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1.
Ann Bot ; 133(7): 1025-1040, 2024 May 13.
Artigo em Inglês | MEDLINE | ID: mdl-38502708

RESUMO

BACKGROUND AND AIMS: Maerl-associated communities have received considerable attention due to their uniqueness, biodiversity and functional importance. Although the impacts of human activities are well documented for maerl-associated macrofauna, the spatio-temporal variations of macroalgae have comparatively been neglected, and the drivers that influence their dynamics are poorly known. We investigate the links between maerl-associated macroalgal communities, anthropogenic pressures and environmental conditions, and hypothesize that sites under human pressure would exhibit different dynamics when compared to reference sites. METHODS: To better understand community variation through space and time, four subtidal maerl beds under different pressures were consistently monitored over one year in the bay of Brest, Brittany, France. Both macroalgae community monitoring and environmental data were acquired through field sampling and available models. KEY RESULTS: Higher macroalgal biomass was observed within eutrophic sites, especially in summer (more than ten times higher than in the Unimpacted site), caused by free-living forms of opportunistic red macroalgae. The Dredged site also exhibited distinct macroalgal communities during summer from the Unimpacted site. Nutrient concentrations and seasonality proved to be key factors affecting the macroalgal community composition, although dredging and its effects on granulometry also had a strong influence. Over the long term, fewer than half of the species identified during historical surveys were found, indicating major temporal changes. CONCLUSIONS: Human pressures have strong impacts on maerl-associated macroalgal communities. Nutrient concentrations and dredging pressure appear as the main anthropogenic factors shaping maerl-associated macroalgal communities. Additionally, our results suggest historical changes in maerl-associated macroalgal communities over 25 years in response to changes in local human pressure management. This study suggests that maerl-associated macroalgal communities could be used as indicators of anthropogenically driven changes in this habitat.


Assuntos
Alga Marinha , Alga Marinha/fisiologia , França , Humanos , Ecossistema , Estações do Ano , Biodiversidade , Efeitos Antropogênicos , Biomassa , Dinâmica Populacional , Eutrofização , Atividades Humanas
2.
J Anim Ecol ; 2024 Aug 09.
Artigo em Inglês | MEDLINE | ID: mdl-39120041

RESUMO

Biotic homogenization is a process whereby species assemblages become more similar through time. The standard way of identifying the process of biotic homogenization is to look for decreases in spatial beta-diversity. However, using a single assemblage-level metric to assess homogenization can mask important changes in the occupancy patterns of individual species. Here, we analysed changes in the spatial beta-diversity patterns (i.e. biotic heterogenization or homogenization) of British bird assemblages within 30 km × 30 km regions between two periods (1988-1991 and 2008-2011). We partitioned the change in spatial beta-diversity into extirpation and colonization-resultant change (i.e. change in spatial beta-diversity within each region resulting from both extirpation and colonization). We used measures of abiotic change in combination with Bayesian modelling to disentangle the drivers of biotic heterogenization and homogenization. We detected both heterogenization and homogenization across the two time periods and three measures of diversity (taxonomic, phylogenetic, and functional). In addition, both extirpation and colonization contributed to the observed changes, with heterogenization mainly driven by extirpation and homogenization by colonization. These assemblage-level changes were primarily due to shifting occupancy patterns of generalist species. Compared to habitat generalists, habitat specialists had significantly (i) higher average contributions to colonization-resultant change (indicating heterogenization within a region due to colonization) and (ii) lower average contributions to extirpation-resultant change (indicating homogenization from extirpation). Generalists showed the opposite pattern. Increased extirpation-resultant homogenization within regions was associated with increased urban land cover and decreased habitat diversity, precipitation, and temperature. Changes in extirpation-resultant heterogenization and colonization-resultant heterogenization were associated with differences in elevation between regions and changes in temperature and land cover. Many of the 'winners' (i.e. species that increased in occupancy) were species that had benefitted from conservation action (e.g. buzzard (Buteo buteo)). The 'losers' (i.e. those that decreased in occupancy) consisted primarily of previously common species, such as cuckoo (Cuculus canorus). Our results show that focusing purely on changes in spatial beta-diversity over time may obscure important information about how changes in the occupancy patterns of individual species contribute to homogenization and heterogenization.

