Ecophysiological and genomic approaches to cyanobacterial hardening for restoration.

Cyanobacteria inhabit extreme environments, including drylands, providing multiple benefits to the ecosystem. Soil degradation in warm drylands is increasing due to land use intensification. Restoration methods adapted to the extreme stress in drylands are being developed, such as cyanobacteria inoculation to recover biocrusts. For this type of restoration method to be a success, it is crucial to optimize the survival of inoculated cyanobacteria in the field. One strategy is to harden them to be acclimated to stressful conditions after laboratory culturing. Here, we analyzed the genome and ecophysiological response to osmotic desiccation and UVR stresses of an Antarctic cyanobacterium, Stenomitos frigidus ULC029, which is closely related to other cyanobacteria from warm and cold dryland soils. Chlorophyll a concentrations showed that preculturing ULC029 under moderate osmotic stress improved its survival during an assay of desiccation plus rehydration under UVR. Additionally, its sequential exposure to these stress factors increased the production of exopolysaccharides, carotenoids, and scytonemin. Desiccation, but not osmotic stress, increased the concentrations of the osmoprotectants trehalose and sucrose. However, osmotic stress might induce the production of other osmoprotectants, for which the complete pathways were observed in the ULC029 genome. In total, 140 genes known to be involved in stress resistance were annotated. Here, we confirm that the sequential application of moderate osmotic stress and dehydration could improve cyanobacterial hardening for soil restoration by inducing several resistance mechanisms. We provide a high-quality genome of ULC029 and a description of the main resistance mechanisms (i.e., production of exopolysaccharides, osmoprotectants, chlorophyll, and carotenoids; DNA repair; and oxidative stress protection).

Enhancement of root abscisic acid mediated osmotic regulation by macroalgal compounds promotes adaptability of rice (Oryza sativa L.) in response to progressive metal ion mediated environmental stress.

Soil deterioration is a major cause of poor agricultural productivity, necessitating sufficient nutrient inputs like fertilizers and amendments for sustainable use. As one such strategy, the current study evaluates the potential of Sargassum wightii, a brown seaweed extract, as an osmopriming agent to improve seed germination, early establishment, and competent seedling performances in acidic soil. The elemental makeup of seaweed extract (BS) showed that it included major plant macro (Potassium, Nitrogen and Phosphorous), as well as micronutrients (Magnesium and Iron) and trace elements (Zinc, Copper, and Molybdenum). While seed germination was impacted by H+ ion toxicity, seeds primed with BS emerged earlier and showed a higher germination percentage (98.2%) and energy (92.4%). BS treatments enhanced seedling growth by 63% and had a positive effect on root growth (68.2%) as well as increases in root surface area (10%) and volume (67.01%). Stressed seedlings had 76.39% and 63.2% less carotenoid and chlorophyll, respectively. In seedlings treated with BS, an increase in protein and Total Soluble Sugars content of 14.56 and 7.19%, respectively, was seen. Fourier Transform-Infra Red analysis of postharvest soil indicated improved soil health with absorbance corresponding to enhanced soil water holding capacity and organic matter. Increased abscisic acid synthesis rate and associated antioxidant enzyme system (Malondialdehyde, Glutathione peroxidases and ascorbate peroxidase) activation, along with enhanced H+ adenosine triphosphate-ase and glutathione activities, help ameliorate and deport H+ ions from cells, scavenge Reactive Oxygen Species, thus protecting cells from injury. Seaweed extract successfully reduced H+-induced ion toxicities in rice by promoting their germination, physiological, metabolically, and growth parameters that could ultimately increase their productivity and yield in a sustainable and environmentally friendly manner.

Plant biodiversity and the regeneration of soil fertility.

