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1.
Proc Natl Acad Sci U S A ; 121(36): e2404472121, 2024 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-39190358

RESUMO

Deprotonation or suppression of the pKa of the amino group of a lysine sidechain is a widely recognized phenomenon whereby the sidechain amino group transiently can act as a nucleophile at the active site of enzymatic reactions. However, a deprotonated lysine and its molecular interactions have not been directly experimentally detected. Here, we demonstrate a deprotonated lysine stably serving as an "acceptor" in a H-bond between the photosensor protein RcaE and its chromophore. Signal splitting and trans-H-bond J coupling observed by NMR spectroscopy provide direct evidence that Lys261 is deprotonated and serves as a H-bond acceptor for the chromophore NH group. Quantum mechanical/molecular mechanical calculations also indicate that this H-bond exists stably. Interestingly, the sidechain amino group of the lysine can act as both donor and acceptor. The remarkable shift in the H-bond characteristics arises from a decrease in solvation, triggered by photoisomerization. Our results provide insights into the dual role of this lysine. This mechanism has broad implications for other biological reactions in which lysine plays a role.


Assuntos
Ligação de Hidrogênio , Lisina , Lisina/química , Lisina/metabolismo , Prótons , Modelos Moleculares , Espectroscopia de Ressonância Magnética
2.
Chemphyschem ; 25(5): e202300963, 2024 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-38215244

RESUMO

We will discuss, with the help of few selected examples, how the concept of through-space scalar spin-spin coupling between non covalently bonded nuclei has evolved in recent years. We will first present systems where 'no covalent bond' actually means that the two atoms are separated by a large number of bonds; then we will see cases where it is referred to true van der Waals dimers, but with the two atoms somehow constrained in their positions; we will finish with the most recent examples of liquids and even gaseous mixtures with full translational degrees of freedom in a regime of intermolecular/interatomic fast exchange.

3.
Magn Reson Med ; 90(6): 2217-2232, 2023 12.
Artigo em Inglês | MEDLINE | ID: mdl-37496253

RESUMO

PURPOSE: Measuring lipid composition provides more information than just total lipid content. Hence, the non-invasive measurement of unsaturated lipid protons with both high efficiency and precision is of pressing need. This study was to optimize echo time (TE) for the best resolving of J-difference editing of unsaturated lipid resonances. METHODS: The TE dependence of J-difference-edited (JDE) MRS was verified in the density-matrix simulation, soybean oil phantom, in-vivo experiments of white adipose tissue (WAT), and skeletal muscles using single-voxel MEGA-PRESS sequence at 3T. The peak SNRs and Cramér-Rao lower bounds (CRLBs) acquired at the proposed TE of 45 ms and previously published TE of 70 ms were compared (eight pairs) in WAT, extramyocelluar lipids (EMCLs), and intramyocellular lipids (IMCLs). The lipid composition in skeletal muscles was compared between healthy males (n = 7) and females (n = 7). RESULTS: The optimal TE was suggested as 45 ms. Compared to 70 ms, the mean signal gains at TE of 45 ms were 151% in WAT, 168% in EMCL, 204% in IMCL for allylic resonance, and 52% in EMCL for diallylic resonance. CRLBs were significantly reduced at TE of 45 ms in WAT, EMCL, IMCL for allylic resonance and in EMCL for diallylic resonance. With TE of 45 ms, significant gender differences were found in the lipid composition in EMCL pools, while no difference in IMCL pools. CONCLUSION: The JDE-MRS protocol with TE of 45 ms allows improved quantification of unsaturated lipid resonances in vivo and future lipid metabolism investigations.