3.
Indian J Microbiol ; 64(1): 1-19, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38468730

RESUMO

Breast cancer is the most frequent kind of cancer and the second leading cause of mortality worldwide, behind heart disease. Next-generation sequencing technologies enables for unprecedented enumeration of human resident gut microorganisms, conferring novel insights into the role of the microbiota in health and individuals with breast cancer. A growing body of research on microbial dysbiosis seems to indicate an elevated risk of health complications including cancer. Although several dysbiosis indices have been proposed, their underlying methodology, as well as the cohorts and conditions of breast cancer patients are significantly different. To date, these indices have not yet been thoroughly reviewed especially when it comes to researching the estrogen-gut microbiota axis. Instead of providing a thorough rating of the most effective diversity measurements, the current work aims to be used to assess the relevance of each study's findings across the demographic data, different subtypes, and stages of breast cancer, and tie them to the estrobolome, which controls the amount of oestrogen that circulates through humans. This review will cover 11 studies which will go into a detailed discussion for the microbiome results of the mentioned studies, leaving to the user the final choice of the most suited indices as well as highlight the observed bacteria found to be related to the estrobolome in hopes of giving the reader a better understanding for the biological cross-talk between gut microbiome and breast cancer progression. Supplementary Information: The online version contains supplementary material available at 10.1007/s12088-023-01135-z.

4.
Ecol Lett ; 26(11): 1951-1962, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37858984

RESUMO

Urbanization is a major driver of biodiversity change but how it interacts with spatial and temporal gradients to influence the dynamics of plant-pollinator networks is poorly understood, especially in tropical urbanization hotspots. Here, we analysed the drivers of environmental, spatial and temporal turnover of plant-pollinator interactions (interaction ß-diversity) along an urbanization gradient in Bengaluru, a South Indian megacity. The compositional turnover of plant-pollinator interactions differed more between seasons and with local urbanization intensity than with spatial distance, suggesting that seasonality and environmental filtering were more important than dispersal limitation for explaining plant-pollinator interaction ß-diversity. Furthermore, urbanization amplified the seasonal dynamics of plant-pollinator interactions, with stronger temporal turnover in urban compared to rural sites, driven by greater turnover of native non-crop plant species (not managed by people). Our study demonstrates that environmental, spatial and temporal gradients interact to shape the dynamics of plant-pollinator networks and urbanization can strongly amplify these dynamics.


Assuntos
Polinização , Urbanização , Humanos , Biodiversidade , Plantas , Estações do Ano , Ecossistema
5.
Mol Ecol ; 32(23): 6304-6319, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-35997629

RESUMO

Ice-free areas are expanding worldwide due to dramatic glacier shrinkage and are undergoing rapid colonization by multiple lifeforms, thus representing key environments to study ecosystem development. It has been proposed that the colonization dynamics of deglaciated terrains is different between surface and deep soils but that the heterogeneity between communities inhabiting surface and deep soils decreases through time. Nevertheless, tests of this hypothesis remain scarce, and it is unclear whether patterns are consistent among different taxonomic groups. Here, we used environmental DNA metabarcoding to test whether community diversity and composition of six groups (Eukaryota, Bacteria, Mycota, Collembola, Insecta, and Oligochaeta) differ between the surface (0-5 cm) and deeper (7.5-20 cm) soil at different stages of development and across five Alpine glaciers. Taxonomic diversity increased with time since glacier retreat and with soil evolution. The pattern was consistent across groups and soil depths. For Eukaryota and Mycota, alpha-diversity was highest at the surface. Time since glacier retreat explained more variation of community composition than depth. Beta-diversity between surface and deep layers decreased with time since glacier retreat, supporting the hypothesis that the first 20 cm of soil tends to homogenize through time. Several molecular operational taxonomic units of bacteria and fungi were significant indicators of specific depths and/or soil development stages, confirming the strong functional variation of microbial communities through time and depth. The complexity of community patterns highlights the importance of integrating information from multiple taxonomic groups to unravel community variation in response to ongoing global changes.


