Functionally discrete fine roots differ in microbial assembly, microbial functional potential, and produced metabolites.

Traditionally, fine roots were grouped using arbitrary size categories, rarely capturing the heterogeneity in physiology, morphology and functionality among different fine root orders. Fine roots with different functional roles are rarely separated in microbiome-focused studies and may result in confounding microbial signals and host-filtering across different root microbiome compartments. Using a 26-year-old common garden, we sampled fine roots from four temperate tree species that varied in root morphology and sorted them into absorptive and transportive fine roots. The rhizoplane and rhizosphere were characterized using 16S rRNA gene and internal transcribed spacer region amplicon sequencing and shotgun metagenomics for the rhizoplane to identify potential microbial functions. Fine roots were subject to metabolomics to spatially characterize resource availability. Both fungi and bacteria differed according to root functional type. We observed additional differences between the bacterial rhizoplane and rhizosphere compartments for absorptive but not transportive fine roots. Rhizoplane bacteria, as well as the root metabolome and potential microbial functions, differed between absorptive and transportive fine roots, but not the rhizosphere bacteria. Functional differences were driven by sugar transport, peptidases and urea transport. Our data highlights the importance of root function when examining root-microbial relationships, emphasizing different host selective pressures imparted on different root microbiome compartments.

Transcriptome of Cenostigma pyramidale roots, a woody legume, under different salt stress times.

Salinity stress has a significant impact on the gain of plant biomass. Our study provides the first root transcriptome of Cenostigma pyramidale, a tolerant woody legume from a tropical dry forest, under three different salt stress times (30 min, 2 h, and 11 days). The transcriptome was assembled using the RNA sequencing (RNA-Seq) de novo pipeline from GenPipes. We observed 932, 804, and 3157 upregulated differentially expressed genes (DEGs) and 164, 273, and 1332 downregulated DEGs for salt over 30 min, 2 h, and 11 days, respectively. For DEGs annotated with the Viridiplantae clade in the early stress periods, the response to salt stress was mainly achieved by stabilizing homeostasis of such ions like Na+ and K+ , signaling by Ca2+ , transcription factor modulation, water transport, and oxidative stress. For salt stress at 11 days, we observed a higher modulation of transcription factors including the WRKY, MYB, bHLH, NAC, HSF, and AP2-EREBP families, as well as DEGs involved in hormonal responses, water transport, sugar metabolism, proline, and reactive oxygen scavenging mechanisms. Five selected DEGs (K+ transporter, aquaporin, glutathione S-transferase, cyclic nucleotide-gated channel, and superoxide dismutase) were validated by qPCR. Our results indicated that C. pyramidale had an early perception of salt stress modulating ionic channels and transporters, and as the stress progressed, the focus turned to the antioxidant system, aquaporins, and complex hormone responses. The results of this first root transcriptome provide clues on how this native species modulate gene expression to achieve salt stress tolerance.

Salt tolerance of Calotropis procera begins with immediate regulation of aquaporin activity in the root system.

The ability to respond quickly to salt stress can determine the tolerance level of a species. Here, we test how rapidly the roots of Calotropis procera react to high salinity conditions. In the first 24 h after saline exposure, the plants reduced stomatal conductance, increased CO2 assimilation, and water use efficiency. Thus, the root tissue showed an immediate increase in soluble sugars, free amino acid, and soluble protein contents. Twelve aquaporins showed differential gene expression in the roots of C. procera under salinity. Transcriptional upregulation was observed only after 2 h, with greater induction of CpTIP1.4 (fourfold). Transcriptional downregulation, in turn, occurred mainly after 8 h, with the largest associated with CpPIP1.2 (fourfold). C. procera plants responded quickly to high saline levels. Our results showed a strong stomatal control associated with high free amino acid and soluble sugar contents, regulated aquaporin expression in roots, and supported the high performance of the root system of C. procera under salinity. Moreover, this species was able to maintain a lower Na+/K+ ratio in the leaves compared to that of the roots of stressed plants. The first response of the root system, after immediate contact with saline solution, present an interesting scenario to discuss. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12298-021-00957-9.

Root adaptations to soils with low fertility and aluminium toxicity.