Assuntos
Músculo Esquelético , Prótons , Masculino , Feminino , Humanos , Espectroscopia de Ressonância Magnética/métodos , Músculo Esquelético/diagnóstico por imagem , Imagens de Fantasmas , Lipídeos
4.
Chemphyschem ; 24(11): e202200923, 2023 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-36916823

RESUMO

Small perfluorocycloalkanes (hexafluorocyclopropane (c-C3 F6 ), octafluorocyclobutane (c-C4 F8 ) and decafluorocyclopentane (c-C5 F10 ) and cage-shaped perfluoroalkanes (perfluoro tetrahedral alkane (C4 F4 ), perfluoro prismane (C6 F6 ) and perfluoro cubane (C8 F8 )) are better electron scavengers. The captured excess electrons are weakly bound inside their backbone voids or over their backbones, forming the solvated electron ( e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ ) systems (e@c-Cn F2n s (n=3, 4, 5) and e@Cn Fn (n=4, 6, 8)). There have been many studies on the structures and properties of such e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ systems. However, the effect of e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ on the indirect nuclear spin-spin coupling (J-coupling) is unknown. In this work, we explore how e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ affects Ne J-coupling between two coupled F nuclei (Ne JFF -coupling) in perfluoroalkane e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ systems through density functional theory calculations. We find unusual trans-Ne JFF -couplings (two coupled F nuclei in trans-position) in e@c-Cn F2n (n=3, 4, 5) and Ne JFF -couplings in e@Cn Fn (n=4, 6, 8). One excess electron not only changes the molecular structures, but also enforces unique distributions and properties, depending on the structural characteristics. We also confirm that such unusual Ne JFF -couplings are realized by through- e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ (T-SE) transmission mechanism, rather than the conventional through-bonds (T-B)/through-space (T-S) ones. The novel transmission mechanism consists of the T-SE coupling path (path 1) and e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ -enhanced T-B ⊕ ${ \oplus }$ T-S coupling path (path 2), and the two paths jointly control Ne JFF through cooperation and competition. Interestingly, the former plays a dominant role for long-range Ne JFF -coupling (N=5), while the latter plays a role in the short-range Ne JFF -coupling (N=3, 4). Path bending angle mainly influences path 1, while path 2 is mainly influenced by the path length. This work not only provides novel insights into the mediating role of e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ in the coupling information exchange, but also proposes a new e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ -based coupling mechanism, possibly opening up potential applications for the e sol - ${{\rm{e}}_{{\rm{sol}}}^- }$ -based indirect nuclear spin couplings.

5.
Int J Mol Sci ; 23(10)2022 May 18.
Artigo em Inglês | MEDLINE | ID: mdl-35628453

RESUMO

The Flory isolated pair hypothesis (IPH) is one of the corner stones of the random coil model, which is generally invoked to describe the conformational dynamics of unfolded and intrinsically disordered proteins (IDPs). It stipulates, that individual residues sample the entire sterically allowed space of the Ramachandran plot without exhibiting any correlations with the conformational dynamics of its neighbors. However, multiple lines of computational, bioinformatic and experimental evidence suggest that nearest neighbors have a significant influence on the conformational sampling of amino acid residues. This implies that the conformational entropy of unfolded polypeptides and proteins is much less than one would expect based on the Ramachandran plots of individual residues. A further implication is that the Gibbs energies of residues in unfolded proteins or polypeptides are not additive. This review provides an overview of what is currently known and what has yet to be explored regarding nearest neighbor interactions in unfolded proteins.


Assuntos
Proteínas Intrinsicamente Desordenadas , Peptídeos , Aminoácidos/química , Entropia , Proteínas Intrinsicamente Desordenadas/química , Conformação Molecular , Peptídeos/química
6.
Magn Reson Med ; 85(3): 1522-1539, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33058240

RESUMO

PURPOSE: Imaging of [2-13 C]lactate, a metabolic product of [2-13 C]pyruvate, is over considerable interest in hyperpolarized 13 C studies. However, artifact-free imaging of a J-coupled nuclear spin species can be challenging due to the peak-splitting induced by the spin-spin interactions. In this work, two new techniques resolving these J-modulated artifacts are presented. THEORY AND METHODS: The Product Operator Formalism (POF) of density matrix theory is used to both numerically and analytically derive the coherences arising during radiofrequency excitation and readout of a J-coupled spin system. A combination of computer simulations and experiments with [2-13 C]lactate and 13 C-formate phantoms are then used to verify the performance of two imaging methods. In the first approach, a quadrature imaging technique is used to eliminate scalar coupling artifacts via the combination of in-phase and quadrature images acquired at echo times differing by 1/2J with an echoplanar readout. The second approach employs a highly narrowband RF excitation pulse to image a single peak from the J-coupled doublet. RESULTS: Simulations using a numerical Shepp-Logan phantom, in vitro experiments using thermally polarized [2-13 C]lactate, thermally and hyperpolarized 13 C-formate phantoms, and in vivo imaging of [2-13 C]lactate produced in rat brain following injection of hyperpolarized [2-13 C]pyruvate show artifact-free images and demonstrate potential utility of these methods. CONCLUSION: The quadrature imaging and the narrowband excitation techniques resolve the J-coupling induced ghosting and blurring artifacts present with conventional MRI of J-coupled signals such as [2-13 C]lactate.