Assuntos
Microbiota , Microbiologia do Solo , Bactérias/genética , Solo , Eucariotos , Fungos/genética , Microbiota/genética , Camada de Gelo/microbiologia
6.
Glob Chang Biol ; 29(24): 6931-6944, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37846595

RESUMO

Human-induced climate change has intensified negative impacts on socioeconomic factors, the environment, and biodiversity, including changes in rainfall patterns and an increase in global average temperatures. Drylands are particularly at risk, with projections suggesting they will become hotter, drier, and less suitable for a significant portion of their species, potentially leading to mammal defaunation. We use ecological niche modelling and community ecology biodiversity metrics to examine potential geographical range shifts of non-volant mammal species in the largest Neotropical dryland, the Caatinga, and evaluate impacts of climate change on mammal assemblages. According to projections, 85% of the mammal species will lose suitable habitats, with one quarter of species projected to completely lose suitable habitats by 2060. This will result in a decrease in species richness for more than 90% of assemblages and an increase in compositional similarity to nearby assemblages (i.e., reduction in spatial beta diversity) for 70% of the assemblages. Small-sized mammals will be the most impacted and lose most of their suitable habitats, especially in highlands. The scenario is even worse in the eastern half of Caatinga where habitat destruction already prevails, compounding the threats faced by species there. While species-specific responses can vary with respect to dispersal, behavior, and energy requirements, our findings indicate that climate change can drive mammal assemblages to biotic homogenization and species loss, with drastic changes in assemblage trophic structure. For successful long-term socioenvironmental policy and conservation planning, it is critical that findings from biodiversity forecasts are considered.


Assuntos
Mudança Climática , Mamíferos , Animais , Humanos , Mamíferos/fisiologia , Florestas , Ecossistema , Biodiversidade , Clima Tropical
7.
Trop Med Int Health ; 28(9): 742-752, 2023 09.
Artigo em Inglês | MEDLINE | ID: mdl-37433750

RESUMO

OBJECTIVE: Biogeographic regionalization represents abstractions of the organisation of life on Earth, and can provide a large-scaled framework for health management and planning. We aimed at determining a biogeographic regionalization for human infectious diseases in Brazil, and at investigating non-mutually exclusive hypotheses predicting the observed regions. METHODS: Based on the spatial distributions of 12 infectious diseases with mandatory notification (SINAN database, 2007-2020, n = 15,839), we identified regions through a clustering procedure based on beta-diversity turnover. The analysis was repeated 1000 times by randomly shuffling the rows (0.5° cells) in the original matrix. We evaluated the relative importance of variables using multinomial logistic regression models: contemporary climate (temperature and precipitation), human activity (population density and geographic accessibility), land cover (11 classes), and the full model (all variables). We refined the geographic boundaries of each cluster by polygonising their kernel densities to identify clusters' core zones. RESULTS: The two-cluster solution showed the best correspondence between disease ranges and clusters geographic limits. The largest cluster occurred with more density in the central and northeastern regions, while the smaller and complementary cluster occurred in the south and southeastern region. The best model for explaining the regionalization was the full model, supporting the 'complex association hypothesis'. The heatmap showed a NE-S directional display of the cluster's densities, and core zones showed geographic correspondence with tropical + arid (NE) versus temperate (S) climates. CONCLUSION: Our findings indicate that there is a discernible latitudinal pattern in the turnover of disease in Brazil, and this phenomenon is associated with an intricate interplay between contemporary climate, population activity, and land cover. This generalised biogeographic pattern may offer the earliest insights into the geographic arrangement of diseases in the country. We suggested that the latitudinal pattern could be adopted as a nationwide framework for geographic vaccine allocation.


