Wartime scars or reservoirs of biodiversity? The value of bomb crater ponds in aquatic conservation.

Considering the ongoing loss of aquatic habitats, anthropogenic ponds are gaining importance as substitute habitats. It is therefore important to assess their functioning in comparison to their natural precursors. Here we assess the biodiversity value of sodic bomb crater ponds by comparing their gamma diversity to that of natural reference habitats, astatic soda pans, and assess their importance on the landscape level by studying alpha and beta diversity. We studied aquatic organisms ranging from algae to vertebrates in a dense cluster of 54 sodic bomb crater ponds in Central Europe. Despite the overall small area of the pond cluster, gamma diversity was comparable to that found in surveys of natural habitats that encompassed much wider spatial and temporal scales. We also found a considerable number of species shared with reference habitats, indicating that these anthropogenic habitats function as important refuge sites for several species that are associated with the endangered soda pans. Moreover, we found a number of regionally or worldwide rare species. Among the components of beta diversity, species replacement dominated community assembly. Individual ponds contributed similarly to beta diversity in terms of replacement, being equally important for maintaining high gamma diversity and emphasising the role of the pond network rather than individual ponds. This pattern was seen in all studied groups. Bomb crater ponds therefore acted as important contributors to aquatic biodiversity. Considering the tremendous losses of ponds throughout Europe, anthropogenic ponds should be taken into consideration in nature conservation, especially when occurring in pond networks.

Changing expression of vertebrate immunity genes in an anthropogenic environment: a controlled experiment.

BACKGROUND: The effect of anthropogenic environments on the function of the vertebrate immune system is a problem of general importance. For example, it relates to the increasing rates of immunologically-based disease in modern human populations and to the desirability of identifying optimal immune function in domesticated animals. Despite this importance, our present understanding is compromised by a deficit of experimental studies that make adequately matched comparisons between wild and captive vertebrates. RESULTS: We transferred post-larval fishes (three-spined sticklebacks), collected in the wild, to an anthropogenic (captive) environment. We then monitored, over 11 months, how the systemic expression of immunity genes changed in comparison to cohort-matched wild individuals in the originator population (total n = 299). We found that a range of innate (lyz, defbl2, il1r-like, tbk1) and adaptive (cd8a, igmh) immunity genes were up-regulated in captivity, accompanied by an increase in expression of the antioxidant enzyme, gpx4a. For some genes previously known to show seasonality in the wild, this appeared to be reduced in captive fishes. Captive fishes tended to express immunity genes, including igzh, foxp3b, lyz, defbl2, and il1r-like, more variably. Furthermore, although gene co-expression patterns (analyzed through gene-by-gene correlations and mutual information theory based networks) shared common structure in wild and captive fishes, there was also significant divergence. For one gene in particular, defbl2, high expression was associated with adverse health outcomes in captive fishes. CONCLUSION: Taken together, these results demonstrate widespread regulatory changes in the immune system in captive populations, and that the expression of immunity genes is more constrained in the wild. An increase in constitutive systemic immune activity, such as we observed here, may alter the risk of immunopathology and contribute to variance in health in vertebrate populations exposed to anthropogenic environments.

Sources of intraspecific variation in the isotopic niche of a semi-aquatic predator in a human-modified landscape.

Intraspecific variation modulates patterns of resource use by species, potentially affecting the structure and stability of food webs. In human-modified landscapes, habitat disturbance modifies trophic interactions and intraspecific niche variation, impacting population persistence. Here, we investigated the relationship of sex, ontogeny, and habitat factors with the trophic niche of Caiman crocodilus in an agricultural landscape. We evaluated temporal variation in the trophic niche parameters using carbon and nitrogen stable isotope analysis from different body tissues. We found that caimans exploit the same carbon and nitrogen pools through time, with low isotopic variability between seasons, partly due to the slow isotope turnover rates of tissues in crocodilians. Conversely, the trophic niche of caimans varied across habitats, but with no evidence of a difference between natural and anthropogenic habitats. It apparently results from the influence of habitat suitability, connectivity, and caiman movements during the foraging. Our findings highlight the broader niches of juvenile caimans relative to adults, possibly in response of territorialism and opportunistic foraging strategy. Although using similar resources, females had a larger niche than males, probably associated with foraging strategies during nesting. Considering the sex and body size categories, caimans occupied distinct isotopic regions in some habitats, indicating apparent niche segregation. Ontogenetic trophic shifts in the isotopes (δ13C and δ15N) depended on sex, leading to resource partitioning that can potentially reduce intraspecific competition. Decision-makers and stakeholders should consider the trophic dynamics of sex and body size groups for the sustainable management and conservation of caiman populations, which implies in the maintenance of wetland habitats and landscape heterogeneity in the Formoso River floodplain.