Fertile soils have been an essential resource for humanity for 10,000 y, but the ecological mechanisms involved in the creation and restoration of fertile soils, and especially the role of plant diversity, are poorly understood. Here we use results of a long-term, unfertilized plant biodiversity experiment to determine whether biodiversity, especially plant functional biodiversity, impacted the regeneration of fertility on a degraded sandy soil. After 23 y, plots containing 16 perennial grassland plant species had, relative to monocultures of these same species, ∼30 to 90% greater increases in soil nitrogen, potassium, calcium, magnesium, cation exchange capacity, and carbon and had ∼150 to 370% greater amounts of N, K, Ca, and Mg in plant biomass. Our results suggest that biodiversity, likely in combination with the increased plant productivity caused by higher biodiversity, led to greater soil fertility. Moreover, plots with high plant functional diversity, those containing grasses, legumes, and forbs, accumulated significantly greater N, K, Ca, and Mg in the total nutrient pool (plant biomass and soil) than did plots containing just one of these three functional groups. Plant species in these functional groups had trade-offs between their tissue N content, tissue K content, and root mass, suggesting why species from all three functional groups were essential for regenerating soil fertility. Our findings suggest that efforts to regenerate soil C stores and soil fertility may be aided by creative uses of plant diversity.

Compost incorporation and wildflowers introduction for stormwater infiltration and erosion-control vegetation cover establishment in post-construction landscapes.

Urban and suburban development frequently disturbs and compacts soils, reducing infiltration rates and fertility, posing challenges for post-development vegetation establishment, and contributing to soil erosion. This study investigated the effectiveness of compost incorporation in enhancing stormwater infiltration and vegetation establishment in urban landscapes. Experimental treatments comprised a split-split plot design of vegetation mix (grass, wildflowers, and grass-wildflowers) as main plot, ground cover (hydro-mulch and excelsior) as subplot, and compost (30% Compost and No-Compost) as sub-subplot factors. Wildflower inclusion was motivated by their recognized ecological benefits, including aesthetics, pollinator habitat, and deep root systems. Vegetation cover was assessed using RGB (Red-Green-Blue) imagery and ArcGIS-based supervised image classification. Over a 24-month period, bulk density, infiltration rate, soil penetration resistance, vegetation cover, and root mass density were assessed. Results highlighted that Compost treatments consistently reduced bulk density by 19-24%, lowered soil penetration resistance to under 2 MPa at both field-capacity and water-stressed conditions, and increased infiltration rate by 2-3 times compared to No-Compost treatments. Vegetation cover assessment revealed rapid establishment with 30% compost and 60:40 grass-wildflower mix, persisting for an initial 12 months. Subsequently, all treatments exhibited similar vegetation coverage from 13 to 24 months, reaching 95-100% cover. Compost treatments had significantly higher root mass density within the top 15 cm than No-Compost, but compost addition did not alter the root profile beyond the 15 cm depth incorporation depth. The findings suggest that incorporating 30% compost and including a wildflower or grass-wildflower mix appears to be effective in enhancing stormwater infiltration and provides rapid erosion control vegetation cover establishment in post-construction landscapes.

The effect of land use and land cover on soil carbon storage in the Yellow River Delta, China: Implications for wetland restoration and adaptive management.

Gaining a comprehensive understanding of the effect of land use/land cover (LULC) and soil depth on soil carbon storage, through the manipulation of external carbon input and turnover processes, is crucial for accurate predictions of regional soil carbon storage. Numerous research investigations have been conducted to examine the impact of LULC on the storage and cycling of carbon in the surface soils of coastal wetlands. Nevertheless, there remains a dearth of understanding concerning the implications of this phenomenon on subterranean soils, a crucial factor in discerning the capacity for carbon sequestration in coastal wetlands and implementing measures for their preservation. The study focused on the Yellow River Delta (YRD) in China, which serves as a representative model system. It aimed to assess the impact of LULC as well as soil depth on carbon storage. This was achieved by a combination of remote sensing interpretation and field samplings. The findings of the study indicate that there was an increase in soil organic carbon storage with both the area covered and the depth of the soil across the four different land use types, namely forest, grass, tidal flat, and cultivated land. Cultivated land was identified as the predominant LULC type, encompassing 41.73% of the entire YRD. Furthermore, it accounted for a substantial carbon storage of 76.08%. In comparison to soil layers at depths of 0-20 cm and 20-40 cm, 40-60 cm was discovered to have the maximum carbon storage, accounting for 42.29% of total carbon storage. Furthermore, one of the main factors influencing carbon storage is salinity, which shows a negative association with carbon storage. Moreover, the aforementioned findings underscore the significance of the conjoined physical and chemical properties induced by LULC in influencing the dynamics of soil carbon. This suggests that the inclusion of deep soil carbon in the estimation and restoration of soil carbon storage is necessary. This inclusion will support the realization of the United Nations' "Toward Zero Carbon" effort and facilitate the implementation of China's national carbon neutrality objectives.