Assuntos
Clima , Doenças Transmissíveis , Humanos , Brasil/epidemiologia , Temperatura , Doenças Transmissíveis/epidemiologia
8.
World J Urol ; 41(11): 3019-3026, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37684401

RESUMO

PURPOSE: To investigate the difference in gut microbiome composition between patients with chronic prostatitis/chronic pelvic pain syndrome (CP/CPPS) and healthy controls, and to assess the potential of gut microbiota as predictive markers for CP/CPPS risk. METHODS: The present study included 41 CP/CPPS patients and 43 healthy controls in China. Fecal specimen data were obtained and analysed using 16S rRNA gene sequencing. Alpha and beta-diversity indices, relative microbiome abundances, cluster analysis, and linear discriminant analysis effect size (LEfSe) were employed. Microbial biomarkers were selected for the development of a diagnostic classification model, and the functional prediction was conducted using PICRUSt2. RESULTS: Alpha-diversity measures revealed no statistically significant difference in bacterial community structure between CP/CPPS patients and controls. However, significant differences were observed in the relative abundances of several bacterial genera. Beta-diversity analysis revealed a distinct separation between the two groups. Significant inter-group differences were noted at various taxonomic levels, with specific bacterial genera being significantly different in abundance. The LEfSe analysis indicated that three bacterial species were highly representative and seven bacterial species were low in CP/CPPS patients as compared to the control group. A diagnostic model for CP/CPPS based on microbial biomarkers exhibited good performance. PICRUSt2 functional profiling indicated significant differences in the development and regeneration pathway. CONCLUSION: Significant differences in the gut microbiome composition were found between groups. The study provided a novel diagnostic model for CP/CPPS based on microbiota, presenting promising potential for future therapeutic targets and non-invasive diagnostic biomarkers for CP/CPPS patients.


Assuntos
Dor Crônica , Microbioma Gastrointestinal , Prostatite , Masculino , Humanos , Doença Crônica , Prostatite/diagnóstico , RNA Ribossômico 16S/genética , Biomarcadores , Dor Pélvica
9.
J Anim Ecol ; 92(2): 442-453, 2023 02.
Artigo em Inglês | MEDLINE | ID: mdl-36507573

RESUMO

Global biodiversity decline and its cascading effects through trophic interactions pose a severe threat to human society. Establishing the impacts of biodiversity decline requires a more thorough understanding of multi-trophic interactions and, more specifically, the effects that loss of diversity in primary producers has on multi-trophic community assembly. Within a synthetic conceptual framework for multi-trophic beta-diversity, we tested a series of hypotheses on neutral and niche-based bottom-up processes in assembling herbivore and carnivore communities in a subtropical forest using linear models, hieratical variance partitioning based on linear mixed-effects models (LMMs) and simulation. We found that the observed taxonomic, phylogenetic and functional beta-diversity of both herbivorous caterpillars and carnivorous spiders were significantly and positively related to tree dissimilarity. Linear models and variance partitioning for LMMs jointly suggested that as a result of bottom-up effects, producer dissimilarities were predominant in structuring consumer dissimilarity, the strength of which highly depended on the trophic dependencies on producers, the diversity facet examined, and data quality. Importantly, linear models for standardized beta-diversities against producer dissimilarities implied a transition between niche-based processes such as environmental filtering and competitive exclusion, which supports the role of bottom-up effect in determining consumer community assembly. These findings enrich our mechanistic understanding of the 'Diversity Begets Diversity' hypothesis and the complexity of higher-trophic community assembly, which is fundamental for sustainable biodiversity conservation and ecosystem management.


Assuntos
Ecossistema , Herbivoria , Humanos , Animais , Filogenia , Biodiversidade , Florestas
10.
Microb Ecol ; 86(1): 337-349, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-35835965