Semi-intensive shrimp farms as experimental arenas for the study of predation risk from falcons to shorebirds.

Varying environmental conditions and energetic demands can affect habitat use by predators and their prey. Anthropogenic habitats provide an opportunity to document both predation events and foraging activity by prey and therefore enable an empirical evaluation of how prey cope with trade-offs between starvation and predation risk in environments of variable foraging opportunities and predation danger. Here, we use seven years of observational data of peregrine falcons Falco peregrinus and shorebirds at a semi-intensive shrimp farm to determine how starvation and predation risk vary for shorebirds under a predictable variation in foraging opportunities. Attack rate (mean 0.1 attacks/hr, equating 1 attack every ten hours) was positively associated with the total foraging area available for shorebirds at the shrimp farm throughout the harvesting period, with tidal amplitude at the adjacent mudflat having a strong nonlinear (quadratic) effect. Hunt success (mean 14%) was higher during low tides and declined as the target flocks became larger. Finally, individual shorebird vigilance behaviors were more frequent when birds foraged in smaller flocks at ponds with poorer conditions. Our results provide empirical evidence of a risk threshold modulated by tidal conditions at the adjacent wetlands, where shorebirds trade-off risk and rewards to decide to avoid or forage at the shrimp farm (a potentially dangerous habitat) depending on their need to meet daily energy requirements. We propose that semi-intensive shrimp farms serve as ideal "arenas" for studying predator-prey dynamics of shorebirds and falcons, because harvest operations and regular tidal cycles create a mosaic of foraging patches with predictable food supply. In addition, the relatively low hunt success suggests that indirect effects associated with enhanced starvation risk are important in shorebird life-history decisions.

Orchids of Azerbaijani Cemeteries.

In order to explore their orchid flora, we performed surveys of 96 Azerbaijani burial places in 2018 and 2019. Altogether, 28 orchid taxa were found in 37 visited cemeteries. In the orchid diversity a remarkable pattern was observed: geographic latitude was significantly and positively related to the number of taxa and number of individuals. The most widespread and abundant orchids in Azerbaijani graveyards were Anacamptis pyramidalis and A. papilionacea (found in 23 and 8 cemeteries, respectively). Azerbaijani cemeteries can be important refuges for rare and threatened orchids, e.g., Himantoglossum formosum (three cemeteries), Ophrys sphegodes subsp. mammosa (eight), Orchis adenocheila (two), O. punctulata (three), O. stevenii (one) and Steveniella satyrioides (one). Epipactis turcica, detected in a single locality, was previously unknown to the flora of Azerbaijan. Additionally, we documented orchid tuber (salep) collection in two cemeteries.

Methodology of the habitat classification of anthropogenic urban areas in Budapest (Hungary).

The vast majority of floristical and coenological studies focus on the natural vegetation and its remnants in urban environments; however, there is an increasing interest in the systematic exploration of built environments. This survey of the inhabited areas of Budapest launched in 2018 applied a new and detailed methodology. The territorial units of the survey were street sections, where the presence of vascular plants was recorded in ecologically different habitats separately. We laid down the foundations to establish new habitat categories for the habitat classification and mapping of urban ecosystems using a different approach than the Hungarian habitat classification system (ÁNÉR). The method enables us to study the flora of urban ecosystems in detail. We established 18 urban habitat categories, surveyed more than 27,000 survey units and registered 647 spontaneously growing plant species in Budapest. Our survey evinced the spontaneous occurrence of 193 alien species in Budapest, 81 of them are data deficient, while 10 of them are new introductions in Hungary. 53.9% of the aliens are cultivated frequently in Hungary.

Roadsides provide refuge for orchids: characteristic of the surrounding landscape.

Seminatural habitats are declining throughout the world; thus, the role of small anthropogenic habitats in the preservation of plants is becoming increasingly appreciated. Here, we surveyed the orchid flora of roadside verges in five Central European countries (Austria, Hungary, Romania, Slovakia, and Slovenia) and tested how the surrounding landscape matrix affects the overall number of species and individuals, and also different functional groups of orchids. We found more than 2,000 individuals of 27 orchid species during our surveys. According to our results, the increasing coverage of agricultural and urban areas negatively affects both the number of orchid species and individuals on roadsides. Our study further suggests that differences in the surrounding habitats affect which species are found on roadsides, since the increasing coverage of grasslands or forested areas around orchid occurrences had a significant positive effect on the number of grassland or forest-dwelling species and individuals, respectively. Most variance in orchid numerosity and diversity was explained by the cover of the suitable habitat types of the respective taxa in the surrounding landscape of the sampling points. This highlights the importance of roadsides acting as refugia for numerous species and valuable plant communities as well as in supporting biodiversity in general.

