles were divided into three types: macroflocs (>133 µm), microflocs (36-133 µm), and single grains (<36 µm). Particle sizes were coarse during the two seasons, with macroflocs representing more than 60% of all the suspended particles, especially in February, when the particle size spectra were usually open-ended. Results from the harmonic analysis method indicate that tidal-induced resuspension and advection are the major reasons for the diurnal dynamics of sediments. Due to the tidal asymmetry in the region, we only found one mode in volume concentration at the moment of maximum velocity. However, the ratios of macroflocs were bimodal, with maximum floods and ebbs in one tidal cycle in February, when the higher mode at the maximum ebbs may be contributed to by the flocculation of finer particles considering the decreasing ratios of finer particles. Due to the enhanced stratification and the clean barrier built up by the Taiwan Warm Current in the southeast corner, the significant daily variation in suspended particles observed in February weakened in September. The influence of waves was uncertain, although the correlation coefficient between significant wave height and volume concentration was about 64% in February.

Occurrence and distribution of antibiotic resistance genes in the sediments of the East China Sea bays.

The coastal area of the East China Sea has experienced rapid urbanization and industrialization in China since 1980s, resulting in severe pollution of its environments. Antibiotic resistance genes (ARGs) are regarded as a kind of emerging pollutant with potential high risk. The sediment samples were collected from Hangzhou Bay (HB), Xiangshan Bay (XB), and Taizhou Bay (TB) to investigate the spatial occurrence and distribution of 27 ARGs and class I integron-integrase gene (intI1) in the coastal area of the East China Sea. The PCR results showed the frequent presence of 11 ARGs and intI1 in the sediments of the three bays. The qPCR results further showed that sulfonamide resistance was the most prevalent ARG type and antibiotic target replacement and protection were the most important resistance mechanisms in the sediments. Regarding the subtype of ARGs, sulI, tetW, and dfrA13 were the most abundant ARGs, in which sulI was higher in TB (based on both the absolute and relative abundances) and dfrA13 was higher in HB (based on the relative abundances). The network analysis revealed that intI1 had significant correlations with tetC, sulI, sulII, and blaPSE-1. Oil was the key connected factor, which had positive connections with sulI, sulII, and blaPSE-1. In addition, the joint effect of heavy metals and nutrients & organic pollutants might be crucial for the fate of ARGs in the coastal sediments.