Organic amendments from recycled waste promote short-term carbon sequestration of restored soils in drylands.

Soils are considered as a major reservoir for terrestrial carbon and it can act as a source or sink depending upon the land management activities. In semi-arid areas, the natural recovery of soils degraded by mining activities is complicated. A possible solution to recover soil quality and functionality, plant cover and carbon sequestration capacity could be the application of organic amendments. This work focuses on a restoration carried out in 2018 by applying with different composted organic amendments (stabilized sludge, gardening and greenhouse waste) in a limestone quarry under semi-arid climate (SE Spain). The objective was to evaluate the effects of different organic amendments on net CO2 exchange in two microcosms: soil-Stipa tenacissima and soil-spontaneous vegetation. Soil physical and chemical properties, environmental and ecological variables and their interrelationship were studied in amended and unamended soils. The results obtained under soil-forming factors in the study area showed an increase in soil organic carbon and nitrogen content, improved moisture and plant growth, and plant canopy development in amended soils. Soil moisture, soil temperature and plant cover significantly influenced net CO2 exchange. In general, microcosms with S. tenacissima showed higher carbon sequestration rates than soils with only spontaneous plant cover. Soils treated with a vegetable-only amendments showed higher plant cover and CO2 fixation rates after significant rainfall. On the other hand, the plots treated with sludge compost presented more soil respiration than photosynthesis, especially in the wet seasons. Soils with sludge and greenhouse compost mixed had higher CO2 fixation rates than soils restored with a mixture of sludge and garden compost. Soils with greenhouse waste compost showed CO2 fixation in the microcosm with plants in all campaigns, being the best treatment to promote atmospheric CO2 sequestration in soil restoration.

Beneficial Cyanosphere Heterotrophs Accelerate Establishment of Cyanobacterial Biocrust.

Biological soil crusts (biocrusts) are communities of microbes that inhabit the surface of arid soils and provide essential services to dryland ecosystems. While resistant to extreme environmental conditions, biocrusts are susceptible to anthropogenic disturbances that can deprive ecosystems of these valuable services for decades. Until recently, culture-based efforts to produce inoculum for cyanobacterial biocrust restoration in the southwestern United States focused on producing and inoculating the most abundant primary producers and biocrust pioneers, Microcoleus vaginatus and members of the family Coleofasciculaceae (also called Microcoleus steenstrupii complex). The discovery that a unique microbial community characterized by diazotrophs, known as the cyanosphere, is intimately associated with M. vaginatus suggests a symbiotic division of labor in which nutrients are traded between phototrophs and heterotrophs. To probe the potential use of such cyanosphere members in the restoration of biocrusts, we performed coinoculations of soil substrates with cyanosphere constituents. This resulted in cyanobacterial growth that was more rapid than that seen for inoculations with the cyanobacterium alone. Additionally, we found that the mere addition of beneficial heterotrophs enhanced the formation of a cohesive biocrust without the need for additional phototrophic biomass within native soils that contain trace amounts of biocrust cyanobacteria. Our findings support the hitherto-unknown role of beneficial heterotrophic bacteria in the establishment and growth of biocrusts and allow us to make recommendations concerning biocrust restoration efforts based on the presence of remnant biocrust communities in disturbed areas. Future biocrust restoration efforts should consider cyanobacteria and their beneficial heterotrophic community as inoculants. IMPORTANCE The advancement of biocrust restoration methods for cyanobacterial biocrusts has been largely achieved through trial and error. Successes and failures could not always be traced back to particular factors. The investigation and application of foundational microbial interactions existing within biocrust communities constitute a crucial step toward informed and repeatable biocrust restoration methods.

