Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 93
Filtrar
1.
Phytopathology ; 114(1): 200-210, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37435950

RESUMO

Plant-pathogenic phytoplasmas secrete specific virulence proteins into a host plant to modulate plant function for their own benefit. Identification of phytoplasmal effectors is a key step toward clarifying the pathogenic mechanisms of phytoplasma. In this study, Zaofeng3, also known as secreted jujube witches' broom phytoplasma protein 3 (SJP3), was a homologous effector of SAP54 and induced a variety of abnormal phenotypes, such as phyllody, malformed floral organs, witches' broom, and dwarfism in Arabidopsis thaliana. Zaofeng3 can also induce small leaves, dwarfism, and witches' broom in Ziziphus jujuba. Further experiments showed that the three complete α-helix domains predicted in Zaofeng3 were essential for induction of disease symptoms in jujube. Yeast two-hybrid library screening showed that Zaofeng3 mainly interacts with proteins involved in flower morphogenesis and shoot proliferation. Bimolecular fluorescence complementation assays confirmed that Zaofeng3 interacted with these proteins in the whole cell. Overexpression of zaofeng3 in jujube shoot significantly altered the expression patterns of ZjMADS19, ZjMADS47, ZjMADS48, ZjMADS77, and ZjTCP7, suggesting that overexpressing zaofeng3 might induce floral organ malformation and witches' broom by altering the expression of the transcriptional factors involved in jujube morphogenesis.


Assuntos
Arabidopsis , Cytisus , Nanismo , Phytoplasma , Ziziphus , Phytoplasma/genética , Doenças das Plantas/genética , Plantas , Proliferação de Células
2.
Int J Mol Sci ; 25(4)2024 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-38396939

RESUMO

The typical symptom of Paulownia witches' broom (PaWB), caused by phytoplasma infection, is excessive branching, which is mainly triggered by auxin metabolism disorder. Aux/IAA is the early auxin-responsive gene that participates in regulating plant morphogenesis such as apical dominance, stem elongation, lateral branch development, and lateral root formation. However, no studies have investigated the response of the Aux/IAA gene family to phytoplasma infection in Paulownia fortunei. In this study, a total of 62 Aux/IAA genes were found in the genome. Phylogenetic analysis showed that PfAux/IAA genes could be divided into eight subgroups, which were formed by tandem duplication and fragment replication. Most of them had a simple gene structure, and several members lacked one or two conserved domains. By combining the expression of PfAux/IAA genes under phytoplasma stress and SA-treated phytoplasma-infected seedlings, we found that PfAux/IAA13/33/45 may play a vital role in the occurrence of PaWB. Functional analysis based on homologous relationships showed a strong correlation between PfAux/IAA45 and branching. Protein-protein interaction prediction showed that PfARF might be the binding partner of PfAux/IAA, and the yeast two-hybrid assay and bimolecular fluorescent complementary assay confirmed the interaction of PfAux/IAA45 and PfARF13. This study provides a theoretical basis for further understanding the function of the PfAux/IAA gene family and exploring the regulatory mechanism of branching symptoms caused by PaWB.


Assuntos
Cytisus , Lamiales , Phytoplasma , Phytoplasma/genética , Filogenia , Lamiales/genética , Ácidos Indolacéticos
3.
Int J Mol Sci ; 25(4)2024 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-38397102

RESUMO

The GRAS (GAI\RGA\SCL) gene family encodes plant-specific transcription factors that play crucial roles in plant growth and development, stress tolerance, and hormone network regulation. Plant dwarfing symptom is mainly regulated by DELLA proteins of the GRAS gene subfamily. In this study, the association between the GRAS gene family and Paulownia witches' broom (PaWB) was investigated. A total of 79 PfGRAS genes were identified using bioinformatics methods and categorized into 11 groups based on amino acid sequences. Tandem duplication and fragment duplication were found to be the main modes of amplification of the PfGRAS gene family. Gene structure analysis showed that more than 72.1% of the PfGRASs had no introns. The genes PfGRAS12/18/58 also contained unique DELLA structural domains; only PfGRAS12, which showed significant response to PaWB phytoplasma infection in stems, showed significant tissue specificity and responded to gibberellin (GA3) in PaWB-infected plants. We found that the internodes were significantly elongated under 100 µmol·L-1 GA3 treatment for 30 days. The subcellular localization analysis indicated that PfGRAS12 is located in the nucleus and cell membrane. Yeast two-hybrid (Y2H) and bimolecular fluorescence complementation (BiFC) assays confirmed that PfGRAS12 interacted with PfJAZ3 in the nucleus. Our results will lay a foundation for further research on the functions of the PfGRAS gene family and for genetic improvement and breeding of PaWB-resistant trees.


