The EGFR signaling pathway controls gut progenitor differentiation during planarian regeneration and homeostasis.

The planarian Schmidtea mediterranea maintains and regenerates all its adult tissues through the proliferation and differentiation of a single population of pluripotent adult stem cells (ASCs) called neoblasts. Despite recent advances, the mechanisms regulating ASC differentiation into mature cell types are poorly understood. Here, we show that silencing of the planarian EGF receptor egfr-1 by RNA interference (RNAi) impairs gut progenitor differentiation into mature cells, compromising gut regeneration and maintenance. We identify a new putative EGF ligand, nrg-1, the silencing of which phenocopies the defects observed in egfr-1(RNAi) animals. These findings indicate that egfr-1 and nrg-1 promote gut progenitor differentiation, and are thus essential for normal cell turnover and regeneration in the planarian gut. Our study demonstrates that the EGFR signaling pathway is an important regulator of ASC differentiation in planarians.

Type IX Collagen Turnover Is Altered in Patients with Solid Tumors.

The fibrotic tumor microenvironment, characterized by its intricate extracellular matrix (ECM), consists of many collagens with diverse functions and unexplored biomarker potential. Type IX collagen is a member of the low-abundance collagen family known as the fibril-associated collagen with interrupted triple helices (FACITs) and is found mostly in cartilage. Its role in the tumor microenvironment remains unexplored. To investigate the biomarker potential of a type IX collagen in cancer, an immuno-assay was developed (PRO-C9) and technical assay performance was evaluated for the assessment of serum. PRO-C9 levels were measured in serum samples from 259 patients with various solid tumor types compared to serum levels from 73 healthy controls. PRO-C9 levels were significantly elevated in patients with solid tumors including bladder, breast, colorectal, gastric, head and neck, lung, melanoma, ovarian, pancreatic, and renal compared to levels in healthy controls (p < 0.05-p < 0.0001). PRO-C9 could discriminate between patients with cancer and healthy controls, with the area under the receiver operating characteristic values ranging from 0.58 to 0.86 (p < 0.3-p < 0.0001), indicating potential diagnostic utility. This study suggests that type IX collagen turnover is altered in patients with solid tumors and demonstrates the feasibility of using PRO-C9 as a non-invasive serum-based biomarker with relevance in multiple cancer types. Furthermore, these results underscore the potential utility of PRO-C9 to better elucidate the biology of FACITs in cancers.

Trabecular, but not cortical, bone tissue protein synthesis rates are lower in the femoral head when compared to the proximal femur following an intracapsular hip fracture.

BACKGROUND: All musculoskeletal tissues are in a constant state of turnover, with a dynamic equilibrium between tissue protein synthesis and breakdown rates. The synthesis of protein allows musculoskeletal tissues to heal following injury. Yet, impaired tissue healing is observed following certain injuries, such as geriatric hip fractures. It is assumed that the regenerative properties of femoral head bone tissue are compromised following an intracapsular hip fracture and therefore hip replacement surgery is normally performed. However, the actual impact on in vivo bone protein synthesis rates has never been determined. DESIGN: In the present study, 10 patients (age: 79 ± 10 y, BMI: 24 ± 4 kg/m2) with an acute (<24 h) intracapsular hip fracture received a primed continuous intravenous infusion of L-[ring-13C6]-phenylalanine before and throughout their hip replacement surgery. Trabecular and cortical bone tissue from both the femoral head and proximal femur were sampled during surgery to assess protein synthesis rates of affected (femoral head) and unaffected (proximal femur) bone tissue, respectively. In addition, tissue samples of gluteus maximus muscle, synovium, ligamentum teres, and femoral head cartilage were collected. Tissue-specific protein synthesis rates were assessed by measuring L-[ring-13C6]-phenylalanine incorporation in tissue protein. RESULTS: Femoral head trabecular bone protein synthesis rates (0.056 [0.024-0.086] %/h) were lower when compared to proximal femur trabecular bone protein synthesis rates (0.081 [0.056-0.118] %/h; P = 0.043). Cortical bone protein synthesis rates did not differ between the femoral head and proximal femur (0.041 [0.021-0.078] and 0.045 [0.028-0.073] %/h, respectively; P > 0.05). Skeletal muscle, synovium, ligamentum teres, and femoral head cartilage protein synthesis rates averaged 0.080 [0.048-0.089], 0.093 [0.051-0.130], 0.121 [0.110-0.167], and 0.023 [0.015-0.039] %/h, respectively. CONCLUSION: In contrast to the general assumption that the femoral head is avital after an intracapsular displaced hip fracture in the elderly, our data show that bone protein synthesis is still ongoing in femoral head bone tissue during the early stages following an intracapsular hip fracture in older patients. Nonetheless, trabecular bone protein synthesis rates are lower in the femoral head when compared to the proximal femur in older patients following an acute intracapsular hip fracture. Trial register no: NL9036.

Experimentally derived biochemical modelling parameters to improve understanding of aquaculture's effect on marine food webs.