Domestic wastewater infiltration process in desert sandy soil and its irrigation prospect analysis.

Although domestic wastewater and its reclaimed water are alternative water resources in arid region, investigation of their negative effect must be done to prevent environmental pollution. In this paper, a short-term column experiment was conducted to simulate the infiltration process of wastewater in desert soil. Alfalfa was planted and irrigated with fresh water for control (CK), tertiary treated domestic wastewater (TTW), secondary treated domestic wastewater (STW) and raw domestic wastewater untreated (RW). The effect of wastewater application on desert soil, drainage and plant properties was evaluated. Experimental results demonstrated that the tested desert soil has no soil structure, organic matter, nor microbial community while possess high infiltration rate. The use of wastewater significantly improved plant growth, and the biomass of TTW, RW, STW were 5.5, 4.3, 2.9 times of CK. The infiltration rate of water in bare soil was high (high to low: TTW, CK, RW, STW), while plant growth reduced infiltration rate (ca. 40% with TTW and RW). Wastewater irrigation and plant growth decreased soil zeta potential, while increased formation of aggregates and bacterial abundance and diversity in soil. Top soil (0-30 cm) accumulation of nitrogen (N), phosphorus (P), organic matter and E. coli was evidenced and all could go down to deep soil and drainage with constant wastewater use. It was concluded that domestic wastewater had big potential in desert soil vegetation recovering and function restoration. Nevertheless, the N, salt, P and organic matter and E. coli in wastewater could give rise to desert soil and groundwater contamination if improper treatment was used.

Aplication of Soil Productivity Index after Eight Years of Soil Reclamation with Sewage Sludge Amendments.

Remediation methods are gaining acceptance as effective and inexpensive techniques used in the reclamation of degraded areas. The reclamation of post-mining sites has become important for the conservation of soil and vegetation. An assessment of potential productivity of plants based on the depth of their root zone is crucial for the validation of properties of post-mining soils. Our aim was to present soil productivity parameters that would facilitate assessment of various post-mining objects. Soil productivity index (SPI) was calculated to assess soil quality, mainly in areas degraded by hard coal mining. It is based on an equation determining the relationship between the productivity index and the physical, chemical, and hydrological properties of soil. Our study demonstrated the positive effects of enriched sewage sludge with amendments on newly formed soil and plants. The soil productivity index was 0.81, demonstrating the suitable condition of the initial soil resulting from reclamation. This parameter might be important for post-industrial reclamation, such as wasteland intended to be transformed into woodland. Considering the composition of sewage sludge amendments, it can be successfully used as an effective method of restoring and improving both the physical and chemical properties of soils, thus effectively replacing mineral fertilisers. The use of sewage sludge in soil reclamation will be an important method of managing this waste material in post-mining areas.

A Fog-Irrigated Soil Substrate System Unifies and Optimizes Cyanobacterial Biocrust Inoculum Production.

Biological soil crusts (biocrusts) are globally important microbial communities inhabiting the top layer of soils. They provide multiple services to dryland ecosystems but are particularly vulnerable to anthropogenic disturbance from which they naturally recover only slowly. Assisted inoculation with cyanobacteria is held as a promising approach to promote biocrust regeneration. Two different methodologies have been developed for this purpose: mass cultivation of biocrust pioneer species (such as the cyanobacteria Microcoleus spp.) on cellulose supports, and polymicrobial cultivation of biocrusts in soils within greenhouse settings. Here, we aimed to test a novel method to grow cyanobacterial biocrust inoculum based on fog irrigation of soil substrates (FISS) that can be used with either culture-based or mixed-community approaches. We found that the FISS system presents clear advantages over previous inoculum production methodologies; overall, FISS eliminates the need for specialized facilities and decreases user effort. Specifically, there were increased microbial yields and simplification of design compared to those of the culture-based and mixed-community approaches, respectively. Its testing also allows us to make recommendations on underexplored aspects of biocrust restoration: (i) field inoculation levels should be equal to or greater than the biomass found in the substrate and (ii) practices regarding evaluation of cyanobacterial biomass should, under certain circumstances, include proxies additional to chlorophyll aIMPORTANCE Biocrust inoculum production for use in dryland rehabilitation is a powerful tool in combating the degradation of dryland ecosystems. However, the facilities and effort required to produce high-quality inoculum are often a barrier to effective large-scale implementation by land managers. By unifying and optimizing the two foremost methods for cyanobacterial biocrust inoculum production, our work improves on the ease and cost with which biocrust restoration technology can be translated to practical widespread implementation.

