Plasticity for the win: Flexible transcriptional response to host plant switches in the comma butterfly (Polygonia c-album).

Generalist plant-feeding insects are characterised by a broad host repertoire that can comprise several families or even different orders of plants. The genetic and physiological mechanisms underlying the use of such a wide host range are still not fully understood. Earlier studies indicate that the consumption of different host plants is associated with host-specific gene expression profiles. It remained, however, unclear if and how larvae can alter these profiles in the case of a changing host environment. Using the polyphagous comma butterfly (Polygonia c-album) we show that larvae can adjust their transcriptional profiles in response to a new host plant. The switch to some of the host plants, however, resulted in a larger transcriptional response and, thus, seems to be more challenging. At a physiological level, no correspondence for these patterns could be found in larval performance. This suggests that a high transcriptional but also phenotypic flexibility are essential for the use of a broad and diverse host range. We furthermore propose that host switch tests in the laboratory followed by transcriptomic investigations can be a valuable tool to examine not only plasticity in host use but also subtle and/or transient trade-offs in the evolution of host plant repertoires.

Field distribution patterns of pests are asymmetrically affected by the presence of other herbivores.

Because plant phenotypes can change in response to attacks by herbivores in highly variable ways, the distribution of herbivores depends on the occurrence of other herbivore species on the same plant. We carried out a field study to evaluate the co-occurrence of three coconut pests, the mites Aceria guerreronis (Acari: Eriophyidae), Steneotarsonemus concavuscutum (Acari: Tarsonemidae) and the moth Atheloca bondari (Lepidoptera: Pyralidae). The eriophyid mite Ac. guerreronis is the most important coconut pest around the world, whereas S. concavuscutum and At. bondari are economically important only in some areas along the Brazilian coast. A previous study suggested that the necrosis caused by Ac. guerreronis facilitates the infestation of At. bondari larvae. Because all three species infest the area under the perianths on coconuts and S. concavuscutum also causes necrosis that could facilitate At. bondari, we evaluated the co-occurrence of all three species. We found that the occurrence of At. bondari was positively associated with Ac. guerreronis, but negatively associated with S. concavuscutum. In addition, the two mite species showed negative co-occurrence. Atheloca bondari was found on nuts of all ages, but more on nuts that had fallen than on those on the trees, suggesting that nuts infested by At. bondari tend to fall more frequently. We discuss the status of At. bondari as a pest and discuss experiments to test the causes of these co-occurrence patterns.

Linking conservation implications of modified disturbance regimes, plant communities, plant associations, and arthropod communities.

Modifications to disturbance regimes have landscape-level effects on plant communities and have the potential to influence organisms at multiple trophic levels. We examined differences in the arthropod community across a gradient of oak/hickory dominance, a plant community maintained by disturbance such as periodic fires and extensive land clearing. In southern Illinois, we used patches of forest that varied in tree dominance ranging from 94 to 0% oak/hickory composition dependent on prior land usage that occurred > 50 years ago at minimum, to test two predictions: (1) oak (Quercus) and hickory (Carya) species contain more arthropod biomass and diversity than mesic tree species [e.g., American beech (Fagus grandifolia) and maples (Acer spp.)] and (2) due to plant associations, arthropod communities are more diverse and abundant on host trees within oak/hickory stands than non-oak/hickory stands. Our results were consistent with the prediction that arthropod biomass, guild Shannon diversity, and guild richness are higher on oaks, hickories and tulip tree (Liriodendron tulipifera) than beech and maples. We also found support for the prediction that due to plant associations, % non-oak/hickory stand composition negatively influenced arthropod guild Shannon diversity and guild richness on host trees, including maples and beech. These results are the first to demonstrate that modified disturbance regimes can influence multiple trophic levels both directly due to species-specific variation in susceptibility of plants to herbivory and indirectly through effects of plant associations. This result is concerning as modified disturbance regimes are influencing large-scale plant community composition among biomes worldwide.

The endemic Mediterranean dwarf palm boosts the recolonization of old-fields: Implications for restoration.