Assuntos
Artefatos , Ácido Láctico , Animais , Isótopos de Carbono , Imageamento por Ressonância Magnética , Imagens de Fantasmas , Ácido Pirúvico , Ratos
7.
NMR Biomed ; 34(5): e4129, 2021 05.
Artigo em Inglês | MEDLINE | ID: mdl-31313877

RESUMO

The aim of this study was to develop a novel software platform for the simulation of magnetic resonance spin systems, capable of simulating a large number of spatial points (1283 ) for large in vivo spin systems (up to seven coupled spins) in a time frame of the order of a few minutes. The quantum mechanical density-matrix formalism is applied, a coherence pathway filter is utilized for handling unwanted coherence pathways, and the 1D projection method, which provides a substantial reduction in computation time for a large number of spatial points, is extended to include sequences of an arbitrary number of RF pulses. The novel software package, written in MATLAB, computes a basis set of 23 different metabolites (including the two anomers of glucose, seven coupled spins) with 1283 spatial points in 26 min for a three-pulse experiment on a personal desktop computer. The simulated spectra are experimentally verified with data from both phantom and in vivo MEGA-sLASER experiments. Recommendations are provided regarding the various assumptions made when computing a basis set for in vivo MRS with respect to the number of spatial points simulated and the consideration of relaxation.


Assuntos
Simulação por Computador , Espectroscopia de Ressonância Magnética , Software , Adulto , Algoritmos , Creatinina/análise , Humanos , Ácido Láctico/análise , Reprodutibilidade dos Testes , Fatores de Tempo , Ácido gama-Aminobutírico/análise
8.
Chemphyschem ; 22(19): 1939-1946, 2021 10 05.
Artigo em Inglês | MEDLINE | ID: mdl-34291548

RESUMO

The antiphase character of the PHIP associated signals after a hydrogenation reaction is particularly sensitive to line broadening introduced by magnetic field inhomogeneities and interferences by the presence of resonance lines steaming from a large amount of thermally polarized spins. These obstacles impose a limitation in the detection of reaction products as well as in the experimental setups. A simple way to overcome these impediments consists of acquiring the signal with a train of refocusing pulses instead of a single r.f. pulse. We present here a number of examples where this multipulse acquisition, denominated PhD-PHIP, displays its potentiality in improving the information related to hyperpolarized spins performed in a sample, where the former parahydrogen nuclei are part of a complex J-coupling network.

9.
Chemphyschem ; 22(20): 2128-2137, 2021 10 14.
Artigo em Inglês | MEDLINE | ID: mdl-34324780

RESUMO

Nuclear magnetic resonance (NMR) spectroscopy usually requires high magnetic fields to create spectral resolution among different proton species. Although proton signals can also be detected at low fields the spectrum exhibits a single line if J-coupling is stronger than chemical shift dispersion. In this work, we demonstrate that the spectra can nevertheless be acquired in this strong-coupling regime using a novel pulse sequence called spin-lock induced crossing (SLIC). This techniques probes energy level crossings induced by a weak spin-locking pulse and produces a unique J-coupling spectrum for most organic molecules. Unlike other forms of low-field J-coupling spectroscopy, our technique does not require the presence of heteronuclei and can be used for most compounds in their native state. We performed SLIC spectroscopy on a number of small molecules at 276 kHz and 20.8 MHZ and show that the simulated SLIC spectra agree well with measurements.