Background Plants depend on their root systems to acquire the water and nutrients necessary for their survival in nature, and for their yield and nutritional quality in agriculture. Root systems are complex and a variety of root phenes have been identified as contributors to adaptation to soils with low fertility and aluminium (Al) toxicity. Phenotypic characterization of root adaptations to infertile soils is enabling plant breeders to develop improved cultivars that not only yield more, but also contribute to yield stability and nutritional security in the face of climate variability. Scope In this review the adaptive responses of root systems to soils with low fertility and Al toxicity are described. After a brief introduction, the purpose and focus of the review are outlined. This is followed by a description of the adaptive responses of roots to low supply of mineral nutrients [with an emphasis on low availability of nitrogen (N) and phosphorus (P) and on toxic levels of Al]. We describe progress in developing germplasm adapted to soils with low fertility or Al toxicity using selected examples from ongoing breeding programmes on food (maize, common bean) and forage/feed (Brachiaria spp.) crops. A number of root architectural, morphological, anatomical and metabolic phenes contribute to the superior performance and yield on soils with low fertility and Al toxicity. Major advances have been made in identifying root phenes in improving adaptation to low N (maize), low P (common bean) or high Al [maize, common bean, species and hybrids of brachiariagrass, bulbous canarygrass (Phalaris aquatica) and lucerne (Medicago sativa)]. Conclusions Advanced root phenotyping tools will allow dissection of root responses into specific root phenes that will aid both conventional and molecular breeders to develop superior cultivars. These new cultivars will play a key role in sustainable intensification of crop-livestock systems, particularly in smallholder systems of the tropics. Development of these new cultivars adapted to soils with low fertility and Al toxicity is needed to improve global food and nutritional security and environmental sustainability.

Postponed Application of Phosphorus and Potassium Fertilizers Mitigates the Damage of Late Spring Coldness by Improving Winter Wheat Root Physiology.

Late spring coldness (LSC) is the main limiting factor threatening wheat yield and quality stability. Optimal nutrient management is beneficial in mitigating the harms of LSC by improving wheat root physiology. This study proposed a nutrient management strategy that postponed the application of phosphorus (P) and potassium (K), effectively strengthening wheat's defense against LSC. This experiment used the winter cultivar "Yannong19" (YN 19) as plant material for two consecutive years (2021-2022 and 2022-2023). Two fertilizer treatments were used: traditional P and K fertilizers application (R1: base fertilizer: jointing fertilizer = 10:0) and postponed P and K fertilizers application (R2: base fertilizer: jointing fertilizer = 5:5); wheat plants at the anther connective formation stage shifted to temperature-controlled phytotrons for normal (T0, 11 °C/4 h) and low temperatures (T1, 4 °C/4 h; T2, -4 °C/4 h) as treatments of LSC. The results showed that under low temperature (LT) treatment, compared with R1, the R2 treatment increased the concentrations of osmotic adjustment substances (soluble sugars and soluble protein contents by 6.2-8.7% and 3.0-8.9%), enhanced activities of antioxidant enzymes (superoxide dismutase, peroxidase and catalase activities by 2.2-9.1%, 6.2-9.7% and 4.2-8.4%), balanced the hormone concentrations (increased IAA and GA3 contents by 2.8-17.5% and 10.4-14.1% and decreased ABA contents by 7.2-14.3%), and reduced the toxicity (malondialdehyde, hydrogen peroxide content and O2·- production rate by 5.7-12.4%, 17.7-22.8% and 19.1-19.1%) of the cellular membranes. Furthermore, the wheat root physiology in R2 significantly improved as the root surface area and dry weight increased by 5.0-6.6% and 4.7-6.6%, and P and K accumulation increased by 7.4-11.3% and 12.2-15.4% compared to R1, respectively. Overall, the postponed application of P and K fertilizers enhanced the physiological function of the root system, maintained root morphology, and promoted the accumulation of wheat nutrients under the stress of LSC.

Coordination of root growth with root morphology, physiology and defense functions in response to root pruning in Platycladus orientalis.