Threats to soil and water resources in South Africa.

South Africa has always been subject to an arid climate, receiving only slightly more than half of the world's average precipitation. This precarious situation is further exacerbated by very high potential evapotranspiration and an extremely rapid population growth. This paper aims to evaluate the threats to the soil and water resources of South Africa. These resources are vital in ensuring sustainable food production. Physically, wind and water erosion, structural decay, subsoil compaction and soil surface crusting are of great concern. Chemically, acidification, salinization, and pollution are the main concerns; with acidification mainly limited to the humid eastern parts and salinization to the arid western parts of South Africa. Biological degradation is mainly driven by organic matter decline, reducing the already low soil organic carbon content of South African soils. The extent of organism decline and the concomitant pathogen increase is not that well-known. Water resources in South Africa are very limited and of variable certainty. Water use efficiency, especially in agriculture and forestry, should receive urgent attention, since these are the main consumers of this valuable resource. Sedimentation, salinization, and pollution constitute the main impacts on water quality. Water pollution arises mainly from point sources such as municipal effluent, with smaller impacts from industry and feedlots. Given the varied nature of institutions and role-players involved in soil and water degradation, it is vital that one or more national institutions take responsibility to monitor and at least attempt to rectify and/or manage the degradation of South Africa's soil and water resources. In this regard substantial financial support from the private sector would also be imperative.

Soil degradation and recovery - Changes in organic matter fractions and structural stability.

The combination of concurrent soil degradation and restoration scenarios in a long-term experiment with contrasting treatments under steady-state conditions, similar soil texture and climate make the Highfield land-use change experiment at Rothamsted Research unique. We used soil from this experiment to quantify rates of change in organic matter (OM) fractions and soil structural stability (SSS) six years after the management changed. Soil degradation included the conversion of grassland to arable and bare fallow management, while soil restoration comprised introduction of grassland in arable and bare fallow soil. Soils were tested for clay dispersibility measured on two macro-aggregate sizes (DispClay 1-2 mm and DispClay 8-16 mm) and clay-SOM disintegration (DI, the ratio between clay particles retrieved without and with SOM removal). The SSS tests were related to soil organic carbon (SOC), permanganate oxidizable C (POXC) and hot water-extractable C (HWC). The decrease in SOC after termination of grassland was greater than the increase in SOC when introducing grassland. In contrast, it was faster to restore degraded soil than to degrade grassland soil with respect to SSS at macro-aggregate scale. The effect of management changes was more pronounced for 8-16 mm than 1-2 mm aggregates indicating a larger sensitivity towards tillage-induced breakdown of binding agents in larger aggregates. At microscale, SSS depended on SOC content regardless of management. Soil management affected macroscale structural stability beyond what is revealed from measuring changes in OM fractions, underlining the need to include both bonding and binding mechanisms in the interpretation of changes in SSS induced by management.

Animal carcass- and wood-derived biochars improved nutrient bioavailability, enzyme activity, and plant growth in metal-phthalic acid ester co-contaminated soils: A trial for reclamation and improvement of degraded soils.