Assuntos
Cytisus , Lamiales , Magnoliopsida , Phytoplasma , Magnoliopsida/genética , Doenças das Plantas/genética , Phytoplasma/genética , Melhoramento Vegetal , Lamiales/genética
4.
Int J Mol Sci ; 24(12)2023 Jun 18.
Artigo em Inglês | MEDLINE | ID: mdl-37373459

RESUMO

Jujube witches' broom disease (JWB), caused by Candidatus Phytoplasma ziziphi, is the most destructive phytoplasma disease threatening the jujube industry. Tetracycline derivatives treatments have been validated to be capable of recovering jujube trees from phytoplasma infection. In this study, we reported that oxytetracycline hydrochloride (OTC-HCl) trunk injection treatment could recover more than 86% of mild JWB-diseased trees. In order to explore the underlying molecular mechanism, comparative transcriptomic analysis of healthy control (C group), JWB-diseased (D group) and OTC-HCl treated JWB-diseased (T group) jujube leaves was performed. In total, 755 differentially expressed genes (DEGs), including 488 in 'C vs. D', 345 in 'D vs. T' and 94 in 'C vs. T', were identified. Gene enrichment analysis revealed that these DEGs were mainly involved in DNA and RNA metabolisms, signaling, photosynthesis, plant hormone metabolism and transduction, primary and secondary metabolisms, their transportations, etc. Notably, most of the DEGs identified in 'C vs. D' displayed adverse change patterns in 'D vs. T', suggesting that the expression of these genes was restored after OTC-HCl treatment. Our study revealed the influences of JWB phytoplasma infection and OTC-HCl treatment on gene expression profiling in jujube and would be helpful for understanding the chemotherapy effects of OTC-HCl on JWB-diseased jujube.


Assuntos
Cytisus , Oxitetraciclina , Phytoplasma , Ziziphus , Doenças por Fitoplasmas , Ziziphus/genética , Ziziphus/metabolismo , Oxitetraciclina/farmacologia , Cytisus/genética , Doenças das Plantas/genética , Phytoplasma/genética , Perfilação da Expressão Gênica
5.
Int J Mol Sci ; 24(14)2023 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-37511472

RESUMO

The fungus Moniliophthora perniciosa secretes protein effectors that manipulate the physiology of the host plant, but few effectors of this fungus have had their functions confirmed. We performed functional characterization of a promising candidate effector of M. perniciosa. The inoculation of rBASIDIN at 4 µmol L-1 in the mesophyll of leaflets of Solanum lycopersicum caused symptoms of shriveling within 6 h without the presence of necrosis. However, when sprayed on the plant at a concentration of 11 µmol L-1, it caused wilting symptoms only 2 h after application, followed by necrosis and cell death at 48 h. rBASIDIN applied to Theobroma cacao leaves at the same concentration caused milder symptoms. rBASIDIN caused hydrogen peroxide production in leaf tissue, damaging the leaf membrane and negatively affecting the photosynthetic rate of Solanum lycopersicum plants. Phylogenetic analysis indicated that BASIDIN has orthologs in other phytopathogenic basidiomycetes. Analysis of the transcripts revealed that BASIDIN and its orthologs are expressed in different fungal species, suggesting that this protein is differentially regulated in these basidiomycetes. Therefore, the results of applying BASIDIN allow the inference that it is an effector of the fungus M. perniciosa, with a strong potential to interfere in the defense system of the host plant.