Introduction: Root pruning is commonly used to facilitate seedling transplantation for the restoration of degraded or damaged ecosystems. However, little is known about how root growth coordinates morphology, physiology and defense functions following root pruning. Objectives: We aim to elucidate whether and how root growth trades off with defense functioning after pruning. Methods: Seedlings of Platycladus orientalis, a tree species widely used in forest restoration, were subjected to root pruning treatment. A suite of root growth, morphological and physiological traits were measured after pruning in combination with proteomic analysis. Results: Root growth was insensitive to pruning until at 504 h with a significant increase of 16.8%, whereas root physiology was activated rapidly after pruning. Key root morphological traits, such as root diameter, specific root length and root tissue density, showed no response to the pruning treatment. Plant defense syndromes such as reactive oxygen species-scavenging enzymes and defensive phytohormones such as jasmonic acid and abscisic acid, were recruited at six hours after pruning and recovered to the unpruned levels at 504 h. Compared with the controls, 271, 360 and 106 proteins were differentially expressed at 6, 72 and 504 h after root pruning, respectively. These proteins, associated with defense function, showed temporal patterns similar to the above defense syndromes. Conclusion: Our results suggest a root growth-defense tradeoff following root pruning in P. orientalis. This tradeoff was potentially due to the significant increase of indole-3-acetic acid, the phytohormone stimulating root branching, which occurred soon after pruning. Together, these results provide a holistic understanding of how root growth is coordinated with root morphology, physiology, and defense in response to root pruning.

[Responses of root physiological characteristics of different drought-tolerant cotton varieties to drought]. / ä¸¤ä¸ªä¸åŒè€æ—±æ€§æ£‰èŠ±å“ç§æ ¹ç³»ç”Ÿç†ç‰¹æ€§å¯¹å¹²æ—±çš„å“åº”.

In order to explore the physiological responses of root system of different drought-resistant cotton varieties to drought and their relationships with biomass, we examined the effects of drought stress on root vigor, antioxidant enzyme activities and anatomic structure (duct diameter, number) and biomass of different drought-tolerant varieties, including the drought-inolerant variety 'Xinluzao 17' (L17) and the drought-tolerant variety 'Xinluzao 22' (L22). Both varieties were grown under soil column cultivation conditions, with conventional irrigation (CK), mild drought (W1) and moderate drought (W2) treatments. The results showed that drought stress caused significant reductions in soluble protein (SP) content, root vigor (RV), the number of cork layers, the number of rhizome ducts, the diameter of the ducts in both varieties. The higher root MDA content, CAT, POD and SOD activities in response to drought led to reduction of aboveground dry mass. Compared with that of L17, SP content, 0-40 cm and 80-120 cm soil layer RV, the number of cork layers, the number of rhizome ducts, the diameter of ducts, and the aboveground dry mass of L22 all signi-ficantly increased. Under the W2 treatment, the RV decrease of L22 was 26.2% lower than that of L17, and CAT, POD, SOD activities and the thickness of cortex were 43.6%, 6.9%, 25.4%, 19.9% higher than that of L17. There were positive correlations between dry mass and RV, SOD, POD, the number of cork layers, the diameter and number of rhizome ducts. Therefore, cotton variety with strong drought tolerance could maintain higher root activity, cork layer number, the diameter of rhizome ducts, and number under drought conditions, and thus promote the accumulation of aboveground biomass, which was the physiological mechanism for their stronger drought tolerance.

The Physiological Implications of S-Nitrosoglutathione Reductase (GSNOR) Activity Mediating NO Signalling in Plant Root Structures.

