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1.
J Comput Chem ; 45(4): 204-209, 2024 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-37752737

RESUMO

The DFT-level computational investigations into Gibbs free energies (ΔG) demonstrate that as the dielectric constant of the solvent increases, the stabilities of [M(NH3 )n ]2+/3+ (n = 4, 6; M = selected 3d transition metals) complexes decrease. However, there is no observed correlation between the stability of the complex and the solvent donor number. Analysis of the charge transfer and Wiberg bond indices indicates a dative-bond character in all the complexes. The solvent effect assessed through solvation energy is determined by the change in the solvent accessible surface area (SASA) and the change in the charge distribution that occurs during complex formation. It has been observed that the SASA and charge transfer are different in the different coordination numbers, resulting in a variation in the solvent effect on complex stability in different solvents. This ultimately leads to a change between the relative stability of complexes with different coordination numbers while increasing the solvent polarity for a few complexes. Moreover, the findings indicate a direct relationship between ΔΔG (∆Gsolvent -∆Ggas ) and ΔEsolv , which enables the computation of ΔG for the compounds in a particular solvent using only ΔGgas and ΔEsolv . This approach is less computationally expensive.

2.
Chemistry ; 30(17): e202304136, 2024 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-38206568

RESUMO

Quantum chemical calculations of the anions AeF- (Ae=Be-Ba) have been carried out using ab initio methods at the CCSD(T)/def2-TZVPP level and density functional theory employing BP86 with various basis sets. The detailed bonding analyses using different charge- and energy partitioning methods show that the molecules possess three distinctively different dative bonds in the lighter species with Ae=Be, Mg and four dative bonds when Ae=Ca, Sr, Ba. The occupied 2p atomic orbitals (AOs) and to a lesser degree the occupied 2s AO of F- donate electronic charge into the vacant spx(σ) and p(π) orbitals of Be and Mg which leads to a triple bond Ae F-. The heavier Ae atoms Ca, Sr, Ba use their vacant (n-1)d AOs as acceptor orbitals which enables them to form a second σ donor bond with F- that leads to quadruply bonded Ae F- (Ae=Ca-Ba). The presentation of molecular orbitals or charge distribution using only one isodensity value may give misleading information about the overall nature of the orbital or charge distribution. Better insights are given by contour line diagrams. The ELF calculations provide monosynaptic and disynaptic basins of AeF- which nicely agree with the analysis of the occupied molecular orbitals and with the charge density difference maps. A particular feature of the covalent bonds in AeF- concerns the inductive interaction of F- with the soft valence electrons in the (n)s valence orbitals of Ae. The polarization of the (n)s2 electrons induces a (n)spx hybridized lone-pair orbital at atom Ae, which yields a large dipole moment with the negative end at Ae. The concomitant formation of a vacant (n)spx AO of atom Ae, which overlaps with the occupied 2p(σ) AO of F-, leads to a strong covalent σ bond.

3.
Molecules ; 29(11)2024 Jun 06.
Artigo em Inglês | MEDLINE | ID: mdl-38893559

RESUMO

The existence of the N→C dative bonds in the complexes between N-containing molecules and fullerenes have been verified both theoretically and experimentally. However, finding stable N→C dative bonds is still a highly challenging task. In this work, we investigated computationally the N→C dative bonds in the complexes formed by fullerene C60 with 1,2,5-chalcogenadiazoles, 2,1,3-benzochalcogenadiazoles, and 1,2,4,5-chalcogenatriazoles, respectively. It was found that the N→C dative bonds are formed along with the formation of the N-Ch···C (Ch = S, Se, Te) chalcogen bonds. In the gas phase, from S-containing complexes through Se-containing complexes to Te-containing complexes, the intrinsic interaction energies become more and more negative, which indicates that the N-Ch···C chalcogen bonds can facilitate the formation of the N→C dative bonds. The intrinsic interaction energies are compensated by the large deformation energy of fullerene C60. The total interaction energies of Te-containing complexes are negative, while both total interaction energies of the S-containing complexes and Se-containing complexes are positive. This means that the N→C dative bonds in the Te-containing complexes are more easily observed in experiments in comparison with those in the S-containing complexes and Se-containing complexes. This study provides a new theoretical perspective on the experimental observation of the N→C dative bonds in complexes involving fullerenes. Further, the formation of stable N→C dative bonds in the complexes involving fullerenes can significantly change the properties of fullerenes, which will greatly simulate and expand the application range of fullerenes.