Assuntos
Agaricales , Basidiomycota , Cacau , Cytisus , Cacau/microbiologia , Filogenia , Agaricales/metabolismo , Basidiomycota/genética , Necrose , Doenças das Plantas/microbiologia
6.
Oecologia ; 198(1): 243-254, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34981220

RESUMO

Recovery of ecosystem properties following removal of invasive plants likely varies with characteristics of the plant and the relative soil quality at a given site. These factors may influence the occurrence of soil legacies and secondary invasions, hindering the effectiveness of restoration strategies. We assessed the potential for ecosystem recovery following removal of N-fixing Scotch broom for 4 years at two sites that contrasted strongly in soil quality in western Washington and Oregon, USA. Comparisons were made among plots, where Scotch broom was never present (uninvaded), retained, or removed. Scotch broom removal increased PAR and soil temperature but had limited effects on soil moisture. Concentrations of soil Ca, Mg, K, and P were significantly lower with Scotch broom removal, with the effect being most pronounced at the low-quality site. NMS ordinations indicated that the treatments differed in vegetation composition, with limited recovery following broom removal. Non-native and native species varied inversely in their abundance responses, where non-native species abundance was greatest in the removal treatment, intermediate in the retained treatment, and lowest in the uninvaded treatment, indicating occurrence of a secondary invasion following removal. As with the soil response, effects were more pronounced at the low-quality site. Our findings indicate that Scotch broom removal exacerbates negative effects on soil chemistry and plant communities, with little evidence of recovery over our study period. These findings highlight the importance of controlling Scotch broom invasions immediately after the species establishes, especially on low-quality sites that are more susceptible to Scotch broom invasion.


Assuntos
Cytisus , Solo , Ecossistema , Espécies Introduzidas , Plantas
7.
Sensors (Basel) ; 22(19)2022 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-36236502

RESUMO

Thermal infrared hyperspectral imager is one of the frontier payloads in current hyperspectral remote sensing research. It has broad application prospects in land and ocean temperature inversion, environmental monitoring, and other fields. However, due to the influence of the production process of the infrared focal plane array and the characteristics of the material itself, the infrared focal plane array inevitably has blind pixels, resulting in spectral distortion of the data or even invalid data, which limits the application of thermal infrared hyperspectral data. Most of the current blind pixels detection methods are based on the spatial dimension of the image, that is, processing single-band area images. The push-broom thermal infrared hyperspectral imager works completely different from the conventional area array thermal imager, and only one row of data is obtained per scan. Therefore, the current method cannot be directly applied to blind pixels detection of push-broom thermal infrared hyperspectral imagers. Based on the imaging principle of push-broom thermal infrared hyperspectral imager, we propose a practical blind pixels detection method. The method consists of two stages to detect and repair four common types of blind pixels: dead pixel, dark current pixel, blinking pixel, and noise pixel. In the first stage, dead pixels and dark current pixels with a low spectral response rate are detected by spectral filter detection; noise pixels are detected by spatial noise detection; and dark current pixels with a negative response slope are detected by response slope detection. In the second stage, according to the random appearance of blinking pixels, spectral filter detection is used to detect and repair spectral anomalies caused by blinking pixels line by line. In order to verify the effectiveness of the proposed method, a flight test was carried out, using the Airborne Thermal-infrared Hyperspectral Imaging System (ATHIS), the latest thermal infrared imager in China, for data acquisition. The results show that the method proposed in this paper can accurately detect and repair blind pixel, thus effectively eliminating spectral anomalies and significantly improving image quality.