Understanding the mechanisms underlying the recolonization of old-fields is critical to promote the recovery of the ecosystem functioning, particularly in regions where agricultural abandonment has increased in the last 60 years. Given that seed arrival and seedling survival often limit the recolonization process by woody species in many Mediterranean habitats, the 'perching' and 'nursing' effects exerted by some pioneer species could be crucial for the restoration of such abandoned lands. We examined the role of an endemic Mediterranean palm (Chamaerops humilis) on the recolonization of old-fields by woody species in southern Iberian Peninsula. We chose three independent old-fields differing in their shrub encroachment levels. To identify potential facilitation by C. humilis, we used a spatially-explicit approach and analyzed its spatial associations with ten common woody species (e.g. Asparagus spp., Daphne gnidium, Olea europaea var. sylvestris, Pyrus bourgaeana). We detected positive spatial associations between C. humilis and woody species at small-scale (1-5 m) in the three plots. Most of such small-scale associations were linked to the bird-dispersal of woody species. Nonetheless, there were marked differences among plots in spatial associations between C. humilis and woody plants, being Asparagus spp. the only species positively associated with C. humilis within the three studied old-fields. These species-specific differences were likely related to variations among old-fields in encroachment level and the legacy of human management. Such small-scales spatial associations between C. humilis and woody species across Iberian old-fields were linked to the perching and nursing effects exerted by the palm. We emphasize the strong potential of this pioneer Mediterranean palm for the restoration of native ecosystems and the recovery of ecosystems services.

Inferring the demographic history of an oligophagous grasshopper: Effects of climatic niche stability and host-plant distribution.

Understanding the consequences of past environmental changes on the abiotic and biotic components of the landscape and deciphering their impacts on the demographic trajectories of species is a major issue in evolutionary biogeography. In this study, we combine nuclear and mitochondrial genetic data to study the phylogeographical structure and lineage-specific demographic histories of the scrub-legume grasshopper (Chorthippus binotatus binotatus), a montane taxon distributed in the Iberian Peninsula and France that exclusively feeds on certain scrub-legume species. Genetic data and paleo-distribution modelling indicate the presence of four main lineages that seem to have diverged in allopatry and long-term persisted in Iberian and French refugia since the Mid Pleistocene. Comparisons of different demographic hypotheses in an Approximate Bayesian Computation (ABC) framework supported a population bottleneck in the northwestern French clade and paleo-distribution modelling indicate that the populations of this lineage have experienced more severe environmental fluctuations during the last 21 000 years than those from the Iberian Peninsula. Accordingly, we found that nuclear genetic diversity of the populations of scrub-legume grasshopper is positively associated with local stability of suitable habitats defined by both Pleistocene climate changes and historical distributional shifts of host-plant species. Overall, our study highlights the importance of integrating the potential effects of abiotic (i.e. climate and geography) and biotic components (i.e. inter-specific interactions) into the study of the evolutionary and demographic history of specialist taxa with narrow ecological requirements.

Timing and host plant associations in the evolution of the weevil tribe Apionini (Apioninae, Brentidae, Curculionoidea, Coleoptera) indicate an ancient co-diversification pattern of beetles and flowering plants.

Host plant shifts of insects can lead to a burst of diversification driven by their arrival in a new adaptive zone. In this context, our study aims to explore timing and patterns in the evolution of the weevil tribe Apionini (Brentidae, Curculionoidea, Coleoptera), particularly in relation to affiliations with their host plants. The classification of Apionini is difficult because of their relatively uniform appearance. Most taxa live mono- or oligophagously on members of Asteraceae or Fabaceae, but many are associated with other plant families, like Lamiaceae, Malvaceae and Polygonaceae. However, a comprehensive hypothesis of the phylogenetic relationships within the tribe Apionini is still missing. In the present study, we reconstructed trees and estimated divergence times among tribes. These results were further used to reconstruct the ancestral host plant use in Apionini weevils and to infer if the divergence timing of putative subtribes corresponds with the occurrence and radiation of their specific host plant groups. Phylogenetic analyses confirm the monophyly of most subtribes, with the exceptions of Oxystomatina, Kalcapiina and Aspidapiina. The subribe Aplemonina is inferred to be sister to all remaining Apionini. Divergence time estimates indicate the first occurrence of Apionini in the Upper Cretaceous and a simultaneous occurrence of several families of flowering plants and the occupation by Apionini weevil herbivores. These conspicuous coincidences support either an ancient co-diversification scenario or an escalating diversification in weevils induced by the radiation of flowering plants.