Reclamation of degraded soils such as those with low organic carbon content and soils co-contaminated with toxic elements and phthalic acid esters (PAEs) is of great concern. Little is known about the efficiency of plant- and animal-derived biochars for improving plant growth and physicochemical and biological properties of co-contaminated soils, particularly under low content of organic matter. Hence, a pot trial was carried out by growing pak choi (Brassica chinensis L.) to assess the influence of different doses (0, 0.5, 1, 2, and 4%) of animal (pig carcass) and wood (Platanus orientalis) derived biochars on soil properties, nutrient availabilities, plant growth, and soil enzyme activities in two soils containing low (LOC) and high (HOC) organic carbon contents and co-contaminated with di-(2-ethylhexyl) phthalic acid (DEHP) and cadmium (Cd). Biochar applications improved pH, salinity, carbon content, and cation exchange capacity of both soils. Addition of biochars significantly increased the bioavailability and uptake of phosphorus and potassium in the plants in both soils with greater effects from pig biochar than wood biochar. Biochar additions also significantly enhanced urease, sucrase, and catalase activities, but suppressed acid phosphatase activity in both soils. The impact of pig biochar was stronger on urease and acid phosphatase, while the wood biochar was more effective with sucrase and catalase activities. The biomass yield of pak choi was significantly increased after biochar addition to both soils, especially in 2% pig biochar treatment in the LOC soil. The positive response of soil enzymes activities and plant growth for biochar addition to the Cd and DEHP co-contaminated soils indicate that both biochars, particularly the pig biochar can mitigate the risk of these pollutants and prove to be eco-friendly and low-cost amendments for reclaiming these degraded soils.

Editorial: New Research on Soil Degradation and Restoration.

The Virtual Special Issue (VSI) "New Research on Soil Degradation and Restoration" was proposed by the Guest-Editors (the authors of this editorial piece) to Journal of Environmental Management taking into account the following aspects: (a) Firstly, soil degradation is a main issue all over the world; (b) Secondly, physical, chemical and biological degradation of soil environments need detailed research, also going deeper in some new aspects poorly covered up to now; and (c) Similarly, new quality research on restoration of degraded soils, dumping sites, different areas affected by mining activities, and so on, would be clearly useful in order to prevent and/or solve critical environmental hazards. As a result, 110 manuscripts were submitted to the VSI by authors from around the world, and near 50 high quality works were finally published. The Guest-Editors of the VSI consider that the papers published will be of great interest for researchers working in this field, as well as for the overall community, as they include aspects clearly relevant at a global level.

Exclosures improve degraded landscapes in the sub-humid Ethiopian Highlands: the Ferenj Wuha watershed.

Land resources in developing countries are facing intense degradation due to deforestation and subsequent loss of organic matter from continuous tillage that causes soil erosion and gulley formation. The Ethiopian highlands are especially and severely affected. One of the land and water management practices to counteract this problem, fenced areas to prevent livestock access (called exclosures), has been in practice for the last few decades in the semi-arid highlands of Ethiopia but its effect on degraded landscapes has not been well researched -- especially in the sub-humid and humid highlands. The aim of this study is to evaluate the effects of exclosures on improving degraded landscapes in the sub-humid highlands. The research was carried out in the Ferenj Wuha watershed, in the northwestern sub-humid Ethiopian highlands, where land and water management practices were implemented starting in 2011. Vegetation was inventoried and aboveground biomass, carbon and nutrient stock determined for communal grazing land, exclosures and for other uses. In addition, soil samples were collected for nutrient analysis. Our results show that exclosures have a richer and more diverse set of plant species compared to communal grazing land. Establishment of an exclosure also enhanced organic carbon, total nitrogen and available phosphorus. Over a six-year period, aboveground biomass increased by 54 Mg ha-1 (or 81%) at the watershed scale because of the conversion of communal grazing land to exclosures. The improvement in soil nutrients due to exclosures, in turn, increased carbon and nutrient stock. The results support regeneration of degraded landscapes by restoring vegetation, soil fertility, carbon and nutrient stocks in the Northwestern highlands of Ethiopia. However, additional research is required to more accurately quantify these improvements because current research efforts that sample only the surface soils seem to indicate that the capacity of exclosures to increase soil carbon storage is decreasing when annual rainfall is increasing.

Role of sepiolite for cadmium (Cd) polluted soil restoration and spinach growth in wastewater irrigated agricultural soil.