Assuntos
Cytisus , China , Temperatura
8.
Sensors (Basel) ; 22(17)2022 Aug 31.
Artigo em Inglês | MEDLINE | ID: mdl-36081033

RESUMO

Hyperspectral aerial imagery is becoming increasingly available due to both technology evolution and a somewhat affordable price tag. However, selecting a proper UAV + hyperspectral sensor combo to use in specific contexts is still challenging and lacks proper documental support. While selecting an UAV is more straightforward as it mostly relates with sensor compatibility, autonomy, reliability and cost, a hyperspectral sensor has much more to be considered. This note provides an assessment of two hyperspectral sensors (push-broom and snapshot) regarding practicality and suitability, within a precision viticulture context. The aim is to provide researchers, agronomists, winegrowers and UAV pilots with dependable data collection protocols and methods, enabling them to achieve faster processing techniques and helping to integrate multiple data sources. Furthermore, both the benefits and drawbacks of using each technology within a precision viticulture context are also highlighted. Hyperspectral sensors, UAVs, flight operations, and the processing methodology for each imaging type' datasets are presented through a qualitative and quantitative analysis. For this purpose, four vineyards in two countries were selected as case studies. This supports the extrapolation of both advantages and issues related with the two types of hyperspectral sensors used, in different contexts. Sensors' performance was compared through the evaluation of field operations complexity, processing time and qualitative accuracy of the results, namely the quality of the generated hyperspectral mosaics. The results shown an overall excellent geometrical quality, with no distortions or overlapping faults for both technologies, using the proposed mosaicking process and reconstruction. By resorting to the multi-site assessment, the qualitative and quantitative exchange of information throughout the UAV hyperspectral community is facilitated. In addition, all the major benefits and drawbacks of each hyperspectral sensor regarding its operation and data features are identified. Lastly, the operational complexity in the context of precision agriculture is also presented.


Assuntos
Cytisus , Tecnologia de Sensoriamento Remoto , Agricultura , Coleta de Dados , Tecnologia de Sensoriamento Remoto/métodos , Reprodutibilidade dos Testes
9.
Molecules ; 27(15)2022 Jul 29.
Artigo em Inglês | MEDLINE | ID: mdl-35956826

RESUMO

Understanding the influence of surfactants on the assembly of peptides has a considerable practical motivation. In this paper, we systematically study the anionic surfactant-assisted assembly of diphenylalanine (FF). FF forms broom-like structures in a concentration of sodium cholate (NaC) around the CMC, and assembles into linear and unidirectional rods in the presence of low and high surfactant concentrations. FF's improved hydrogen bonding and controlled assembly rates are appropriate for other anionic surfactants. At this stage, the use of FF as the simplest protein consequence can be helpful in the investigation of further protein-surfactant interactions.


Assuntos
Cytisus , Surfactantes Pulmonares , Dipeptídeos , Fenilalanina/química , Tensoativos/química
10.
J Environ Manage ; 235: 152-160, 2019 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-30682667

RESUMO

Abandoned mining areas are an environmental concern for aquatic and terrestrial ecosystems due to their unfavourable soil properties and high levels of potentially toxic elements. Despite this, some plant species may grow spontaneously and colonise these areas; being suitable in many cases for restoration practices, since they may accumulate metals in their tissues. This study aims to assess the effectiveness of 14 chemical soil extractants to predict the bioavailability of toxic elements (Cd, Pb and Zn) in soils from the abandoned Pb/Zn mine of Rubiais (NW Spain), based on root and shoot metal contents in Cytisus scoparius (L.) Link, which grows spontaneously in this area. Afterwards, its potential for phytoremediation activities was assessed. Mine soils showed high contents Cd (1.77-14.38 mg kg-1), Pb (850-2137 mg kg-1) and Zn (1754-12090 mg kg-1). Cytisus scoparius grows in spite of these high metal contents; accumulating Zn and Pb in its roots, Zn in the aerial part and excluding mostly Cd from its tissues. None of the extractants used to determine the bioavailable content of Pb allow predicting its availability for C. scoparius. However, LMWOA was the most effective extractant to determine the bioavailability of Cd and Zn for this species. Besides, NH4NO3 and Ca(NO3)2 are also good indicators for Zn bioavailability. The analysis of bioconcentration and translocation factors suggest that C. scoparius behaves like a Zn accumulator plant, whereas alternatively, it behaves like a Pb phytostabiliser and as a Cd excluder species. Thus, C. scoparius can be used as a species for mine soil restoration, decreasing the mobility of metals and preventing their dispersion to another ecosystem compartments.