A comparison of methods to determine chimpanzee home-range size in a forest-farm mosaic at Madina in Cantanhez National Park, Guinea-Bissau.

Human activities impact the distribution of numerous species. Anthropogenic habitats are often fragmented, and wildlife must navigate through human-influenced and 'natural' parts of the landscape to access resources. Different methods to determine the home-range areas of nonhuman primates have not considered the additional complexities of ranging in anthropogenic areas. Here, using 6 months of spatial data on the distribution of chimpanzee presence (feces, feeding traces, nests, opportunistic encounters; n = 833) collected across the wet and dry seasons, we examine different analytical techniques to calculate the home-range size of an unhabituated chimpanzee (Pan troglodytes verus) community inhabiting a forest-farm mosaic at Madina, Cantanhez National Park in Guinea-Bissau. The minimum convex polygon method and the grid cell (500 m × 500 m cell size) method estimated the chimpanzees home-range size at 19.02 and 15.50 km2, respectively with kernel analysis calculating a lower value of 8.52 km2. For the grid cell method, home-range estimates varied with cell size, with larger cells producing larger estimates. We compare our home-range estimates with other chimpanzee research sites across Africa. We recommend the use of kernel analysis for determining primate home ranges, especially for those groups exploiting fragmented habitats including forest-farm mosaics, as this method takes account of inaccessible or infrequently used anthropogenic areas across the complete home range of the primate group. However, care must be taken when using this method, since it is sensitive to small sample sizes that can occur when studying unhabituated communities, resulting in underestimated home ranges.

Anthropogenic Factors Driving Recent Range Expansion of the Malaria Vector Anopheles stephensi.

The malaria vector Anopheles stephensi is found in wide tracts of Asia and the Middle East. The discovery of its presence for the first time in the island of Sri Lanka in 2017, poses a threat of malaria resurgence in a country which had eliminated the disease in 2013. Morphological and genetic characterization showed that the efficient Indian urban vector form An. stephensi sensu stricto or type form, has recently expanded its range to Jaffna and Mannar in northern Sri Lanka that are in proximity to Tamil Nadu state in South India. Comparison of the DNA sequences of the cytochrome oxidase subunit 1 gene in An. stephensi in Jaffna and Mannar in Sri Lanka and Tamil Nadu and Puducherry states in South India showed that a haplotype that is due to a sequence change from valine to methionine in the cytochrome oxidase subunit 1 present in the Jaffna and Mannar populations has not been documented so far in Tamil Nadu/Puducherry populations. The Jaffna An. stephensi were closer to Tamil Nadu/Puducherry populations and differed significantly from the Mannar populations. The genetic findings cannot differentiate between separate arrivals of the Jaffna and Mannar An. stephensi from Tamil Nadu or a single arrival and dispersion to the two locations accompanied by micro-evolutionary changes. Anopheles stephensi was observed to undergo preimaginal development in fresh and brackish water domestic wells and over ground cement water storage tanks in the coastal urban environment of Jaffna and Mannar. Anopheles stephensi in Jaffna was resistant to the common insecticides deltamethrin, dichlorodiphenyltrichloroethane and Malathion. Its preimaginal development in wells and water tanks was susceptible to predation by the larvivorous guppy fish Poecilia reticulata. The arrival, establishment, and spread of An. stephensi in northern Sri Lanka are analyzed in relation to anthropogenic factors that favor its range expansion. The implications of the findings for global public health challenges posed by malaria and other mosquito-borne diseases are discussed.

Terrestrial isopods in urban environments: an overview.