10.
Magn Reson Chem ; 59(2): 117-137, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-32865833

RESUMO

A selection of acidic, alkaline and neutral degradation products relevant to the Chemical Weapons Convention was studied in wide range of pH conditions to determine their spin systems as well as spectral parameters. The pH dependence of chemical shifts and J couplings was parameterized using Henderson-Hasselbalch-based functions using dichloromethane as additional shift reference in TSP-d4 referenced spectra. The resulting parameters allowed calculation of precise chemical shifts and J coupling constants in arbitrary pH conditions. The validity of the obtained spin system definitions and parameters as a source of quantum mechanically simulated reference data in chemical verification analysis is demonstrated.

11.
J Biomol NMR ; 74(4-5): 213-221, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32240470

RESUMO

The 3D HCCH-TOCSY and HCC(CO)NH-TOCSY experiments provide through bond connectivity and are used for side-chain chemical shift assignment by solution-state NMR. Careful design and implementation of the pulse sequence are key to the successful application of the technique particularly when trying to extract the maximum information out of challenging biomolecules. Here we investigate the source of and propose solutions for abnormal peak splitting ranging from 152 to 80 Hz and below that were found in three popular TOCSY-based experiment types: H(F1)-C(F2)-DIPSI-H(F3), C(F1)-DIPSI-C(F2)-H(F3), and C(F1)-DIPSI-N(F2)-HN(F3). Peak splitting occurs in the indirect C(F1) or C(F2) dimension before DIPSI and analyses indicate that the artifacts are resulted mainly from the DIPSI transforming a double spin order [Formula: see text] from 13C-13C scalar 1JCC coupling during t1 into observable megnetization. The splitting is recapitulated by numerical simulation and approaches are proposed to remove it. Adding a pure delay of 3.7 ms immediately before DIPSI is a simple and effective strategy to achieve 3D HCCH-TOCSY and HCC(CO)NH-TOCSY spectra free of splitting with full crosspeak intensity.


Assuntos
Ressonância Magnética Nuclear Biomolecular/métodos , Artefatos , Isótopos de Carbono/análise , Simulação por Computador , Modelos Moleculares
12.
Angew Chem Int Ed Engl ; 59(10): 3938-3941, 2020 03 02.
Artigo em Inglês | MEDLINE | ID: mdl-31917516

RESUMO

We present a method to use long-range CH coupling constants to derive the correct diastereoisomer from the molecular constitution of small molecules. A set of 79 2 JCH and 3 JCH values collected from a single HSQMBC experiment on a sample of strychnine were used in the CASE-3D (computer-assisted 3D structure elucidation) protocol. In addition to the most commonly used 3 JCH coupling constants, the subset of 32 2 JCH values alone showed an excellent degree of configuration selection. The study is mainly based on comparison of DFT-calculated 2,3 JCH values with experimental ones, critical for the case of 2 JCH . But the configuration selection also works well using 3 JCH values predicted from a semi-empirical Karplus-based equation limited to H-C-C-C fragments. The robustness, shown using strychnine as a proof of concept, makes the J-based CASE-3D analysis a viable option for the application in fields such as peptide and carbohydrate research, organic synthesis, natural-product identification and analysis, as well as medicinal chemistry.

13.
NMR Biomed ; 32(1): e4021, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30376203

RESUMO

The glycerol methylene proton resonances (4-4.5 parts per million, ppm), which arise from the triglyceride backbone, are relevant to fat composition assessment and can be measured with proton MRS. The purpose of the presented work is to determine long TE (echo time) point resolved spectroscopy (PRESS) and stimulated echo acquisition mode (STEAM) values at 3 T to resolve the glycerol resonances from that of overlapping water. The response of the glycerol methylene protons of nine edible oils as a function of PRESS and STEAM TE (mixing time, TM = 20 ms) was investigated. In addition, high resolution NMR spectra of the oils were acquired at 16.5 T. Long TE values where J-coupling losses were lowest were selected, namely a TE of 180 ms for PRESS (first echo time 17 ms) and a TE of 100 ms for STEAM (mixing time 20 ms). Oil olefinic (≈5.4 ppm) to glycerol ratios were calculated from the long TE spectra and correlated with 16.5 T ratios. The two techniques yielded olefinic/glycerol ratios that correlated with 16.5 T ratios (R2  = 0.79 for PRESS and 0.90 for STEAM). The efficacy of the sequences in resolving the glycerol resonance from that of water was verified in vivo on tibial bone marrow of four healthy volunteers. In addition, the potential for using the glycerol methylene signal normalized to the methyl signal (≈0.9 ppm) to assess changes in free fatty acid content was demonstrated by measuring differences in spectra acquired from a triglyceride peanut oil phantom and from a phantom composed of a mixture of peanut oil and free fatty acid oleic acid.