RESUMO

Microbial communities in agricultural soils are fundamental for plant growth and in vineyard ecosystems contribute to defining regional wine quality. Managing soil microbes towards beneficial outcomes requires knowledge of how community assembly processes vary across taxonomic groups, spatial scales, and through time. However, our understanding of microbial assembly remains limited. To quantify the contributions of stochastic and deterministic processes to bacterial and fungal assembly across spatial scales and through time, we used 16 s rRNA gene and ITS sequencing in the soil of an emblematic wine-growing region of Italy.Combining null- and neutral-modelling, we found that assembly processes were consistent through time, but bacteria and fungi were governed by different processes. At the within-vineyard scale, deterministic selection and homogenising dispersal dominated bacterial assembly, while neither selection nor dispersal had clear influence over fungal assembly. At the among-vineyard scale, the influence of dispersal limitation increased for both taxonomic groups, but its contribution was much larger for fungal communities. These null-model-based inferences were supported by neutral modelling, which estimated a dispersal rate almost two orders-of-magnitude lower for fungi than bacteria.This indicates that while stochastic processes are important for fungal assembly, bacteria were more influenced by deterministic selection imposed by the biotic and/or abiotic environment. Managing microbes in vineyard soils could thus benefit from strategies that account for dispersal limitation of fungi and the importance of environmental conditions for bacteria. Our results are consistent with theoretical expectations whereby larger individual size and smaller populations can lead to higher levels of stochasticity.


Assuntos
Microbiota , Micobioma , Microbiologia do Solo , Solo , Fungos/genética , Bactérias/genética
11.
Med Vet Entomol ; 37(4): 693-704, 2023 12.
Artigo em Inglês | MEDLINE | ID: mdl-37340616

RESUMO

Microorganisms form close associations with metazoan hosts forming symbiotic communities, known as microbiomes, that modulate host physiological processes. Mosquitoes are of special interest in exploring microbe-modulated host processes due to their oversized impact on human health. However, most mosquito work is done under controlled laboratory conditions where natural microbiomes are not present and inferences from these studies may not extend to natural populations. Here we attempt to assemble a wild-resembling bacteriome under laboratory conditions in an established laboratory colony of Aedes albopictus using aquatic media from environmentally-exposed and differentially filtered larval habitats. While we did not successfully replicate a wild bacteriome using these filtrations, we show that these manipulations alter the bacteriomes of mosquitoes, generating a unique composition not seen in wild populations collected from and near our source water or in our laboratory colony. We also demonstrate that our filtration regimens impact larval development times, as well as impact adult survival on different carbohydrate diets.


Assuntos
Aedes , Microbiota , Humanos , Animais , Aedes/fisiologia , Larva , Água , Mosquitos Vetores
12.
Ecol Appl ; 32(4): e2576, 2022 06.
Artigo em Inglês | MEDLINE | ID: mdl-35191107

RESUMO

Biodiversity-benefits of organic farming have mostly been documented at the field scale. However, these benefits from organic farming to species diversity may not propagate to larger scales because variation in the management of different crop types and seminatural habitats in conventional farms might allow species to cope with intensive crop management. We studied flowering plant communities using a spatially replicated design in different habitats (cereal, ley and seminatural grasslands) in organic and conventional farms, distributed along a gradient in proportion of seminatural grasslands. We developed a novel method to compare the rates of species turnover within and between habitats, and between the total species pools in the two farming systems. We found that the intrahabitat species turnover did not differ between organic and conventional farms, but that organic farms had a significantly higher interhabitat turnover of flowering plant species compared with conventional ones. This was mainly driven by herbicide-sensitive species in cereal fields in organic farms, as these contained 2.5 times more species exclusive to cereal fields compared with conventional farms. The farm-scale species richness of flowering plants was higher in organic compared with conventional farms, but only in simple landscapes. At the interfarm level, we found that 36% of species were shared between the two farming systems, 37% were specific to organic farms whereas 27% were specific to conventional ones. Therefore, our results suggest that that both community nestedness and species turnover drive changes in species composition between the two farming systems. These large-scale shifts in species composition were driven by both species-specific herbicide and nitrogen sensitivity of plants. Our study demonstrates that organic farming should foster a diversity of flowering plant species from local to landscape scales, by promoting unique sets of arable-adapted species that are scarce in conventional systems. In terms of biodiversity conservation, our results call for promoting organic farming over large spatial extents, especially in simple landscapes, where such transitions would benefit plant diversity most.