A cryptic species of Aphis gossypii (Hemiptera: Aphididae) complex revealed by genetic divergence and different host plant association.

Three cryptic species, Aphis gossypii, Aphis glycines, and Aphis rhamnicola sp. nov., are recognized as sharing buckthorn plant, Rhamnus spp. as primary hosts. These aphid species have morphological similarities; however, there are significant genetic differences between the three cryptic species. Based on the high level of genetic divergence and the different secondary host association, we described a new species, Aphis rhamnicola sp. nov., for apterous and alate vivipara, fundatrix, ovipara, and gynopara, including diagnostic key for the host sharing species in the genus Aphis.

Artificial Intelligence: A Promising Tool in Exploring the Phytomicrobiome in Managing Disease and Promoting Plant Health.

There is increasing interest in harnessing the microbiome to improve cropping systems. With the availability of high-throughput and low-cost sequencing technologies, gathering microbiome data is becoming more routine. However, the analysis of microbiome data is challenged by the size and complexity of the data, and the incomplete nature of many microbiome databases. Further, to bring microbiome data value, it often needs to be analyzed in conjunction with other complex data that impact on crop health and disease management, such as plant genotype and environmental factors. Artificial intelligence (AI), boosted through deep learning (DL), has achieved significant breakthroughs and is a powerful tool for managing large complex datasets such as the interplay between the microbiome, crop plants, and their environment. In this review, we aim to provide readers with a brief introduction to AI techniques, and we introduce how AI has been applied to areas of microbiome sequencing taxonomy, the functional annotation for microbiome sequences, associating the microbiome community with host traits, designing synthetic communities, genomic selection, field phenotyping, and disease forecasting. At the end of this review, we proposed further efforts that are required to fully exploit the power of AI in studying phytomicrobiomes.

Bioaugmentation and bioaugmentation-assisted phytoremediation of heavy metal contaminated soil by a synergistic effect of cyanobacteria inoculation, biochar, and purslane (Portulaca oleracea L.).

In recent decades, soil contamination with heavy metals has become an environmental crisis due to their long-term stability and adverse biological effects. Therefore, bioremediation is an eco-friendly technology to remediate contaminated soil, which the efficiency requires further research. This study was designed to comparatively investigate two strategies: bioaugmentation by using a cyanobacterial species (Oscillatoria sp.) and bioaugmentation-assisted phytoremediation by using Oscillatoria sp. and purslane (Portulaca oleracea L.) for the bioremediation of soil contaminated by heavy metals (Cr (III), Cr (VI), Fe, Al, and Zn). Various quantities of biochar (0.5, 2, and 5% (w/w)) were used as an amendment in the experiments to facilitate the remediation process. The results of the bioaugmentation test showed that applying biochar and cyanobacteria into contaminated soil significantly increased the chlorophyll a, nitrogen, and organic carbon contents. In contrast, the extractable fractions of Cr (III), Cr (VI), Zn, Al, and Fe declined compared with those of the control treatment. The highest reduction content (up to 87 %) in the extractable portion was obtained for Cr (VI). The development of longer root and hypocotyl lengths and vigour index from lettuces and radish seeds grown in the remediated soil confirmed the success of remediation treatments. Moreover, the findings of the bioaugmentation-assisted phytoremediation test displayed a reduction in the bioavailable fraction of Cr (III), Cr (VI), Zn, Al, and Fe. Cr (III) presented the highest reduction (up to 90 %) in metal bioavailability. With cyanobacteria inoculation and biochar addition, the shoot and root lengths of purslane grew 4.6 and 3-fold while the heavy metal accumulation decreased significantly. Besides, these treatments enhanced the tolerance index (TI) quantities of purslane whereas diminished its bioaccumulation coefficient (BAC) and bioconcentration factor (BCF) values. For all heavy metals (except Zn), translocation factor (TF) and BAC values were found to be less than 1.0 at all treatments, indicating the successful phytoextraction by the purslane. These results suggest that the purslane can be considered an excellent phytoextracting agent for soils contaminated with heavy metals.