Nitrogen remains an important macronutrient in plant root growth due to its application in amino acid production, in addition to its more elusive role in cellular signalling through nitric oxide (NO). NO is widely accepted as an important signalling oxidative radical across all organisms, leading to its study in a wide range of biological pathways. Along with its more stable NO donor, S-nitrosoglutathione (GSNO), formed by NO non-enzymatically in the presence of glutathione (GSH), NO is a redox-active molecule capable of mediating target protein cysteine thiols through the post translational modification, S-nitrosation. S-nitrosoglutathione reductase (GSNOR) thereby acts as a mediator to pathways regulated by NO due to its activity in the irreversible reduction of GSNO to oxidized glutathione (GSSG) and ammonia. GSNOR is thought to be pleiotropic and often acts by mediating the cellular environment in response to stress conditions. Under optimal conditions its activity leads to growth by transcriptional upregulation of the nitrate transporter, NRT2.1, and through its interaction with phytohormones like auxin and strigolactones associated with root development. However, in response to highly nitrosative and oxidative conditions its activity is often downregulated, possibly through an S-nitrosation site on GSNOR at cys271, Though GSNOR knockout mutated plants often display a stunted growth phenotype in all structures, they also tend to exhibit a pre-induced protective effect against oxidative stressors, as well as an improved immune response associated with NO accumulation in roots.

Shoot/Root Interactions Affect Soybean Photosynthetic Traits and Yield Formation: A Case Study of Grafting With Record-Yield Cultivars.

Improvement of soybean [Glycine max (L.) Merr.] yield and photosynthesis physiology have been achieved over decades of cultivar breeding. Identification of the mechanisms involved in shoot-root interactions would be beneficial for the development of yield improvement breeding strategies. The objectives of this study were to investigate soybean shoot-root interactions with different-year released soybean cultivars and to evaluate their effects on grain yield and yield components. Soybean grafts used in this study were constructed with two record-yield cultivars Liaodou14 (L14) and Zhonghuang35 (Z35) and eleven cultivars released in 1966-2006 from the United States and Chinese. The grafting experiments were conducted as pot-culture experiments and repeated in 2014 and 2015. Our results showed that net photosynthesis rate (P N) was positively correlated to both root activity and root bleeding sap mass (RBSM) during the R6 reproductive stage. Moreover, different year-released soybean shoots had all exhibited capabilities of changing the root activity and architecture of L14 and Z35 rootstocks to "generation"-specific patterns during all reproductive stages. However, these influences were independent of the photosynthetic strength. Yield analysis had demonstrated that high-yielding root systems (L14 and Z35 rootstocks) could cause more than 15% of yield increase in seven out of eleven common scions in a scion-genotype-dependent manner. For Williams-descendant cultivar scions, L14 and Z35 rootstocks promoted yields mainly by increasing the seed number (SN), but those scions of Amsoy-descendent cultivars showed mainly seed weight (SW) increases when grafted onto L14 and Z35 rootstocks. On the other hand, although most tested common rootstocks did not show significant influence over the final yields in record-yield L14 and Z35 scions, they were obviously capable of shifting the formation of yield components when compared to L14 and Z35 self-grafting controls. Taken together, soybean shoots could influence the root physiology and played a crucial role in the determination of yield potentials. Synergistically with shoots, soybean roots played a more supportive role during the realization of yield potentials through root activities and by balancing the formation of yield components. These findings provided interesting insightful information for developing new breeding strategies which aim to pyramid elite physiological and yield traits by selecting specific parental combinations.

[Effects of straw returning amount and type on soil nitrogen and its composition]. / æ²¹èœç§¸ç§†è¿˜ç”°å¯¹æ°´ç¨»æ ¹ç³»ã€åˆ†è˜–å’Œäº§é‡çš„å½±å“.

By field experiment and cultivation simulating, we analyzed the impacts of oilseed rape straw incorporation on root, tiller and grain yield of rice. Results showed that straw incorporation treatments decreased 1-2 in tillers and 1.0-8.6 mg per plant in bleeding sap. The activities of glutamine synthetase (GS), glutamic-pyruvic transaminase (GPT) and glutamic-oxalacetic transa-minase (GOT) of root in straw incorporation treatments were reduced by 0.10-6.11, 0.06-0.31 and 0.52-0.84 µmol·g-1·h-1 respectively as compared to control, during the earlier stage (0-36 d after transplanting) of rice growth. Compared to no straw incorporation treatment, the straw incorporation by plough method increased bleeding sap by 3.4-11.7 mg per plant, and increased the activities of GS, GPT and GOT by 0.34-0.78, 0.13-0.45 and 0.18-0.20 µmol·g-1·h-1 respectively. During the later stage (56 d after transplanting) of rice growth, straw incorporation treatments by mulching reduced bleeding sap by 19-25 mg per plant, and increased the activities of GS, GPT and GOT in root by 0.16-0.34, 0.08-0.21 and 0.06-0.32 µmol·g-1·h-1, respectively. The grain yield of total straw returning treatments (MF2 and FH2) were higher than other straw returning treatments. In comparison of MF2, the rice yield of FH2 was higher by 0.13-0.48 t·hm-2. Oil seed rape straw incorporation hindered rice root growth and delayed the reviving of rice after transplanting, by decreasing the activities of roots and nitrogen metabolizing enzymes during earlier stage. However, it promoted rice root growth by increasing activities of roots and nitrogen metabolizing enzyme during media and later stage. The increase or decrease of rice yield is a comprehensive balance of multiple factors in straw incorporation rice field. Total straw incorporation by plough method is one of the better straw returning manners for oilseed rape-rice rotation system in Sichuan Basin area.