Assuntos
Herbicidas , Agricultura Orgânica , Agricultura/métodos , Biodiversidade , Ecossistema , Agricultura Orgânica/métodos , Plantas
13.
Microb Ecol ; 84(3): 893-900, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34617123

RESUMO

Microorganisms live in close association with metazoan hosts and form symbiotic microbiotas that modulate host biology. Although the function of host-associated microbiomes may change with composition, hosts within a population can exhibit high turnover in microbiome composition among individuals. However, environmental drivers of this variation are inadequately described. Here, we test the hypothesis that this diversity among the microbiomes of Aedes albopictus (a mosquito disease vector) is associated with the local climate and land-use patterns on the high Pacific island of O 'ahu, Hawai 'i. Our principal finding demonstrates that the relative abundance of several bacterial symbionts in the Ae. albopictus microbiome varies in response to a landscape-scale moisture gradient, resulting in the turnover of the mosquito microbiome composition across the landscape. However, we find no evidence that mosquito microbiome diversity is tied to an index of urbanization. This result has implications toward understanding the assembly of host-associated microbiomes, especially during an era of rampant global climate change.


Assuntos
Aedes , Microbiota , Animais , Humanos , Aedes/microbiologia , Mosquitos Vetores/fisiologia , Vetores de Doenças , Urbanização
14.
BMC Biol ; 19(1): 202, 2021 09 14.
Artigo em Inglês | MEDLINE | ID: mdl-34521395

RESUMO

BACKGROUND: The world's fast disappearing mangrove forests have low plant diversity and are often assumed to also have a species-poor insect fauna. We here compare the tropical arthropod fauna across a freshwater swamp and six different forest types (rain-, swamp, dry-coastal, urban, freshwater swamp, mangroves) based on 140,000 barcoded specimens belonging to ca. 8500 species. RESULTS: We find that the globally imperiled habitat "mangroves" is an overlooked hotspot for insect diversity. Our study reveals a species-rich mangrove insect fauna (>3000 species in Singapore alone) that is distinct (>50% of species are mangrove-specific) and has high species turnover across Southeast and East Asia. For most habitats, plant diversity is a good predictor of insect diversity, but mangroves are an exception and compensate for a comparatively low number of phytophagous and fungivorous insect species by supporting an unusually rich community of predators whose larvae feed in the productive mudflats. For the remaining tropical habitats, the insect communities have diversity patterns that are largely congruent across guilds. CONCLUSIONS: The discovery of such a sizeable and distinct insect fauna in a globally threatened habitat underlines how little is known about global insect biodiversity. We here show how such knowledge gaps can be closed quickly with new cost-effective NGS barcoding techniques.


Assuntos
Biodiversidade , Insetos , Plantas , Animais , Ecossistema , Florestas , Áreas Alagadas
15.
Int J Mol Sci ; 23(15)2022 Jul 26.
Artigo em Inglês | MEDLINE | ID: mdl-35897785

RESUMO

Alzheimer's disease (AD) is a multifactorial pathology characterized by ß-amyloid (Aß) deposits, Tau hyperphosphorylation, neuroinflammatory response, and cognitive deficit. Changes in the bacterial gut microbiota (BGM) have been reported as a possible etiological factor of AD. We assessed in offspring (F1) 3xTg, the effect of BGM dysbiosisdysbiosis in mothers (F0) at gestation and F1 from lactation up to the age of 5 months on Aß and Tau levels in the hippocampus, as well as on spatial memory at the early symptomatic stage of AD. We found that BGM dysbiosisdysbiosis with antibiotics (Abx) treatment in F0 was vertically transferred to their F1 3xTg mice, as observed on postnatal day (PD) 30 and 150. On PD150, we observed a delay in spatial memory impairment and Aß deposits, but not in Tau and pTau protein in the hippocampus at the early symptomatic stage of AD. These effects are correlated with relative abundance of bacteria and alpha diversity, and are specific to bacterial consortia. Our results suggest that this specific BGM could reduce neuroinflammatory responses related to cerebral amyloidosis and cognitive deficit and activate metabolic pathways associated with the biosynthesis of triggering or protective molecules for AD.