4.
Chemistry ; 29(35): e202300635, 2023 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-37066846

RESUMO

The present work aims to determine to what extent the value of the dielectric constant of the solvent can influence the dative bond in Lewis electron pair bonding systems. For this purpose, two different systems, namely H3 B←NH3 and {Zn←(NH3 )}2+ , were studied in selected solvents with significantly different dielectric constants. Based on the results from state-of-the-art computational methods using DFT, constrained DFT, energy decomposition analyses, solvent accessible surface area, and charge transfer calculations, we found that the stability of the neutral H3 B←NH3 system increases with increasing solvent polarity. In contrast, the opposite trend is observed for the positively charged {Zn←(NH3 )}2+ . The observed changes are attributed to different charge redistributions in neutral and charged complexes, which are reflected by a different response to the solvent and are quantified by changes in solvation energies.


Assuntos
Elétrons , Solventes
5.
Chemphyschem ; 24(19): e202300403, 2023 Oct 04.
Artigo em Inglês | MEDLINE | ID: mdl-37450354

RESUMO

Formation of a genuine chemical bond between two similarly charged fragments is beyond expectation. Any such interaction generally lies in the realm of non-covalent interaction. Herein, formation of a strong dative covalent bond between two anionic fragments is reported for the first time. Calculation using ab initio coupled cluster theory reveals the formation of an unprecedented strong H3 Be- ←X- (X- =CH3 - , CN- , OH- , F- ) dative covalent bond. The calculated bond dissociation energies in polar solvents are significant, which indicates the possibility of their experimental realization.

6.
Angew Chem Int Ed Engl ; 62(21): e202303379, 2023 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-36959096

RESUMO

Although examples of multiple bonds between actinide elements and main-group elements are quite common, studies of the multiple bonds between actinide elements and transition metals are extremely rare owing to difficulties associated with their synthesis. Here we report the first example of molecular uranium complexes featuring a cis-[M → → ${{\rm{ \mathbin{{\stackrel{\textstyle\rightarrow} { {\smash{\rightarrow}\vphantom{_{\vbox to.5ex{\vss}}}} } }} }}}$ U ← ← ${{\rm{ \mathbin{{\stackrel{\textstyle\leftarrow} { {\smash{\leftarrow}\vphantom{_{\vbox to.5ex{\vss}}}} } }} }}}$ M] core (M=Rh, Ir), which exhibits an unprecedented arrangement of two M → → ${{\rm{ \mathbin{{\stackrel{\textstyle\rightarrow} { {\smash{\rightarrow}\vphantom{_{\vbox to.5ex{\vss}}}} } }} }}}$ U double dative bond linkages to a single U center. These complexes were prepared by the reactions of chlorine-bridged heterometallic complexes [{U{N(CH3 )(CH2 CH2 NPi Pr2 )2 }(Cl)2 [(µ-Cl)M(COD)]2 }] (M=Rh, Ir) with MeMgBr or MeLi, a new method for the construction of species with U-M multiple bonds. Theoretical calculations including dispersion confirmed the presence of two U ← ← ${{\rm{ \mathbin{{\stackrel{\textstyle\leftarrow} { {\smash{\leftarrow}\vphantom{_{\vbox to.5ex{\vss}}}} } }} }}}$ M double dative bonds in these complexes. This study not only enriches the U ← ← ${{\rm{ \mathbin{{\stackrel{\textstyle\leftarrow} { {\smash{\leftarrow}\vphantom{_{\vbox to.5ex{\vss}}}} } }} }}}$ M multiple bond chemistry, but also provides a new opportunity to explore the bonding of actinide elements.