Assuntos
Cytisus , Metais Pesados , Poluentes do Solo , Biodegradação Ambiental , Disponibilidade Biológica , Ecossistema , Chumbo , Solo , Espanha , Zinco
11.
Molecules ; 24(24)2019 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-31835831

RESUMO

New herbicides based on natural products are claimed to address weed resistance and environmental concerns related to synthetic herbicides. In our previous studies, certain volatile organic compounds (VOCs) produced by Ulex europaeus and Cytisus scoparius were argued to be responsible for the phytotoxicity of both shrub species. Interactions among VOCs were hypothesized to explain the inconsistency between the effects of the identified pure compounds and those naturally emitted from fresh plant material. In this work, eugenol, verbenone, terpinen-4-ol, α-terpineol, and linalool were assayed as binary mixtures of Amaranthus retroflexus and Digitaria sanguinalis. Powerful synergistic inhibitory effects were revealed for germination and early growth. Only 3.1 ppm of verbenone was enough to inhibit A. retroflexus germination when paired to other VOCs. Eugenol was capable of exacerbating the effects of terpinen-4-ol on A. retroflexus, even though it was innocuous when acting alone at 12.5 ppm. The verbenone and linalool pair produced very significant synergistic effects in terms of D. sanguinalis germination. The synergistic effects were predominantly irreversible for D. sanguinalis, since seeds exposed to paired VOCs were unable to recover their germination capacity after removing the phytotoxins or produced damaged seedlings. Both shrub species have been revealed as sources of natural herbicide molecules, with promising synergistic modes of action that deserve to be studied in depth.


Assuntos
Cytisus/química , Herbicidas/farmacologia , Ulex/química , Compostos Orgânicos Voláteis/farmacologia , Monoterpenos Acíclicos/química , Monoterpenos Acíclicos/farmacologia , Amaranthus/efeitos dos fármacos , Amaranthus/crescimento & desenvolvimento , Monoterpenos Bicíclicos/química , Monoterpenos Bicíclicos/farmacologia , Digitaria/efeitos dos fármacos , Digitaria/crescimento & desenvolvimento , Sinergismo Farmacológico , Eugenol/química , Eugenol/farmacologia , Germinação/efeitos dos fármacos , Herbicidas/química , Extratos Vegetais/química , Compostos Orgânicos Voláteis/química
12.
Molecules ; 23(8)2018 Aug 10.
Artigo em Inglês | MEDLINE | ID: mdl-30103409

RESUMO

The present study focuses on the chemical composition, antioxidant, antimicrobial, and antiproliferative activities of the ethyl acetate and aqueous extracts obtained from the aerial parts of Cytisus villosus Pourr. HPLC-DAD-ESI/MSn was used to identify the phenolic compounds, being (epi)gallocatechin dimer the major compound (111 ± 5 µg/g·dw) in the aqueous extract, while myricetin-O-rhamnoside (226 ± 9 µg/g·dw) was the main molecule in the ethyl acetate extract. Both extracts exhibited good scavenging activities against DPPH radical (EC50 µg/mL of 59 ± 2 and 31 ± 2 for aqueous and ethyl acetate extracts, respectively). However, the ethyl acetate extract demonstrated more potent quenching activities than the aqueous extract. The antimicrobial activities were assessed on selected Gram-positive (Staphylococcus epidermidis) and Gram-negative (Escherichia coli and Pseudomonas aeruginosa) bacteria, as well as on pathogenic fungus Candida glabrata. The extracts possessed selective and potent antimicrobial activities against the Gram-positive bacterium (IC50 of 186 ± 9 µg/mL and 92 ± 3 µg/mL for aqueous and ethyl acetate extracts, respectively). Finally, C. villosus extracts were evaluated for their antiproliferative potential on three human cancer cell lines representing breast and colon cancers. Although both extracts demonstrated sufficient growth inhibition of the three different cell lines, the ethyl acetate extract exhibited higher activity (LD50 values of 1.57 ± 0.06 mg/mL, 2.2 ± 0.1 mg/mL, and 3.2 ± 0.2 mg/mL for T47D, MCF-7, and HCT-116 cell lines). Both the extracts obtained from the aerial parts of C. villosus revealed very promising results and could be applied as functional agents in the food, pharmaceutical, and cosmeceutical industries.