Metals that contaminate soil are one of the major problems seriously affecting sustainable agriculture worldwide. Cadmium (Cd) toxicity to agricultural crops is a global problem. Mobility of Cd in contaminated soil can be minimized by the amendment of soil passivators which will ultimately reduce its movement from soil to plants. A pot study was performed to evaluate the impact of sepiolite from 1% to 5% on Cd solubility and its accumulation in spinach tissues. Soil pH, Cd fractionation, Cd accumulation in spinach tissue and Cd adsorption mechanism were determined. Results were recorded that soil pH was increased from 0.3 to 1.0 units with the increasing rate of sepiolite from 1% to 5%. Similarly, Cd contents in acid soluble phase was decreased by 42.8% and increased in residual phase by 35.8% at 5% rate, relative to control. Moreover, the significant reduction in Cd uptake by spinach shoots and roots was occurred by 26.2% and 30.6% at 5% rate, respectively. Furthermore, the maximum Cd adsorption capacity 37.35 mg g-1 was recorded at 5% rate relative to control. The analysis of FTIR, XRD and SEM also confirm the ability of sepiolite for Cd polluted soil restoration and thereby, reduces its phytoavailability in polluted soil to alleviate food security challenges.

Peroxidases from an invasive Mesquite species for management and restoration of fertility of phenolic-contaminated soil.

Phenolics drive the global economy, but they also pose threats to soil health and plant growth. Enzymes like peroxidase have the potential to remove the phenolic contaminants from the wastewater; however, their role in restoring soil health and improving plant growth has not yet been ascertained. We fractionated efficient peroxidases (MPx) from leaves of an invasive species of Mesquite, Prosopis juliflora, and demonstrated its superiority over horseradish peroxidase (HRP) in remediating phenol, 3-chlorophenol (3-CP), and a mixture of chlorophenols (CP-M), from contaminated soil. MPx removes phenolics over a broader range of pH (2.0-9.0) as compared with HRP (pH: 7.0-8.0). In soil, replacing H2O2 with CaO2 further increases the phenolic removal efficiency of MPx (≥90% of phenol, ≥ 70% of 3-CP, and ≥90% of CP-M). MPx maintains ~4-fold higher phenolic removal efficiency than purified HRP even in soils with extremely high contaminant concentration (2 g phenolics/kg of soil), which is desirable for environmental applications of enzymes for remediation. MPx treatment restores soil biological processes as evident by key enzymes of soil fertility viz. Acid- and alkaline-phosphatases, urease, and soil dehydrogenase, and improves potential biochemical fertility index of soil contaminated with phenolics. MPx treatment also assists the Vigna mungo test plant to overcome toxicant stress and grow healthy in contaminated soils. Optimization of MPx for application in the field environment would help both in the restoration of phenolic-contaminated soils and the management of invasive Mesquite.

Long-term effects of two organic amendments on bacterial communities of calcareous mediterranean soils degraded by mining.

The application of organic amendments to improve the chemical and biological properties of degraded soils from calcareous quarries is necessary to accelerate restoration processes. The aim of this study is to assess the success of different restoration treatments in the long-term using two organic amendments (sewage sludge from urban waste water (SS) and compost from domestic solid waste (CW)). The chemical properties and bacterial communities of restored soils were compared with unamended soils (NA) and surrounding natural soils (NS) from a limestone quarry in a semi-arid ecosystem. After 10 years of the addition of organic amendments, the abundance of soil bacteria, diversity, and taxonomic composition at the phylum and genus level in each soil type was analysed by rRNA 16 S amplification (PCR), sequencing using Illumina, and comparison with the SILVA database using QIIME2 software. The relationships between soil bacterial taxa and chemical soil properties (pH, electrical conductivity (EC), total organic carbon (TOC), and total nitrogen content (TN)) were also studied, as well as the interrelations between soil bacterial taxa at the genus level or the next upper taxonomic level identified. The organic amendments changed the chemical properties of the restored soils, influencing the microbial communities of the restored soils. CW treatment was the organic amendment that most resembled NS, favouring in the long-term a greater diversity and proliferation of bacteria. Several bacterial communities, more abundant in NA and CW soils, were strongly correlated with each other (Craurococcus, Phaselicystis, Crossiella, etc.), forming a bacterial co-occurrence pattern (Co-occurrence pattern 1). Those bacteria showed high significant positive correlations with TOC, TN, and EC and negative correlations with the soil pH. In contrast, NA soils presented other groups of bacterial communities (Co-occurrence pattern 2) represented by Sphingomonas, Rubellimicrobium, Noviherbaspirillum, Psychroglaciecola and Caenimonas, which showed high significant positive correlations with soil pH and negative correlations with TOC, TN, and EC. The distance-based redundancy analysis indicated that SS soils remained in an intermediate stage of chemical and biological quality between NS and NA soils. Our results demonstrate that soil chemical properties and soil bacterial communities significantly changed with organic amendments in calcareous Mediterranean soils degraded by mining.