Assuntos
Alcenos/análise , Glicerol/análise , Espectroscopia de Ressonância Magnética , Prótons , Triglicerídeos/análise , Adulto , Medula Óssea/química , Feminino , Humanos , Masculino , Imagens de Fantasmas , Tíbia/química , Adulto Jovem
14.
Sensors (Basel) ; 19(16)2019 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-31443310

RESUMO

Low field (LF) nuclear magnetic resonance (NMR) shows potential advantages to study pure heteronuclear J-coupling and observe the fine structure of matter. Power-line harmonics interferences and fixed-frequency noise peaks might introduce discrete noise peaks into the LF-NMR spectrum in an open environment or in a conductively shielded room, which might disturb J-coupling spectra of matter recorded at LF. In this paper, we describe a multi-channel sensor configuration of superconducting quantum interference devices, and measure the multiple peaks of the 2,2,2-trifluoroethanol J-coupling spectrum. For the case of low signal to noise ratio (SNR) < 1, we suggest two noise suppression algorithms using discrete wavelet analysis (DWA), combined with either least squares method (LSM) or gradient descent (GD). The de-noising methods are based on spatial correlation of the interferences among the superconducting sensors, and are experimentally demonstrated. The DWA-LSM algorithm shows a significant effect in the noise reduction and recovers SNR > 1 for most of the signal peaks. The DWA-GD algorithm improves the SNR further, but takes more computational time. Depending on whether the accuracy or the speed of the de-noising process is more important in LF-NMR applications, the choice of algorithm should be made.

15.
Magn Reson Med ; 79(5): 2491-2499, 2018 05.
Artigo em Inglês | MEDLINE | ID: mdl-28940581

RESUMO

PURPOSE: Conventional sequences for metabolite transverse relaxation quantification all generally measure signal changes at different echo times (TEs). However, quantification results obtained via these conventional methods can be very different and are highly dependent on the type of sequence being applied. TE-dependent effects such as diffusion, macromolecule baseline, and J-coupling modulation contribute significantly to these differences. Here, we propose a novel technique-multiple flip angle pulse-driven ratio of longitudinal steady states (MARzss)-for preparing magnetization with T2 /T1 weighting. Using premeasured T1 values, T2 values for metabolites can thereby be determined. The measurement procedure does not require varying TE and is TE independent; T2 , diffusion, and J-coupling effects induced by the readout sequence are cancelled. METHOD: Longitudinal steady states at different flip angles were prepared with trains of radio frequency pulses interspersed with field gradients. The resulting spatially modulated longitudinal magnetization was acquired with a PRESS readout module. A new linear equation for quantification of MARzss was derived from Bloch equations. RESULTS: By implementing this readout-independent method, T2 measurement of brain metabolites at 7T was demonstrated through Bloch simulations, phantom, and in vivo experiments. CONCLUSIONS: The proposed MARzss technique can be used to largely avoid multi-TE associated interference, including diffusion, macromolecules, and J modulation. This MARzss technology, which is uniquely insensitive to readout sequence type and TE, is a promising technique for more accurately probing in vivo metabolite relaxation. Magn Reson Med 79:2491-2499, 2018. © 2017 International Society for Magnetic Resonance in Medicine.