7.
J Comput Chem ; 43(23): 1543-1560, 2022 Sep 05.
Artigo em Inglês | MEDLINE | ID: mdl-35861589

RESUMO

Arenes [C6 H3 R(TMS)(OTf); also called benzyne/aryne precursors] containing inter-related leaving groups Me3 Si (TMS) and CF3 SO3 (OTf) on the adjacent positions (1,2-position) are generally converted to their corresponding aryne-intermediates via the addition of fluoride anion (F- ) and subsequent elimination of TMS and OTf groups. This reaction is believed to proceed via the formation of an anionic intermediate [C6 H4 (TMS-F)(OTf)]- . The EDA-NOCV analysis (EDA-NOCV = energy decomposition analysis-natural orbital for chemical valence) of over 35 such precursors of varied types have been reported to reveal bonding and stability of CAr Si and COTf bonds. EDA-NOCV showed that the nature of the CAr Si bond of C6 H3 R(TMS)(OTf) can be expressed as both dative and electron sharing [CAr Si, CAr →Si]. The CAr OTf bond, on the other hand, can be described explicitly as dative [CAr ←OTf]. The nature of CAr Si bond of [C6 H4 (TMS-F)(OTf)]- exclusively changes to covalent dative σ-bond CAr →S(Me)3F on the attachment of F- to the TMS group of C6 H4 (TMS)(OTf). Introduction of σ-electron withdrawing group (like OMe, NMe2 , and NO2 ) to the ortho-position of the TMS group of functionalized arynes C6 H3 R(TMS)(OTf) prefer to have a covalent dative σ-bond (CAr →Si) over an electron-sharing covalent σ-bond (CAr Si). If this σ-electron withdrawing group is shifted from ortho-position to meta- and para-positions, then the preference for a dative bond decreases significantly, implying that the electronic effect on the nature of chemical bonds affects through bond paths. This effect dies with distance, similar to the well-known inductive effect.

8.
Molecules ; 27(23)2022 Dec 02.
Artigo em Inglês | MEDLINE | ID: mdl-36500544

RESUMO

Twenty-five molecule-anion complex systems [I4Tt···X-] (Tt = C, Si, Ge, Sn and Pb; X = F, Cl, Br, I and At) were examined using density functional theory (ωB97X-D) and ab initio (MP2 and CCSD) methods to demonstrate the ability of the tetrel atoms in molecular entities, I4Tt, to recognize the halide anions when in close proximity. The tetrel bond strength for the [I4C···X-] series and [I4Tt···X-] (Tt = Si, Sn; X = I, At), was weak-to-moderate, whereas that in the remaining 16 complexes was dative tetrel bond type with very large interaction energies and short Tt···X close contact distances. The basis set superposition error corrected interaction energies calculated with the highest-level theory applied, [CCSD(T)/def2-TZVPPD], ranged from -3.0 to -112.2 kcal mol-1. The significant variation in interaction energies was realized as a result of different levels of tetrel bonding environment between the interacting partners at the equilibrium geometries of the complex systems. Although the ωB97X-D computed intermolecular geometries and interaction energies of a majority of the [I4Tt···X-] complexes were close to those predicted by the highest level of theory, the MP2 results were shown to be misleading for some of these systems. To provide insight into the nature of the intermolecular chemical bonding environment in the 25 molecule-anion complexes investigated, we discussed the charge-density-based topological and isosurface features that emanated from the application of the quantum theory of atoms in molecules and independent gradient model approaches, respectively.


Assuntos
Teoria Quântica , Termodinâmica , Modelos Moleculares , Ânions
9.
Angew Chem Int Ed Engl ; 61(29): e202204383, 2022 07 18.
Artigo em Inglês | MEDLINE | ID: mdl-35499909

RESUMO

Non-conjugated fluorescent polymers have attracted great attention due to their excellent biocompatibility and environmental friendliness. However, it remains a huge challenge to obtain a polymer with high fluorescence quantum yield (QY) and multicolor emission simultaneously. Herein, we reported three kinds of nonaromatic hyperbranched polyborates (P1-P3) with multicolor emission, surprisingly, P2 also exhibits an unanticipated high QY (54.1 %). The natural bond orbital (NBO) analysis and density functional theory (DFT) calculation results revealed that the synergistic effect of rigid BO3 planar and flexible carbon chain, as well as the through-space dative bond in supramolecular aggregate, were the key factors contributing to the ultrahigh QY of P2. Moreover, the applications of P2 in Fe3+ ions detection and cell imaging were also investigated. This work provides a new perspective for designing non-conjugated fluorescent polymers with both high QY and multicolor emission.