To construct robust biogeochemical models for application to marine-based aquaculture settings, careful selection of appropriate model parameters is necessary. This study used an experimental approach to establish biomarkers of farm and marine-derived organic matter, and to derive isotopic turnover rates, and trophic discrimination factors specific to aquaculture associated food webs. A shift towards a farm-derived resource base resulted in consumer tissues more depleted in the carbon-13 isotope (indicated by more negative δ13C values) and a higher proportion of oleic acid, linoleic acid, and alpha-linoleic acid in the fatty acid profile of consumers over time. Measured trophic discrimination factors between dietary sources and consumer tissues demonstrated high variability among species and tissue types, ranging from -0.25‰ to 0.82‰ for Δ13C and from -0.77‰ to 6.8‰ for Δ15N. Stable isotope half-lives were also diverse among species and tissue types, ranging from <7 days to 462 days. Results demonstrated that construction of robust models for tracing assimilation of farm-derived organic matter through marine food webs requires the use of taxa and tissue specific parameters. Turnover rates have applications for understanding assimilative capacity of communities and for managing populations within the ecological footprint of farms.

[Trophic niche partitioning of four pelagic shark species in the tropical Atlantic based on multi-tissue stable isotopes ratios]. / åŸºäºŽå¤šç»„ç»‡ç¨³å®šåŒä½ç´ æ¯”å€¼çš„çƒ­å¸¦å¤§è¥¿æ´‹4ç§é²¨é±¼è¥å »ç”Ÿæ€ä½åˆ†åŒ–.

Stable carbon and nitrogen isotope ratios (δ13C and δ15N, respectively) of multiple tissues with different turnover rates can provide trophic information at different timescales, and thus play an important role in tracing the changes of feeding, habitat utilization and trophic niche of consumers. The δ13C and δ15N contents of muscle, liver and blood of blue sharks (Prionace glauca), longfin mako sharks (Isurus paucus), crocodile sharks (Pseudocarcharias kamoharai) and shortfin mako sharks (I. oxyrinchus) from tropical Atlantic were measured, and the trophic niche was evalua-ted. The results showed that I. oxyrinchus, P. kamoharai, and P. glauca had similar δ15N values, higher than that of I. paucus. Feeding segregation was found between P. glauca and other species, showing unique trophic niche. The largest trophic niche width was observed in I. oxyrinchus, indicating the high diversity of prey and (or) feeding habitats. High trophic niche overlap was found in P. kamoharai and I. oxyrinchus, implying their potential competition for resources. There was no correlation between the differences among tissues in the δ13C or δ15N values and the body size of I. oxyrinchus, P. kamoharai and P. glauca, indicating no recent diet shifts for those species. I. paucus showed significant correlation between δ15N differences in liver, blood and muscle with the shark fork length, indicating its short-term diet shift. The similarity of δ13C and δ15N values and the higher metabolic rates of liver and blood were found in all four shark species, implying the similar incorporation rates of both tissues, which were considered as the short-term indicator of diet.

Biochemical marker research in hemophilic arthropathy: A systematic review.

Hemophilic arthropathy (HA) causes major morbidity. Breakthrough therapies reduce the bleeding frequency tremendously, but well-defined joint outcome assessments with a focus on early changes and subclinical damage are lacking. Biomarkers reflecting joint tissue turnover/inflammation might be useful to predict invalidating arthropathy. This systematic review summarized and categorized publications on blood/urinary biomarkers in HA to provide leads for implementation. A PubMed/EMBASE search was performed on September 9, 2019. All publications were assessed and allocated to one or several BIPED-categories, based on the utility of biomarkers. Of the initial 1307 publications found, 27 were eligible for inclusion. The majority (81%, n = 32/42) was cross-sectional in design, including relatively small numbers of patients (median 44, interquartile range 35-78). Fourteen percent (n = 6/42) investigated dynamic changes around a bleeding or treatment. Only two studies investigated the prognostic value of biomarkers. Most promising biomarkers were serum Coll2-1, COL-18N, COMP, C1,2C, C2M, CS846, MIF, plasma sVCAM-1 and urinary CTX-II. Comparing performances and pooling data was not possible due to heterogeneity. Currently, biomarker research in HA is still in an explorative stage and not yet sufficient for translation into daily practice. Clearly, larger homogeneous longitudinal studies in well-defined populations should be performed for further development.

Overcoming multi-year impacts of maternal isotope signatures using multi-tracers and fast turnover tissues in juvenile sharks.

Stable isotopes are often used to determine the ecological role of different age classes of animals, but particularly for young animals this approach may be compromised. During gestation and or incubation body tissues of the young are derived directly from the mother. In neonates or post hatching, there is a period of transformation as the young grow and forage independently, but during this period different organs will continue to reflect the maternal isotopic signature as a function of their turnover rate. How long this maternal hangover persists remains poorly understood. We applied a multi-tracer approach (δ15N, δ13C and δ34S) to stable isotope signatures in juvenile bull sharks (Carcharhinus leucas) up to 6.5 years post parturition. We found that maternal provisioning was detectable for up to 3.5 years after birth in muscle but only detectable in young-of-the-year for liver. Inclusion of sulphur revealed when maternal signatures disappeared from low-turnover tissue, while also identifying the spatial and trophic ecology patterns from fast-turnover tissue. These results reveal the importance of sampling fast turnover tissues to study the trophic ecology of juvenile elasmobranchs, and how the use of only δ15N and δ13C isotopes is likely to make maternal patterns more difficult to detect.