In an increasingly urbanized world scientific research has shifted towards the understanding of cities as unique ecosystems. Urban land use change results in rapid and drastic changes in physical and biological properties, including that of biodiversity and community composition. Soil biodiversity research often lags behind the more charismatic groups such as vertebrates and plants. This paper attempts to fill this gap and provides an overview on urban isopod research. First, a brief overview on urban land use change is given, specifically on the major alterations on surface soils. Historical studies on urban isopods is summarized, followed by the status of current knowledge on diversity, distribution, and function of urban isopod species and communities. A review of more than 100 publications revealed that worldwide 50 cities and towns have some record of terrestrial isopod species, but only a few of those are city-scale explorations of urban fauna. A total of 110 isopod species has been recorded although the majority of them only once. The ten most frequently occurring isopods are widely distributed synanthropic species. Knowledge gaps and future research needs call for a better global dataset, long term monitoring of urban populations, multi-scale analyses of landscape properties as potential drivers of isopod diversity, and molecular studies to detect evolutionary changes.

Female Spider Monkeys (Ateles geoffroyi) Cope with Anthropogenic Disturbance Through Fission-Fusion Dynamics.

Most primates live in habitats with some level of anthropogenic disturbance, and such disturbances have a larger impact on frugivorous primates that are more sensitive to ecological disruptions than folivores. Fecal glucocorticoid metabolites provide insight into how the external environment affects internal physiological state, and thus provide information on how anthropogenic pressures become embodied. Here, I examine how subgroup size and glucocorticoids vary with high and low fruit abundance, and how fruit abundance, subgroup size, and activity budget affect fecal glucocorticoid metabolites in female spider monkeys (Ateles geoffroyi) living in an anthropogenically disturbed habitat. I measured these variables via behavioral, ecological, and fecal sampling for 15 months in 17 female spider monkeys at El Zota Biological Field Station. Subgroup size was significantly larger during periods of high fruit abundance, but glucocorticoids did not differ between periods of low and high fruit abundance. Monthly fruit abundance predicted subgroup sizes significantly, but did not predict fecal glucocorticoid concentrations. Increased resting time and reproductive state predicted fecal glucocorticoid concentrations significantly, but travel and foraging time had no significant effect on glucocorticoid concentrations. Individual resting time over the study period correlated negatively with glucocorticoid concentrations. These results suggest that spider monkeys cope with variation in fruit abundance by adjusting subgroup size, and that these adjustments may mitigate environmental stress in this mildly seasonal environment. The large, relatively productive forest size at this site, and the availability of anthropogenic food sources, enable this population of spider monkeys to cope with human-induced habitat disturbance.

Pollinator diversity and reproductive success of Epipactis helleborine (L.) Crantz (Orchidaceae) in anthropogenic and natural habitats.

BACKGROUND: Epipactis helleborine is an Eurasian orchid species which prefers woodland environments but it may also spontaneously and successfully colonise human-made artificial and disturbed habitats such as roadsides, town parks and gardens. It is suggested that orchids colonising anthropogenic habitats are characterised by a specific set of features (e.g., large plant size, fast flower production). However, as it is not well known how pollinator diversity and reproductive success of E. helleborine differs in populations in anthropogenic habitats compared to populations from natural habitats, we wanted to compare pollinator diversity and reproductive success of this orchid species between natural and anthropogenic habitat types. METHODS: Pollination biology, reproductive success and autogamy in populations of E. helleborine from anthropogenic (roadside) and natural (forest) habitats were compared. Eight populations (four natural and four human-disturbed ones) in two seasons were studied according to height of plants, length of inflorescences, as well as numbers of juvenile shoots, flowering shoots, flowers, and fruits. The number and diversity of insect pollinators were studied in one natural and two human-disturbed populations. RESULTS: Reproductive success (the ratio of the number of flowers to the number of fruits) in the populations from anthropogenic habitats was significantly higher than in the natural habitats. Moreover, plants from anthropogenic habitats were larger than those from natural ones. In both types of populations, the main insect pollinators were Syrphidae, Culicidae, Vespidae, Apidae and Formicidae. With respect to the type of pollinators' mouth-parts, chewing (39%), sponging (34%) and chewing-sucking (20%) pollinators prevailed in anthropogenic habitats. In natural habitats, pollinators with sponging (55%) and chewing mouth-parts (32%) dominated, while chewing-sucking and piercing-sucking insects accounted for 9% and 4% respectively. DISCUSSION: We suggest that higher reproductive success of E. helleborine in the populations from anthropogenic habitats than in the populations from natural habitats may result from a higher number of visits by pollinators and their greater species diversity, but also from the larger size of plants growing in such habitats. Moreover, our data clearly show that E. helleborine is an opportunistic species with respect to pollinators, with a wide spectrum of pollinating insects. Summarising, E. helleborine is a rare example of orchid species whose current range is not declining. Its ability to make use of anthropogenically altered habitats has allowed its significant spatial range expansion, and even successful colonisation of North America.