Assuntos
Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Adulto , Encéfalo/diagnóstico por imagem , Encéfalo/metabolismo , Feminino , Ácido Glutâmico/metabolismo , Humanos , Masculino , Imagens de Fantasmas , Processamento de Sinais Assistido por Computador , Adulto Jovem
16.
J Magn Reson Imaging ; 48(1): 169-177, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29226603

RESUMO

BACKGROUND: Fat olefinic/methyl ratios provide a measure of fat unsaturation. The methyl resonance linewidth is altered with the presence of ω-3 fat. PURPOSE: To optimize stimulated echo acquisition mode (STEAM) and point resolved spectroscopy (PRESS) echo times (TE) at 3T to 1) improve olefinic/methyl ratios and 2) enable relative ω-3 fat content assessment. STUDY TYPE: Technical development on phantoms and healthy volunteers. POPULATION: Nine edible oils and four healthy volunteers (tibial bone marrow). FIELD STRENGTH/SEQUENCE: STEAM (mixing time = 20 msec) and PRESS sequences at 3T. High-resolution oil spectra at 16.5T. ASSESSMENT: 3T STEAM and PRESS olefinic/methyl ratios as a function of TE were compared to 16.5T measures for the oils, and to a literature-deduced value for tibial bone marrow. Oil methyl linewidths were calculated at each TE to investigate correlation with expected ω-3 fatty acid content. STATISTICAL TESTS: Percent differences were calculated between oil olefinic/methyl ratios obtained at 3T and 16.5T. Linear regression R2 values measured correlation of methyl linewidth to ω-3 content. RESULTS: STEAM, TE = 120 msec, resulted in average oil olefinic/methyl ratios that differ by about -4.8% compared to high-resolution ratios. Tibial bone marrow olefinic/methyl ratios differ by -1.8% compared with literature-obtained ratios. PRESS, TE = 180 msec, resulted in oil ratios that differ by 7.8% and tibial bone marrow ratios that differ by 0.2%. A TE of 160 msec for both STEAM and PRESS enabled relative levels of oil ω-3 fatty acid content to be estimated (R2 values ≥0.9). DATA CONCLUSION: STEAM, TE = 120 msec (mixing time = 20 msec), and PRESS, TE = 180 msec, optimally estimated olefinic/methyl ratios. STEAM and PRESS, TE = 160 msec, enable relative oil ω-3 fatty acid estimation from methyl linewidths. LEVEL OF EVIDENCE: 1 Technical Efficacy Stage 1 J. Magn. Reson. Imaging 2017.


Assuntos
Tecido Adiposo/diagnóstico por imagem , Ácidos Graxos Ômega-3/metabolismo , Processamento de Imagem Assistida por Computador/métodos , Espectroscopia de Ressonância Magnética , Adulto , Medula Óssea/diagnóstico por imagem , Feminino , Voluntários Saudáveis , Humanos , Modelos Lineares , Masculino , Imagens de Fantasmas , Espectrofotometria , Tíbia/diagnóstico por imagem , Adulto Jovem
17.
Magn Reson Med ; 77(4): 1377-1389, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28150876

RESUMO

The Proton magnetic resonance (1 H-MRS) spectrum contains information about the concentration of tissue metabolites within a predefined region of interest (a voxel). The conventional spectrum in some cases obscures information about less abundant metabolites due to limited separation and complex splitting of the metabolite peaks. One method to detect these metabolites is to reduce the complexity of the spectrum using editing. This review provides an overview of the one-dimensional editing methods available to interrogate these obscured metabolite peaks. These methods include sequence optimizations, echo-time averaging, J-difference editing methods (single BASING, dual BASING, and MEGA-PRESS), constant-time PRESS, and multiple quantum filtering. It then provides an overview of the brain metabolites whose detection can benefit from one or more of these editing approaches, including ascorbic acid, γ-aminobutyric acid, lactate, aspartate, N-acetyl aspartyl glutamate, 2-hydroxyglutarate, glutathione, glutamate, glycine, and serine. Magn Reson Med 77:1377-1389, 2017. © 2017 International Society for Magnetic Resonance in Medicine.