Enhanced specialized metabolite, trichome density, and biosynthetic gene expression in Stevia rebaudiana (Bertoni) Bertoni plants inoculated with endophytic bacteria Enterobacter hormaechei.

Stevia rebaudiana (Bertoni) Bertoni is a plant of economic interest in the food and pharmaceutical industries due its steviol glycosides (SG), which are rich in metabolites that are 300 times sweeter than sucrose. In addition, S. rebaudiana plants contain phenolic compounds and flavonoids with antioxidant activity. Endophytic bacteria promote the growth and development and modulate the metabolism of the host plant. However, little is known regarding the role of endophytic bacteria in the growth; synthesis of SG, flavonoids and phenolic compounds; and the relationship between trichome development and specialized metabolites in S. rebaudiana, which was the subject of this study. The 12 bacteria tested did not increase the growth of S. rebaudiana plants; however, the content of SG increased with inoculation with the bacteria Enterobacter hormaechei H2A3 and E. hormaechei H5A2. The SG content in leaves paralleled an increase in the density of glandular, short, and large trichome. The image analysis of S. rebaudiana leaves showed the presence of SG, phenolic compounds, and flavonoids principally in glandular and short trichomes. The increase in the transcript levels of the KO, KAH, UGT74G1, and UGT76G1 genes was related to the SG concentration in plants of S. rebaudiana inoculated with E. hormaechei H2A3 and E. hormaechei H5A2. In conclusion, inoculation with the stimulating endophytes E. hormaechei H2A3 and E. hormaechei H5A2 increased SG synthesis, flavonoid content and flavonoid accumulation in the trichomes of S. rebaudiana plants.

The Thripidae subfamily Sericothripinae (Thysanoptera) from Saudi Arabia with a new species of Hydatothrips Karny.

The subfamily Sericothripinae Karny (Thysanoptera: Thripidae) is recorded for the first time from the Saudi Arabian fauna. Four species belonging to two genera, Hydatothrips Karny and Neohydatothrips John, are recognized, and H. bahaensis Rasool, sp. n. is described from Al Baha region (southwestern of Saudi Arabia). Host-plant associations are given for the new species and also N. amygdali Minaei, and the male and larvae of N. amygdali are reported for the first time. An illustrated key to the genera and species is provided.

Identification of Potential Host Plants of Sap-Sucking Insects (Hemiptera: Cicadellidae) Using Anchored Hybrid By-Catch Data.

Reliable host plant records are available for only a small fraction of herbivorous insect species, despite their potential agricultural importance. Most available data on insect-plant associations have been obtained through field observations of occurrences of insects on particular plants. Molecular methods have more recently been used to identify potential host plants using DNA extracted from insects, but most prior studies using these methods have focused on chewing insects that ingest tissues expected to contain large quantities of plant DNA. Screening of Illumina data obtained from sap feeders of the hemipteran family Cicadellidae (leafhoppers) using anchored hybrid enrichment indicates that, despite feeding on plant fluids, these insects often contain detectable quantities of plant DNA. Although inclusion of probes for bacterial 16S in the original anchored hybrid probe kit yielded relatively high detection rates for chloroplast 16S, the Illumina short reads also, in some cases, included DNA for various plant barcode genes as "by-catch". Detection rates were generally only slightly higher for Typhlocybinae, which feed preferentially on parenchyma cell contents, compared to other groups of leafhoppers that feed preferentially on phloem or xylem. These results indicate that next-generation sequencing provides a powerful tool to investigate the specific association between individual insect and plant species.

A taxonomic review of the Xanthonia species occurring in Texas (Coleoptera: Chrysomelidae, Eumolpinae).

Taxonomy of the Texas representatives of the genus Xanthonia Baly, 1863 (Coleoptera: Chrysomelidae: Eumolpinae) is reviewed. A total of 12 species are recognized in Texas, including seven that are described as new: X. hirsuta Weisman, X. marquai Riley Quinn, X. nitida Weisman, X. parva Riley Quinn, X. picturata Weisman Riley, X. querci Weisman, and X. texana Weisman. A key to the species recorded from Texas is given together with habitus and male genitalia figures, plant associations, and Texas range maps. Adult seasonality and plant preference data are graphically presented for abundant central Texas species. Previous Texas records of X. striata Staines Weisman are based on misidentifications of X. angulata Staines Weisman.