Restoring effect of soil acidity and Cu on N2O emissions from an acidic soil.

Heavy metals are believed to impact soil processes by influencing microbial communities, nutrient cycling or exchanging for essential plant nutrients. Soil pH adjustment highly influences the bio-availability of nutrients and microbial processes. We examined the effect of soil pH manipulation and copper (Cu as CuCl2.2H2O) application on nitrogen (N) cycling and nitrous oxide (N2O) emissions from an acid soil. Increasing amounts of Cu (0, 250, 500 and 1000 mg kg-1) were added to an acidic soil (pH = 5.44) that was further amended with increasing amounts of dolomite [CaMg(CO3)2] to increase soil pH. Dolomite increased soil pH values, which reached a maximum without Cu application (-Cu) at day 42 of the experiment. The soil pH values decreased with increasing dose of Cu, and remained low as compared with both control and dolomite amended soil. Ammonium (NH4+-N) concentrations were higher in Cu contaminated soil as compared with the control and dolomite treated soil. Nitrate (NO3--N) concentrations increased in dolomite treated soil when compared with the +Cu alone treatments and control. Microbial biomass carbon (MBC) and nitrogen (MBN) contents were higher in dolomite treated soil as compared with the +Cu treatments and control. The application of increasing amounts of Cu progressively decreased soil MBC and MBN. Nitrous oxide emissions were higher (p ≤ 0.01) in +Cu soil as compared with the control, and increased with increasing Cu concentration in soil. Application of dolomite highly suppressed soil N2O emissions in both +Cu and -Cu soils. The results indicate that the effects of heavy metal contamination (specifically Cu contamination) can increase N2O emissions, but this can be effectively mitigated through increasing soil pH, also decreasing potential toxic effects on soil microorganisms.

Implications of mycoremediated dry olive residue application and arbuscular mycorrhizal fungi inoculation on the microbial community composition and functionality in a metal-polluted soil.

Metal-polluted soils represent hostile environments affecting the composition and functions of soil microbial communities. This study evaluated the implication of combining the mycoremediated dry olive residue (MDOR) amendment application with the inoculation of the arbuscular mycorrhizal fungi (AMF) Funneliformis mosseae in restoring the quality, composition, and functionality of soil microbial communities. To achieve this aim, a mesocosms experiment was set up that included three variations: i) with and without application of Penicillium chrysogenum-10-transformed MDOR (MDOR_Pc), and Chondrosterum purpureum-transformed MDOR (MDOR_Cp) amendments; ii) with and without F. mosseae inoculation; and iii) 30-day and 60-day soil treatment time. As a result of this combined treatment, changes in the soil labile organic C and N fractions were observed throughout the experiment. Increases in the abundance of phospholipid fatty acids (PLFAs) for bacteria, actinobacteria, and Gram- and Gram+ bacteria were also recorded at the end of the experiment. The addition of MDOR amendments boosted fungal and AM fungi communities. AM fungi root and soil colonization was also enhanced as the result of improvement nutrient turnover and spatial conditions caused by adding MDOR in combination with an inoculation of F. mosseae. The composition and functionality of microbial communities seemed to be an important ecological attribute indicating an apparently fully functional restoration of this metal-polluted soil and therefore suggesting the suitability of the combined MDOR and AM fungus treatment as a reclamation practice.