Assuntos
Doença de Alzheimer , Microbioma Gastrointestinal , Doença de Alzheimer/metabolismo , Peptídeos beta-Amiloides/metabolismo , Animais , Antibacterianos/farmacologia , Antibacterianos/uso terapêutico , Modelos Animais de Doenças , Disbiose/complicações , Disbiose/tratamento farmacológico , Feminino , Inflamação/complicações , Transtornos da Memória/complicações , Transtornos da Memória/etiologia , Camundongos , Camundongos Transgênicos , Proteínas tau/metabolismo
16.
J Environ Manage ; 304: 114186, 2022 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-34864406

RESUMO

Pollinating insects are under high human pressure due to agricultural intensification and urbanization. Although many research and conservation projects have been applied worldwide, there is still a need for a comprehensive approach that meets local conditioning and capabilities. This paper investigated the composition, abundance, richness, alpha, beta, and gamma-diversity of pollinators between unused railway embankments and semi-natural grasslands. On 50 study sites (25 sites in unused railways and 25 their reference on grasslands), we collected data on the abundance, species richness and species diversity of bees, butterflies, and hoverflies. We conducted five samplings yearly (April-September) for two years, 2017-2018. To assess differences in abundance, species richness, alpha and beta diversity of pollinators between unused railways and controls, we used generalized linear mixed models (GLMM). To compare the composition of pollinator species, we applied non-metric multidimensional scaling (NMDS). Abundance, species richness, and Shannon-Wiener diversity index of all three groups of pollinators were significantly higher in unused railway lines than in control grasslands. Pollinator communities were more constant in unused railway lines than in grasslands. The NMDS analysis highlighted the importance of these structures for bee, butterfly and hoverfly communities, which were a subset of grassland species, but were more abundant. We indicated the highest total taxonomic beta-diversity for bees, butterflies, and hoverflies and species turnover for bees and butterflies in control grassland compared with unused railway lines. The taxonomical nestedness was significantly higher in unused railways lines for bees and butterflies than in control grasslands. In the case of hoverflies, we did not found any significant differences in species turnover and nestedness. Unused railway lines may act as a conservation tool for pollinator communities in intensively managed farmland and complement the declining semi-natural habitats.


Assuntos
Borboletas , Agricultura , Animais , Abelhas , Ecossistema , Fazendas , Insetos
17.
Am J Epidemiol ; 190(3): 439-447, 2021 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-32976571

RESUMO

A simple method to analyze microbiome beta-diversity computes mean beta-diversity distances from a test sample to standard reference samples. We used reference stool and nasal samples from the Human Microbiome Project and regressed an outcome on mean distances (2 degrees-of-freedom (df) test) or additionally on squares and cross-product of mean distances (5-df test). We compared the power of 2-df and 5-df tests with the microbiome regression-based kernel association test (MiRKAT). In simulations, MiRKAT had moderately greater power than the 2-df test for discriminating skin versus saliva and skin versus nasal samples, but differences were negligible for skin versus stool and stool versus nasal samples. The 2-df test had slightly greater power than MiRKAT for Dirichlet multinomial samples. In associating body mass index with beta-diversity in stool samples from the American Gut Project, the 5-df test yielded smaller P values than MiRKAT for most taxonomic levels and beta-diversity measures. Unlike procedures like MiRKAT that are based on the beta-diversity matrix, mean distances to reference samples can be analyzed with standard statistical tools and shared or meta-analyzed without sharing primary DNA data. Our data indicate that standard reference tests have power comparable to MiRKAT's (and to permutational multivariate analysis of variance), but more simulations and applications are needed to confirm this.