Living fruits of Psychotria brachyceras Müll. Arg. (Rubiaceae) as the main larval host of Zygothrica orbitalis (Sturtevant, 1916) (Diptera, Drosophilidae)

ABSTRACT Zygothrica is a genus of Drosophilidae (Diptera) whose species utilize flowers and fungi for breeding sites, with records of fungi being used as courtship arena. Due to this habit, its representation in Drosophilidae surveys using banana-baited traps is generally low. However, Zygothrica orbitalis was well represented in a few samples with these traps. In this study, we report for the first time the breeding site of Z. orbitalis in living fruits of Psychotria brachyceras (Rubiaceae), noting that the use of living fruits is rare among Drosophilidae. The fructification of the plant occurs in the area of study from May to August, with previous collection records of the species in the Restinga (sandbank or strand) forest. Additionally, the emergence of some individuals of the invasive species Drosophila suzukii was observed, which highlights the necessity for continuous study of this plant to understand the dynamics between a native and an exotic species. Besides the ecological importance, our results are relevant for understanding the evolution of trophic resource use by the Zygothrica genus.

Genotyping-by-sequencing approach indicates geographic distance as the main factor affecting genetic structure and gene flow in Brazilian populations of Grapholita molesta (Lepidoptera, Tortricidae).

The oriental fruit moth Grapholita molesta is one of the major pests of stone and pome fruit species in Brazil. Here, we applied 1226 SNPs obtained by genotyping-by-sequencing to test whether host species associations or other factors such as geographic distance structured populations of this pest. Populations from the main areas of occurrence of G. molesta were sampled principally from peach and apple orchards. Three main clusters were recovered by neighbor-joining analysis, all defined by geographic proximity between sampling localities. Overall genetic structure inferred by a nonhierarchical amova resulted in a significant ΦST value = 0.19109. Here, we demonstrate for the first time that SNPs gathered by genotyping-by-sequencing can be used to infer genetic structure of a pest insect in Brazil; moreover, our results indicate that those markers are very informative even over a restricted geographic scale. We also demonstrate that host plant association has little effect on genetic structure among Brazilian populations of G. molesta; on the other hand, reduced gene flow promoted by geographic isolation has a stronger impact on population differentiation.

Combined use of a new SNP-based assay and multilocus SSR markers to assess genetic diversity of Xylella fastidiosa subsp. pauca infecting citrus and coffee plants.

Two haplotypes of Xylella fastidiosa subsp. pauca (Xfp) that correlated with their host of origin were identified in a collection of 90 isolates infecting citrus and coffee plants in Brazil, based on a single-nucleotide polymorphism in the gyrB sequence. A new single-nucleotide primer extension (SNuPE) protocol was designed for rapid identification of Xfp according to the host source. The protocol proved to be robust for the prediction of the Xfp host source in blind tests using DNA from cultures of the bacterium, infected plants, and insect vectors allowed to feed on Xfp-infected citrus plants. AMOVA and STRUCTURE analyses of microsatellite data separated most Xfp populations on the basis of their host source, indicating that they were genetically distinct. The combined use of the SNaPshot protocol and three previously developed multilocus SSR markers showed that two haplotypes and distinct isolates of Xfp infect citrus and coffee in Brazil and that multiple, genetically different isolates can be present in a single orchard or infect a single tree. This combined approach will be very useful in studies of the epidemiology of Xfp-induced diseases, host specificity of bacterial genotypes, the occurrence of Xfp host jumping, vector feeding habits, etc., in economically important cultivated plants or weed host reservoirs of Xfp in Brazil and elsewhere.

Acremonium implicatum, a Seed-Transmitted Endophytic Fungus in Brachiaria Grasses.

The pan-tropical grass genus Brachiaria comprises about 100 species, several of which are forages of economic importance, particularly in tropical America. Acremonium implicatum is a fungus that forms an endophytic association with at least some of these economically important grasses. To ascertain whether A. implicatum can be seed transmitted in Brachiaria species, we vegetatively propagated, under greenhouse conditions, 20 tillers from an endophyte-infected mother plant obtained from each of 14 Brachiaria hybrids and species. Ten tillers of each genotype were treated with the fungicide tebuconazole to eliminate the endophyte, and the other 10 were left untreated. Seeds were then harvested individually from all 20 of these genetically identical plants, germinated, and the seedlings grown. A previously developed polymerase chain reaction-based method used a pair of endophyte-specific primers to amplify a diagnostic 500-bp DNA fragment. The seedlings generated from seeds harvested from endophyte-infected plants also tested positive, whereas those from seeds of endophyte-free plants showed no amplification products. This is the first report of A. implicatum being transmitted through seeds of Brachiaria grasses.