Increased planting density of Chinese milk vetch (Astragalus sinicus) weakens phosphorus uptake advantage by rapeseed (Brassica napus) in a mixed cropping system.

Neighbouring plants can affect plant growth through altering root morphological and physiological traits, but how exactly root systems respond to neighbouring plants with varied density, determining nutrient uptake and shoot growth is poorly understood. In a pot-based experiment, rapeseed was grown alone (single rapeseed), or mixed with 3, 6, or 15 Chinese milk vetch plants. As controls, monocropped Chinese milk vetch was grown at the same planting density, 3, 6, or 15 plants per pot. Root interaction between rapeseed and Chinese milk vetch facilitated phosphorus (P) uptake in rapeseed grown with 3 plants of Chinese milk vetch. As the planting density of Chinese milk vetch in mixture increased, there was a decrease in citrate concentration and acid phosphatase activity but an increase in the total root length of Chinese milk vetch per pot, resulting in decreases in rapeseed root biomass, total root length and P uptake when rapeseed was grown with 6 or 15 Chinese milk vetch plants relative to rapeseed grown with 3 plants. These results demonstrate that the enhanced nutrient utilization induced by root interaction at low planting densities was eliminated by the increased planting density of the legume species in rapeseed/Chinese milk vetch mixed cropping system, suggesting that root/rhizosphere management through optimizing legume planting density is important for improving crop productivity and nutrient-use efficiency.

Polyphenolic profiling of roots (Vitis spp.) under grape phylloxera (D. vitifoliae Fitch) attack.

Many plants respond to herbivore attacks by the formation of secondary metabolites, such as polyphenols. Grape phylloxera (Daktulosphaira vitifoliaeFitch) induces organoid root galls on fibrous root tips of tolerant Vitis spp. rootstocks. We aim to understand if and how secondary metabolites are involved in the compatible interaction of D. vitifoliae and tolerant Vitis ssp. rootstocks belowground. We hypothise that D. vitifoliae infestation triggers the accumulation of phenolic key compounds in root gall tissue without preventing the compatible host-parasite interaction on two tolerant rootstocks with different genetic background: Teleki 5C (V. berlandieri x V. riparia) and Fercal (B.C. n°1B x 31 Richter). Plants and insects are grown in isolated climate chambers to sample root tips of non-infested plants (control) as well as root tips and galls of D. vitifoliae infested plants (5-14 dai). HPLC-MS-based analyses of phenolic key compounds are compared with gene expression levels of the biosynthetic phenylpropanoid pathway analysing temporal sequences of D. vitifoliae infested root tissue. The results show that the induction of the phenylpropanoid pathway by D. vitifoliae infestation plays an important role in the plant response. Concentrations of phenolic key compounds vary significantly among the rootstocks tested. Both rootstocks display an accumulation of flavan-3-ols and stilbenes in infested root gall tissue. Comparing the host responses of the two rootstocks Fercal shows a stronger accumulation of stilbenes locally in infested root galls, whereas Teleki 5C indicates elevated amounts of stilbenes in non-infested root tip tissue.

Impact of drought stress induced by polyethylene glycol on growth, water relations and cell viability of Norway spruce seedlings.