Assuntos
Índice de Massa Corporal , Microbiota/fisiologia , Fezes/microbiologia , Humanos , Nariz/microbiologia , Padrões de Referência , Saliva/microbiologia , Pele/microbiologia
18.
Proc Biol Sci ; 288(1948): 20203045, 2021 04 14.
Artigo em Inglês | MEDLINE | ID: mdl-33849320

RESUMO

The decline in species richness at higher latitudes is among the most fundamental patterns in ecology. Whether changes in species composition across space (beta-diversity) contribute to this gradient of overall species richness (gamma-diversity) remains hotly debated. Previous studies that failed to resolve the issue suffered from a well-known tendency for small samples in areas with high gamma-diversity to have inflated measures of beta-diversity. Here, we provide a novel analytical test, using beta-diversity metrics that correct the gamma-diversity and sampling biases, to compare beta-diversity and species packing across a latitudinal gradient in tree species richness of 21 large forest plots along a large environmental gradient in East Asia. We demonstrate that after accounting for topography and correcting the gamma-diversity bias, tropical forests still have higher beta-diversity than temperate analogues. This suggests that beta-diversity contributes to the latitudinal species richness gradient as a component of gamma-diversity. Moreover, both niche specialization and niche marginality (a measure of niche spacing along an environmental gradient) also increase towards the equator, after controlling for the effect of topographical heterogeneity. This supports the joint importance of tighter species packing and larger niche space in tropical forests while also demonstrating the importance of local processes in controlling beta-diversity.


Assuntos
Biodiversidade , Árvores , Ecologia , Ásia Oriental
19.
Proc Biol Sci ; 288(1949): 20210343, 2021 04 28.
Artigo em Inglês | MEDLINE | ID: mdl-33878923

RESUMO

The observed patterns and underlying mechanisms of elevational beta-diversity have been explored intensively, but multi-dimensional comparative studies remain scarce. Herein, across distinct beta-diversity components, dimensions and species groups, we designed a multi-faceted comparative framework aiming to reveal the general rules in the observed patterns and underlying causes of elevational beta-diversity. We have found that: first, the turnover process dominated altitudinal patterns of species beta-diversity (ßsim > ßsne), whereas the nestedness process appeared relatively more important for elevational trait dissimilarity (ßfuncsim < ßfuncsne); second, the taxonomic turnover was relative higher than its phylogenetic and functional analogues (ßsim > ßphylosim/ßfuncsim), conversely, nestedness-resultant trait dissimilarity tended to be higher than the taxonomic and phylogenetic measures (ßfuncsne > ßsne/ßphylosne); and third, as elevational distance increased, the contradicting dynamics of environmental filtering and limiting similarity have jointly led the elevational patterns of beta-diversity, especially at taxonomic dimension. Based on these findings, we infer that the species turnover among phylogenetic relatives sharing similar functional attributes appears to be the main cause of shaping the altitudinal patterns of multi-dimensional beta-diversity. Owing to the methodological limitation in the randomization approach, currently, it remains extremely challenging to distinguish the influence of the neutral process from the offset between opposing niche-based processes. Despite the complexities and uncertainties during species assembling, with a multi-dimensional comparative perspective, this work offers us several important commonalities of elevational beta-diversity dynamics.


Assuntos
Biodiversidade , Fenótipo , Filogenia
20.
Glob Chang Biol ; 27(20): 4980-4994, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34157186

RESUMO

Urbanization is a major driver of land use change and biodiversity decline. While most of the ongoing and future urbanization hotspots are located in the Global South, the impact of urban expansion on agricultural biodiversity and associated functions and services in these regions has widely been neglected. Additionally, most studies assess biodiversity responses at local scale (α-diversity), however, ecosystem functioning is strongly determined by compositional and functional turnover of communities (ß-diversity) at regional scales. We investigated taxonomic and functional ß-diversity of farmland birds across three seasons on 36 vegetable farms spread along a continuous urbanization gradient in Bangalore, a South Indian megacity. Increasing amount of grey area in the farm surroundings was the dominant driver affecting ß-diversity and resulting in taxonomic and functional homogenization of farmland bird communities. Functional diversity losses were higher than expected from species declines (i.e., urbanization acts as an environmental filter), with particular losses of functionally important groups such as insectivores of crop pests. Moreover, urbanization reduced functional redundancy of bird communities, which may further weaken ecosystems resilience to future perturbations. Our study underscores urbanization as a major driver of taxonomic and functional homogenization of species communities in agricultural systems, potentially threatening crucial ecosystem services for food production.


Assuntos
Ecossistema , Urbanização , Animais , Biodiversidade , Aves , Fazendas , Índia
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