Assuntos
Polímeros , Pontos Quânticos , Carbono/química , Fluorescência , Corantes Fluorescentes/química , Polímeros/química , Pontos Quânticos/química
10.
Chemphyschem ; 22(18): 1857-1862, 2021 09 15.
Artigo em Inglês | MEDLINE | ID: mdl-34245098

RESUMO

Some nitrile-boron halide adducts exhibit a double-well potential energy surface with two distinct minima: a "long bond" geometry (LB, a van der Waals interaction mostly based on electrostatics, but including a residual charge transfer component) and a "short bond" structure (SB, a covalent dative bond). This behavior can be considered as a "weak" form of bond stretch isomerism. Our computations reveal that complexes RCN-BX3 (R=CH3 , FCH2 , BrCH2 , and X=Cl, Br) exhibit a fast interconversion from LB to SB geometries even close to the absolute zero thanks to a boron atom tunneling mechanism. The computed half-lives of the meta-stable LB compounds vary between minutes to nanoseconds at cryogenic conditions. Accordingly, we predict that the long bond structures are practically impossible to isolate or characterize, which agrees with previous matrix-isolation experiments.

11.
Chemistry ; 26(72): 17350-17355, 2020 Dec 23.
Artigo em Inglês | MEDLINE | ID: mdl-32537790

RESUMO

The reaction of Pd(OAc)2 with free carbodicarbene (CDC) generates a Pd acetate trinuclear complex 1 via intramolecular C(sp3 )-H bond activation at one of the CDC methyl side arms. The solid structure of 1 reveals the capability of CDC to facilitate a double dative bond with two palladium centers in geminal fashion. This is attributed to the chelating mode of CDC, which can frustrate π-conjugation within the CDC framework. Such effect maybe also amplified by ligand-ligand interaction. The formation of other gem-bimetallic Pd-Pd, Pd-Au, and Ni-Au provides further structural evidence for this proof-of-concept in selective installation. Structural analysis is supported by computational calculations based on state-of-the-art energy decomposition analysis (EDA) in conjunction with natural orbitals for chemical valence (NOCV) method.

12.
Chemistry ; 26(4): 759-772, 2020 Jan 16.
Artigo em Inglês | MEDLINE | ID: mdl-31536146

RESUMO

Dative Bond (IUPAC): "The coordination bond formed upon interaction between molecular species, one of which serves as a donor and the other as an acceptor of the electron pair to be shared in the complex formed… The distinctive feature of dative bonds is that their minimum-energy rupture in the gas phase or in inert solvent follows the heterolytic bond cleavage path." This definition encompasses an immense number of molecules such as Lewis adducts, transition-metal complexes, supposedly hypervalent or hypovalent systems, and many molecules with multifaceted Lewis structures. Still, there is a large reticence to include dative bonds in the regular depiction of molecules, and even a larger unawareness of the dative bond arrow in many chemical circles. Herein we will discuss in simple chemical terms the past, present and future of such bonds. In addition, we will try to provide cleaner options to represent intricate molecules without sacrificing physical accuracy.