Assuntos
Cytisus/química , Fenóis/química , Fenóis/farmacologia , Extratos Vegetais/química , Extratos Vegetais/farmacologia , Anti-Infecciosos/química , Anti-Infecciosos/farmacologia , Antineoplásicos Fitogênicos/química , Antineoplásicos Fitogênicos/farmacologia , Antioxidantes/farmacologia , Bactérias/efeitos dos fármacos , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Cromatografia Líquida de Alta Pressão , Fungos/efeitos dos fármacos , Humanos , Espectrometria de Massas , Testes de Sensibilidade Microbiana , Compostos Fitoquímicos/química , Compostos Fitoquímicos/farmacologia , Solventes
13.
Waste Manag Res ; 36(11): 1092-1099, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30198404

RESUMO

Wild Scotch broom ( Cytisus scoparius (L.) Link) shrubs are widely distributed throughout the world and, in some countries, are considered to be a threat to other plant species. The use of plant biomass from Scotch broom as a fertiliser seems to be the optimum solution for its disposal because it contains considerable amounts of macronutrients. However, its direct application to soils may cause phytotoxicity due to the release of polyphenols, which could negatively affect crop growth. This study evaluated the efficiency of vermicomposting in processing this leguminous plant on an industrial scale. Vermicomposting substantially reduced the biomass of Scotch broom (by 84%), mainly as a result of the loss of volatile solids. Simultaneously, the initial population of earthworms ( Eisenia andrei) increased remarkably throughout the process, offering the possibility of obtaining earthworm protein for animal feed. A nutrient-rich and stabilised peat-like material without polyphenol-associated phytotoxicity was obtained after 42 days of vermicomposting. Lower values of microbial biomass and activity, indicative of stabilised materials, were recorded at the end of the trial. These findings suggest that vermicomposting is an environmentally sound management system for Scotch broom and could easily be scaled up for industrial application.


Assuntos
Cytisus , Oligoquetos , Animais , Biomassa , Fertilizantes , Solo
14.
BMC Microbiol ; 17(1): 176, 2017 Aug 17.
Artigo em Inglês | MEDLINE | ID: mdl-28818052

RESUMO

BACKGROUND: Moniliophthora perniciosa is a phytopathogenic fungus responsible for witches' broom disease of cacao trees (Theobroma cacao L.). Understanding the molecular events during germination of the pathogen may enable the development of strategies for disease control in these economically important plants. In this study, we determined a comparative proteomic profile of M. perniciosa basidiospores during germination by two-dimensional SDS-PAGE and mass spectrometry. RESULTS: A total of 316 proteins were identified. Molecular changes during the development of the germinative tube were identified by a hierarchical clustering analysis based on the differential accumulation of proteins. Proteins associated with fungal filamentation, such as septin and kinesin, were detected only 4 h after germination (hag). A transcription factor related to biosynthesis of the secondary metabolite fumagillin, which can form hybrids with polyketides, was induced 2 hag, and polyketide synthase was observed 4 hag. The accumulation of ATP synthase, binding immunoglobulin protein (BiP), and catalase was validated by western blotting. CONCLUSIONS: In this study, we showed variations in protein expression during the early germination stages of fungus M. perniciosa. Proteins associated with fungal filamentation, and consequently with virulence, were detected in basidiospores 4 hag., for example, septin and kinesin. We discuss these results and propose a model of the germination of fungus M. perniciosa. This research can help elucidate the mechanisms underlying basic processes of host invasion and to develop strategies for control of the disease.