We investigated physiological responses of 7-week-old Norway spruce seedlings to water deficits of different intensities. Hydroponically grown seedlings were subjected to mild (-0.15 MPa), strong (-0.5 and -1.0 MPa) and extreme (-1.5 MPa) water deficit induced by polyethylene glycol 6000, and their growth parameters, water status and physiological activity were analyzed. Seedlings effectively restricted water loss under drought, and even under extreme water deficit, shoot relative water content did not fall below 85%. Water stress induced substantial decreases in the osmotic potentials of root and needle cell sap, up to 0.3-0.4 MPa under extreme water deficit, though this did not result from water loss or accumulation of K+ and Na+ ions. Seedling growth was very susceptible to water stress because of poor capacity for cell wall adjustment. Water stress injured seedling roots, as evidenced by the loss of root cell physiological activity estimated by the ability to hydrolyse fluorescein diacetate and by increased root calcium content up to 8-10-fold under extreme water stress. At the same time, root hair growth was enhanced, especially under mild water deficit, which increased the root water-absorbing capacity. In summary, seedlings of Norway spruce were characterized by high susceptibility to water stress and concurrently by pronounced ability to maintain water status. These characteristics are fully consistent with spruce confinement to moist habitats.

Measuring Spatial and Temporal Oxygen Flux Near Plant Tissues Using a Self-Referencing Optrode.

Self-referencing optrodic microsensing is a noninvasive method for measuring oxygen transport into/from tissues. The sensing mechanism is based on fluorescence quenching by molecular oxygen at the tip of a fiber-optic probe, and facilitates microscale spatial mapping and continuous monitoring at 100-350 mHz sampling frequency. Over the last decade, this technique has been applied for plant tissues, including roots, seeds, leaves, and flowers in both liquid and air. Here, we describe the operating principle of self-referencing optrodic microsensing for the study of plant tissues with a specific focus on juvenile roots.

Effects of salt stress on eco-physiological characteristics in Robinia pseudoacacia based on salt-soil rhizosphere.

Robinia pseudoacacia is the main arbor species in the coastal saline-alkali area of the Yellow River Delta. Because most studies focus on the aboveground parts, detailed information regarding root functioning under salinity is scare. Root traits of seedlings of R. pseudoacacia including morphological, physiological and growth properties under four salinity levels (CK, 1‰, 3‰ and 5‰ NaCl) were studied by the pot experiments to better understand their functions and relationships with the shoots. The results showed that seedling biomass decreased by the reduction of root, stem and leaf biomass with the increase of salinity levels. With increasing salinity levels, total root length (TRL) and total root surface area (TRSA) decreased, whereas specific root length (SRL) and specific root area (SRA) increased. Salt stress decreased root activity (RA) and the maximum net photosynthetic rate (Amax) and increased the water saturation deficit (WSD) significantly in the body. Correlation analyses showed significantly correlations between root morphological and physiological parameters and seedling biomass and shoot physiological indexes. R. pseudoacacia seedlings could adapt to 1‰ salinity by regulating the root morphology and physiology, but failed in 5‰ salinity. How to adjust the water status in the body with decreasing water uptake by roots was an important way for R. pseudoacacia seedlings to adapt to the salt stress.

Nitrogen uptake over entire root systems of tree seedlings.

Uptake of nitrogen (N) by sequential root regions in six tree species was measured in roots of 16- to 26-month-old seedlings at 50 and 1500 µM NH4NO3 concentration, at the cell level using oscillating microelectrodes and at the root region level using enriched (15)N application. Our objective was to determine the root regions making the greatest contribution to total N uptake in each species as measured by the two contrasting techniques. White and condensed tannin zones were the regions with the smallest surface area in all species, but these zones often had the highest net flux of NH4(+) and NO3(-). For most species, little variation was found among root regions in N flux calculated using a (15)N mass balance approach, but where significant differences existed, high N flux was observed in white, cork or woody zones. When N fluxes measured by each of the two methods were multiplied by the estimated surface area or biomass of each root region, the effect of root region size had the greatest influence on regional N uptake. Root regions of greatest overall N uptake were the cork and woody zones, on average. Total N uptake may thus be greatest in older regions of tree seedling roots, despite low rates of uptake per unit area.