13.
Chemistry ; 26(70): 16833-16845, 2020 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-32722855

RESUMO

Metal-only Lewis pairs (MOLPs) in which the two metal fragments are solely connected by a dative M→M bond represent privileged architectures to acquire fundamental understanding of bimetallic bonding. This has important implications in many catalytic processes or supramolecular systems that rely on synergistic effects between two metals. However, a systematic experimental/computational approach on a well-defined class of compounds is lacking. Here we report a family of MOLPs constructed around the RhI precursor [(η5 -C5 Me5 )Rh(PMe3 )2 ] (1) with a series of s, p and d-block metals, mostly from the main group elements, and investigate their bonding by computational means. Among the new MOLPs, we have structurally characterized those formed by dative bonding between 1 and MgMeBr, AlMe3 , GeCl2 , SnCl2 , ZnMe2 and Zn(C6 F5 )2, as well as spectroscopically identified the ones resulting from coordination to MBArF (M=Na, Li; BArF - =[B(C6 H2 -3,5-(CF3 )2 )4 ]- ) and CuCl. Some of these compounds represent unique examples of bimetallic structures, such as the first unambiguous cases of Rh→Mg dative bonding or base-free rhodium bound germylene and stannylene species. Multinuclear NMR spectroscopy, including 103 Rh NMR, is used to probe the formation of Rh→M bonds. A comprehensive theoretical analysis of those provides clear trends. As anticipated, greater bond covalency is found for the more electronegative acids, whereas ionic character dominates for the least electronegative nuclei, though some degree of electron sharing is identified in all cases.

14.
Angew Chem Int Ed Engl ; 59(23): 8760-8764, 2020 Jun 02.
Artigo em Inglês | MEDLINE | ID: mdl-32350985

RESUMO

We reply to the comment by S. Pan and G. Frenking who challenged our interpretation of the Na- :→BH3 dative bond in the recently synthesized NaBH3 - cluster. Our conclusion remains the same as that in our original paper (https://doi.org/10.1002/anie.201907089 and https://doi.org/10.1002/ange.201907089). This conclusion is additionally supported by the energetic pathways and NBO charges calculated at UCCSD and CASMP2(4,4) levels of theory. We also discussed the suitability of the Laplacian of electron density (QTAIM) and Adaptive Natural Density Partitioning (AdNDP) method for bond type assignment. It seems that AdNDP yields more sensible results. This discussion reveals that the complex realm of bonding is full of semantic inconsistencies, and we invite experimentalists and theoreticians to elaborate this topic and find solutions incorporating different views on the dative bond.

15.
Chemphyschem ; 18(1): 34-38, 2017 Jan 04.
Artigo em Inglês | MEDLINE | ID: mdl-27860127

RESUMO

Intermediate states to covalent attachment of molecules on surfaces, so called precursors, are usually considered to be physisorbed and mobile. We show that this view should be reconsidered and provide evidence for a chemisorbed precursor for ethylene on Si(001). The character of the molecule-surface bond as a π complex is determined and quantified using our recently developed method for energy and charge analysis in extended systems. In contrast to previous assumptions, the precursor should thus be immobile, which is underlined by computation of high diffusion energy barriers. This has important implications for understanding and modelling of adsorption kinetics. Our analysis highlights that taking the viewpoint of molecular chemistry helps uncover important aspects in the adsorption process on surfaces. Previous experimental results that appear to be in contrast to our model are examined and reinterpreted.

16.
Chemistry ; 21(20): 7520-31, 2015 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-25820876

RESUMO

A series of phosphine-stibine and phosphine-stiborane peri-substituted acenaphthenes containing all permutations of pentavalent groups -SbCln Ph4-n (5-9), as well as trivalent groups -SbCl2 , -Sb(R)Cl, and -SbPh2 (2-4, R=Ph, Mes), were synthesised and fully characterised by single crystal diffraction and multinuclear NMR spectroscopy. In addition, the bonding in these species was studied by DFT computational methods. The P-Sb dative interactions in both series range from strongly bonding to non-bonding as the Lewis acidity of the Sb acceptor is decreased. In the pentavalent antimony series, a significant change in the P-Sb distance is observed between -SbClPh3 and -SbCl2 Ph2 derivatives 6 and 7, respectively, consistent with a change from a bonding to a non-bonding interaction in response to relatively small modification in Lewis acidity of the acceptor. In the Sb(III) series, two geometric forms are observed. The P-Sb bond length in the SbCl2 derivative 2 is as expected for a normal (rather than a dative) bond. Rather unexpectedly, the phosphine-stiborane complexes 5-9 represent the first examples of the σ(4) P→σ(6) Sb structural motif.