Assuntos
Agaricales/genética , Agaricales/metabolismo , Cacau/microbiologia , Cytisus/metabolismo , Germinação/genética , Doenças das Plantas/microbiologia , Proteômica , Agaricales/patogenicidade , Catalase/metabolismo , Análise por Conglomerados , Cicloexanos/metabolismo , Cytisus/microbiologia , Ácidos Graxos Insaturados/metabolismo , Proteínas Fúngicas/genética , Germinação/fisiologia , Policetídeo Sintases/metabolismo , Policetídeos/metabolismo , Metabolismo Secundário , Alinhamento de Sequência , Sesquiterpenos/metabolismo , Esporos Fúngicos/metabolismo , Fatores de Transcrição , Virulência
15.
J Theor Biol ; 412: 8-16, 2017 01 07.
Artigo em Inglês | MEDLINE | ID: mdl-27678162

RESUMO

Data obtained from ISSR amplification may readily be extracted but only allows us to know, for each gene, if a specific allele is present or not. From this partial information we provide a probabilistic method to reconstruct the pedigree corresponding to some families of diploid cultivars. This method consists in determining for each individual what is the most likely couple of parent pair amongst all older individuals, according to some probability measure. The construction of this measure bears on the fact that the probability to observe the specific alleles in the child, given the status of the parents does not depend on the generation and is the same for each gene. This assumption is then justified from a convergence result of gene frequencies which is proved here. Our reconstruction method is applied to a family of 85 living accessions representing the common broom Cytisus scoparius.


Assuntos
Alelos , Cytisus/genética , Modelos Genéticos
16.
Mol Genet Genomics ; 291(1): 181-91, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26243687

RESUMO

Paulownia witches' broom (PaWB) caused by the phytoplasma is a devastating disease of Paulownia trees. It has caused heavy yield losses to Paulownia production worldwide. However, knowledge of the transcriptional and post-transcriptional regulation of gene expression by microRNAs (miRNAs), especially miRNAs responsive to PaWB disease stress, is still rudimentary. In this study, to identify miRNAs and their transcript targets that are responsive to PaWB disease stress, six sequencing libraries were constructed from healthy (PF), PaWB-infected (PFI), and PaWB-infected, 20 mg L(-1) methyl methane sulfonate-treated (PFI20) P. fortunei seedlings. As a result, 95 conserved miRNAs belonging to 18 miRNA families, as well as 122 potential novel miRNAs, were identified. Most of them were found to be a response to PaWB disease-induced stress, and the expression levels of these miRNAs were validated by quantitative real-time PCR analysis. The study simultaneously identified 109 target genes from the P. fortunei for 14 conserved miRNA families and 24 novel miRNAs by degradome sequencing. Furthermore, the functions of the miRNA targets were annotated based on Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analysis. The results presented here provide the groundwork for further analysis of miRNAs and target genes responsive to the PaWB disease stress, and could be also useful for addressing new questions to better understand the mechanisms of plant infection by phytoplasma in the future.


Assuntos
Infecções Bacterianas/genética , Cytisus/genética , Regulação da Expressão Gênica de Plantas/genética , Magnoliopsida/genética , MicroRNAs/genética , Phytoplasma/genética , Doenças das Plantas/genética , Infecções Bacterianas/microbiologia , Cytisus/microbiologia , Genes de Plantas/genética , Magnoliopsida/microbiologia , Doenças das Plantas/microbiologia , Plântula/genética , Plântula/microbiologia , Transcriptoma/genética
17.
Mol Ecol ; 25(12): 2790-804, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27105397

RESUMO

Cytisus scoparius is a global invasive species that affects local flora and fauna at the intercontinental level. Its natural distribution spans across Europe, but seeds have also been moved among countries, mixing plants of native and non-native genetic origins. Hybridization between the introduced and native gene pool is likely to threaten both the native gene pool and the local flora. In this study, we address the potential threat of invasive C. scoparius to local gene pools in vulnerable heathlands. We used nuclear single nucleotide polymorphic (SNP) and simple sequence repeat (SSR) markers together with plastid SSR and indel markers to investigate the level and direction of gene flow between invasive and native heathland C. scoparius. Analyses of population structures confirmed the presence of two gene pools: one native and the other invasive. The nuclear genome of the native types was highly introgressed with the invasive genome, and we observed advanced-generation hybrids, suggesting that hybridization has been occurring for several generations. There is asymmetrical gene flow from the invasive to the native gene pool, which can be attributed to higher fecundity in the invasive individuals, measured by the number of flowers and seed pods. Strong spatial genetic structure in plastid markers and weaker structure in nuclear markers suggest that seeds spread over relatively short distances and that gene flow over longer distances is mainly facilitated by pollen dispersal. We further show that the growth habits of heathland plants become more vigorous with increased introgression from the invaders. Implications of the findings are discussed in relation to future management of invading C. scoparius.