The Use of Intrinsic Markers for Studying the Migratory Movements of Bats.

Mortality of migratory bat species at wind energy facilities is a well-documented phenomenon, and mitigation and management are partially constrained by the current limited knowledge of bat migratory movements. Analyses of biochemical signatures in bat tissues ("intrinsic markers") can provide information about the migratory origins of individual bats. Many tissue samples for intrinsic marker analysis may be collected from living and dead bats, including carcasses collected at wind energy facilities. In this paper, we review the full suite of available intrinsic marker analysis techniques that may be used to study bat migration, with the goal of summarizing the current literature and highlighting knowledge gaps and opportunities. We discuss applications of the stable isotopes of hydrogen, oxygen, nitrogen, carbon, sulfur; radiogenic strontium isotopes; trace elements and contaminants; and the combination of these markers with each other and with other extrinsic markers. We further discuss the tissue types that may be analyzed for each and provide a synthesis of the generalized workflow required to link bats to origins using intrinsic markers. While stable hydrogen isotope techniques have clearly been the leading approach to infer migratory bat movement patterns across the landscape, here we emphasize a variety of lesser used intrinsic markers (i.e., strontium, trace elements, contaminants) that may address new study areas or answer novel research questions.

The Role of Pi, Glutamine and the Essential Amino Acids in Modulating the Metabolism in Diabetes and Cancer.

PURPOSE: Re-examine the current metabolic models. METHODS: Review of literature and gene networks. RESULTS: Insulin activates Pi uptake, glutamine metabolism to stabilise lipid membranes. Tissue turnover maintains the metabolic health. Current model of intermediary metabolism (IM) suggests glucose is the source of energy, and anaplerotic entry of fatty acids and amino acids into mitochondria increases the oxidative capacity of the TCA cycle to produce the energy (ATP). The reduced cofactors, NADH and FADH2, have different roles in regulating the oxidation of nutrients, membrane potentials and biosynthesis. Trans-hydrogenation of NADH to NADPH activates the biosynthesis. FADH2 sustains the membrane potential during the cell transformations. Glycolytic enzymes assume the non-canonical moonlighting functions, enter the nucleus to remodel the genetic programmes to affect the tissue turnover for efficient use of nutrients. Glycosylation of the CD98 (4F2HC) stabilises the nutrient transporters and regulates the entry of cysteine, glutamine and BCAA into the cells. A reciprocal relationship between the leucine and glutamine entry into cells regulates the cholesterol and fatty acid synthesis and homeostasis in cells. Insulin promotes the Pi transport from the blood to tissues, activates the mitochondrial respiratory activity, and glutamine metabolism, which activates the synthesis of cholesterol and the de novo fatty acids for reorganising and stabilising the lipid membranes for nutrient transport and signal transduction in response to fluctuations in the microenvironmental cues. Fatty acids provide the lipid metabolites, activate the second messengers and protein kinases. Insulin resistance suppresses the lipid raft formation and the mitotic slippage activates the fibrosis and slow death pathways.

Eye Absence Does Not Regulate Planarian Stem Cells during Eye Regeneration.

Dividing cells called neoblasts contain pluripotent stem cells and drive planarian flatworm regeneration from diverse injuries. A long-standing question is whether neoblasts directly sense and respond to the identity of missing tissues during regeneration. We used the eye to investigate this question. Surprisingly, eye removal was neither sufficient nor necessary for neoblasts to increase eye progenitor production. Neoblasts normally increase eye progenitor production following decapitation, facilitating regeneration. Eye removal alone, however, did not induce this response. Eye regeneration following eye-specific resection resulted from homeostatic rates of eye progenitor production and less cell death in the regenerating eye. Conversely, large head injuries that left eyes intact increased eye progenitor production. Large injuries also non-specifically increased progenitor production for multiple uninjured tissues. We propose a model for eye regeneration in which eye tissue production by planarian stem cells is not directly regulated by the absence of the eye itself.

Turnover of hydrogen isotopes in lake sturgeon blood: implications for tracking movements of wild populations.

Naturally occurring deuterium ((2)H) in biota can be used to trace movement, migration and geographic origin of a range of organisms. However, to evaluate movements of animals using δ(2)H measurements of tissues, it is necessary to establish the turnover time of (2)H in the tissues and the extent of isotopic discrimination from different environmental (2)H sources to those tissues. We investigated the turnover of (2)H in lake sturgeon (Acipenser fulvescens) blood by manipulating both environmental water δ(2)H and diet δ(2)H over a four-month period. The half-life of deuterium in lake sturgeon blood was 37.9 days after an increase in the environmental water δ(2)H of +714 ‰. However, no clear turnover in blood (2)H occurred over the same period in a separate trial following a change of -63.8 ‰ or +94.2 ‰ in diet. These findings suggest that environmental water (2)H exchanges much faster with blood than diets and that blood δ(2)H values can be used to trace movements of sturgeon and other fish moving among isotopically distinct waters.