17.
ACS Appl Mater Interfaces ; 16(14): 18112-18123, 2024 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-38547870

RESUMO

Boron doping of diamond-like carbon coatings has multiple effects on their tribological properties. While boron typically reduces wear in cutting applications, some B-doped coatings show poor tribological performance compared with undoped films. This is the case of the tribological tests presented in this work in which an alumina ball is placed in frictional contact with different undoped and B-doped amorphous carbon coatings in humid air. With B-doped coatings, a higher friction coefficient at a steady state with respect to their undoped counterparts was observed. Estimates of the average contact shear stress based on experimental friction coefficients, surface topographies, and Persson's contact theory suggest that the increased friction is compatible with the formation of a sparse network of interfacial ether bonds leading to a mild cold-welding friction regime, as documented in the literature. Tight binding and density functional theory simulations were performed to investigate the chemical effect of B-doping on the interfacial properties of the carbon coatings. The results reveal that OH groups that normally passivate carbon surfaces in humid environments can be activated by boron and form B-O dative bonds across the tribological interfaces, leading to a mild cold-welding friction regime. Simulations performed on different tribological pairs suggest that this mechanism could be valid for B-doped carbon surfaces in contact with a variety of materials. In general, this study highlights the impact that subtle modifications in surface and interface chemistry caused by the presence of impurities can have on macroscopic properties, such as friction and wear.

18.
J Mol Model ; 24(10): 283, 2018 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-30229356

RESUMO

This study consists of the theoretical analysis of some organic molecules and their inorganic similar compounds, through substitution of two carbon atoms by boron and nitrogen atoms. The methods DFT/B3-LYP/TZVPP and CC2/TZVPP were considered. Firstly, ethane, ethene, and ethyne molecules (based on C atoms and their BN/NB analogs) were studied. These molecules were considered as a reference for the analysis of other molecules with functional groups. These molecules with functional groups are: ethanol, ethanal (and its isomer ethenol), ethanoic acid (and its isomer ethenediol), ethylamine, ethylbenzene, propane, and fluoroethane. We studied the energies, bond length, population analysis, and bond order. The dative bonds (BN) are bigger and weaker than that covalent based on C atoms. The dative bond has π character when the BN bond is double and triple. It is possible to distinguish two different behaviors for BN bonds, one when the functional group is bounded to the B atom, and the other to the N atom. When the functional group is bounded to the B atom, the BN bond is weaker and lengthier than that when the same group is bounded to the N atom. However, the isomer with weaker BN bond is the most stable one. Graphical abstract Comparative studies of dative bonds among substituted inorganic molecules, e.g., BN-ethanol, show important differences in terms of length and energy in comparison to organic analogous. There is also a difference when comparing BN or NB molecules (according to witch atom the functional group is bonded to, B or N); bond length, for example, is bigger for BN molecules.

19.
Acta Crystallogr E Crystallogr Commun ; 73(Pt 12): 1917-1920, 2017 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-29250415

RESUMO

The title compound, C26H23BN2O2, was obtained as by product during synthetic attempts of a complexation reaction between the tripodal ligand H2L [N,N-bis-(2-hy-droxy-benz-yl)(pyridin-2-yl)methyl-amine] and manganese(III) acetate in the presence of NaBPh4. The isolated B-phenyl dioxaza-borocine contains an N→B dative bond with a cis conformation. In the crystal, C-H⋯O hydrogen bonds define chains parallel to the b-axis direction. A comparative analysis with other structurally related derivatives is also included, together with a rationalization of the unexpected production of this zwitterionic heterocycle.

20.
Acta Crystallogr E Crystallogr Commun ; 72(Pt 12): 1687-1690, 2016 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-27980810

RESUMO

In the title compound, also known as 3,5-lutidine N-oxide dihydrate, C7H9NO·2H2O, the N-O bond is weakened due to the involvement of the O atom as an acceptor of hydrogen bonds from the two water mol-ecules of crystallization present in the asymmetric unit. Fused R35(10) ring motifs based on O-H⋯O hydrogen bonds form chains in the [010] direction, which are further connected by weak C-H⋯O inter-molecular contacts. As a result, the lutidine mol-ecules are stacked in an efficient manner, with π-π contacts characterized by a short separation of 3.569 (1) Šbetween the benzene rings.

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