Assuntos
Algoritmos , Encéfalo/metabolismo , Espectroscopia de Prótons por Ressonância Magnética/métodos , Processamento de Sinais Assistido por Computador , Animais , Humanos , Reprodutibilidade dos Testes , Sensibilidade e Especificidade
18.
Magn Reson Chem ; 55(10): 917-927, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28455880

RESUMO

The spectral parameters of selected nerve agent degradation products relevant to the Chemical Weapons Convention, namely, ethyl methylphosphonate, isopropyl methylphosphonate, pinacolyl methylphosphonate and methylphosphonic acid, were studied in wide range of pH conditions and selected temperatures. The pH and temperature dependence of chemical shifts and J couplings was parameterized using Henderson-Hasselbalch-based functions. The obtained parameters allowed calculation of precise chemical shifts and J coupling constants in arbitrary pH conditions and typical measurement temperatures, thus facilitating quantum mechanical simulation of reference spectra in the chosen magnetic field strength for chemical verification. Copyright © 2017 John Wiley & Sons, Ltd.

19.
Angew Chem Int Ed Engl ; 56(26): 7564-7567, 2017 06 19.
Artigo em Inglês | MEDLINE | ID: mdl-28544203

RESUMO

Protein structure and function is dependent on myriad noncovalent interactions. Direct detection and characterization of these weak interactions in large biomolecules, such as proteins, is experimentally challenging. Herein, we report the first observation and measurement of long-range "through-space" scalar couplings between methyl and backbone carbonyl groups in proteins. These J couplings are indicative of the presence of noncovalent C-H⋅⋅⋅π hydrogen-bond-like interactions involving the amide π network. Experimentally detected scalar couplings were corroborated by a natural bond orbital analysis, which revealed the orbital nature of the interaction and the origins of the through-space J couplings. The experimental observation of this type of CH⋅⋅⋅π interaction adds a new dimension to the study of protein structure, function, and dynamics by NMR spectroscopy.


Assuntos
Proteínas/química , Teoria da Densidade Funcional , Ligação de Hidrogênio , Ressonância Magnética Nuclear Biomolecular , Conformação Proteica
20.
Beilstein J Org Chem ; 13: 2535-2548, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29259663

RESUMO

Determining the accurate chemical structures of synthesized compounds is essential for biomedical studies and computer-assisted drug design. The unequivocal determination of N-adamantylation or N-arylation site(s) in nitrogen-rich heterocycles, characterized by a low density of hydrogen atoms, using NMR methods at natural isotopic abundance is difficult. In these compounds, the heterocyclic moiety is covalently attached to the carbon atom of the substituent group that has no bound hydrogen atoms, and the connection between the two moieties of the compound cannot always be established via conventional 1H-1H and 1H-13C NMR correlation experiments (COSY and HMBC, respectively) or nuclear Overhauser effect spectroscopy (NOESY or ROESY). The selective incorporation of 15N-labelled atoms in different positions of the heterocyclic core allowed for the use of 1H-15N (JHN) and 13C-15N (JCN) coupling constants for the structure determinations of N-alkylated nitrogen-containing heterocycles in solution. This method was tested on the N-adamantylated products in a series of azolo-1,2,4-triazines and 1,2,4-triazolo[1,5-a]pyrimidine. The syntheses of adamantylated azolo-azines were based on the interactions of azolo-azines and 1-adamatanol in TFA solution. For azolo-1,2,4-triazinones, the formation of mixtures of N-adamantyl derivatives was observed. The JHN and JCN values were measured using amplitude-modulated 1D 1H spin-echo experiments with the selective inversion of the 15N nuclei and line-shape analysis in the 1D 13С spectra acquired with selective 15N decoupling, respectively. Additional spin-spin interactions were detected in the 15N-HMBC spectra. NMR data and DFT (density functional theory) calculations permitted to suggest a possible mechanism of isomerization for the adamantylated products of the azolo-1,2,4-triazines. The combined analysis of the JHN and JCN couplings in 15N-labelled compounds provides an efficient method for the structure determination of N-alkylated azolo-azines even in the case of isomer formation. The isomerization of adamantylated tetrazolo[1,5-b][1,2,4]triazin-7-ones in acidic conditions occurs through the formation of the adamantyl cation.

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