Examining relationship between environmental gradients and Lesser Himalyan forest vegetation of Nikyal valley, Azad Jammu and Kashmir using ordination analysis.

OBJECTIVE: To report the relationship of vegetation structure and environmental gradient and physiochemical properties of soil at Nikyal valley, Azad Jammu and Kashmir . METHODS: A survey of natural vegetation and soil of Nikyal valley was undertaken. Phytosociological survey was conducted by using Braun-Blanquet's approach. The study also investigated the vegetation structure and its relationship with altitude and edaphic factors. The floristic data was analyzed by cluster anlaysis, detrended correspondence analysis and canonical correspondence analysis using CANACOO 5.0. RESULTS: A total of 110 plant species and 13 stands were merged into five major associations as dema rcated by cluster analysis and detrended correspondence analysis. The associations were Olea-Pinus-Themeda association, Myrsine-Rhus-Quercus association, Quercus-Rubus-Pinus association and Quercus association. Soil organic matter, saturation, pH and altitude play the major role in distribution of species. CONCLUSIONS: The variation in vegetation structure is controlled by the altitudinal gradient and physiochemical properties of soil. These results indicate a deteriorated forest structure and reduced regeneration pattern, demanding immediate attention of forest management authorities.

Examining relationship between environmental gradients and Lesser Himalyan forest vegetation of Nikyal valley, Azad Jammu and Kashmir using ordination analysis

Objective: To report the relationship of vegetation structure and environmental gradient and physiochemical properties of soil at Nikyal valley, Azad Jammu and Kashmir Methods: A survey of natural vegetation and soil of Nikyal valley was undertaken. Phytosociological survey was conducted by using Braun-Blanquet's approach. The study also investigated the vegetation structure and its relationship with altitude and edaphic factors. The floristic data was analyzed by cluster anlaysis, detrended correspondence analysis and canonical correspondence analysis using CANACOO 5.0. Results: A total of 110 plant species and 13 stands were merged into five major associations as dema rcated by cluster analysis and detrended correspondence analysis. The associations were Olea- Pinus- Themeda association, Myrsine- Rhus- Quercus association, Quercus- Rubus- Pinus association and Quercus association. Soil organic matter, saturation, pH and altitude play the major role in distribution of species. Conclusions: The variation in vegetation structure is controlled by the altitudinal gradient and physiochemical properties of soil. These results indicate a deteriorated forest structure and reduced regeneration pattern, demanding immediate attention of forest management authorities.

Examining relationship between environmental gradients and Lesser Himalyan forest vegetation of Nikyal valley, Azad Jammu and Kashmir using ordination analysis

OBJECTIVE@#To report the relationship of vegetation structure and environmental gradient and physiochemical properties of soil at Nikyal valley, Azad Jammu and Kashmir .@*METHODS@#A survey of natural vegetation and soil of Nikyal valley was undertaken. Phytosociological survey was conducted by using Braun-Blanquet's approach. The study also investigated the vegetation structure and its relationship with altitude and edaphic factors. The floristic data was analyzed by cluster anlaysis, detrended correspondence analysis and canonical correspondence analysis using CANACOO 5.0.@*RESULTS@#A total of 110 plant species and 13 stands were merged into five major associations as dema rcated by cluster analysis and detrended correspondence analysis. The associations were Olea-Pinus-Themeda association, Myrsine-Rhus-Quercus association, Quercus-Rubus-Pinus association and Quercus association. Soil organic matter, saturation, pH and altitude play the major role in distribution of species.@*CONCLUSIONS@#The variation in vegetation structure is controlled by the altitudinal gradient and physiochemical properties of soil. These results indicate a deteriorated forest structure and reduced regeneration pattern, demanding immediate attention of forest management authorities.