Assuntos
Cytisus/genética , Pool Gênico , Hibridização Genética , Espécies Introduzidas , Conservação dos Recursos Naturais , DNA de Plantas/genética , Dinamarca , Ecossistema , Fluxo Gênico , Genética Populacional , Genoma de Planta , Repetições de Microssatélites , Modelos Genéticos , Pólen/genética , Polimorfismo de Nucleotídeo Único , Sementes/genética
18.
Bull Math Biol ; 78(7): 1337-79, 2016 07.
Artigo em Inglês | MEDLINE | ID: mdl-27417986

RESUMO

We study an integro-difference equation model that describes the spatial dynamics of a species in an expanding or contracting habitat. We give conditions under which the species disperses to a region of poor quality where the species eventually becomes extinct. We show that when the species persists in the habitat, the rightward and leftward spreading speeds are determined by c, the speed at which the habitat quality increases or decreases in time, as well as [Formula: see text], [Formula: see text], [Formula: see text], and [Formula: see text], which are formulated in terms of the dispersal kernel and species growth rates in both directions. We demonstrate that in the case that the species grows everywhere in space, the rightward spreading speed is [Formula: see text] if c is relatively small and is [Formula: see text] if c is large, and the leftward spreading speed is one of [Formula: see text], [Formula: see text], or [Formula: see text]. We also show that it is possible for a solution to form a two-layer wave, with the propagation speeds of the two layers analytically determined.


Assuntos
Ecossistema , Modelos Biológicos , Animais , Afídeos , Mudança Climática , Simulação por Computador , Cytisus , Espécies Introduzidas/estatística & dados numéricos , Lagartos , Conceitos Matemáticos , Mariposas , Dinâmica Populacional/estatística & dados numéricos , Especificidade da Espécie
19.
An Acad Bras Cienc ; 88(1): 149-54, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26871495

RESUMO

The occurrence of Scotch broom Cytisus scoparius (L.) Link (Fabaceae), is reported for the first time in Brazil. The species has been registered in the species-rich Campos Sulinos grasslands, in the Campos de Cima da Serra, and in the Serra do Sudeste. Naturalizing populations were frequently formed in natural habitats near to human settlements, where prevailing land uses and disturbances facilitate dispersal and establishment. The plant is an invasive species that has globally caused significant damage to biodiversity and economic losses. In Brazil, the species has a strong potential for spreading into a wide range of ecosystems. The Atlantic Forest biome and part of the Pampa biome, together known as the Campos Sulinos, represent optimal areas for the species. Features of the observed populations and recommendations for management are presented.


Assuntos
Cytisus/crescimento & desenvolvimento , Espécies Introduzidas , Brasil , Cytisus/classificação , Florestas
20.
Int J Phytoremediation ; 18(4): 378-86, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26555402

RESUMO

A phytoremediation process with horse manure, plants (Populus alba, Cytisus scoparius, Paulownia tomentosa) and naturally growing vegetation was carried out at a real-scale in order to phytoremediate and functionally recover a soil contaminated by metals (Zn, Pb, Cd, Ni, Cu, Cr), hydrocarbons (TPH) and polychlorobiphenyls (PCB). All the plants were effective in two years in the reclamation of the polluted soil, showing an average reduction of about 35%, 40%, and 70% in metals, TPH and PCB content, respectively. As regards the plants, the poplar contributed the most to organic removal. In fact, its ability to take up and detoxify organic pollutants is well known. Paulownia tomentosa, instead, showed high metal removal. The Cytisus scoparius was the least effective plant in soil decontamination. The recovery of soil functionality was followed by enzyme activities, expressing the biochemical processes underway, and nutrient content useful for plant growth and development. Throughout the area, an enhancement of metabolic processes and soil chemical quality was observed. All the enzymatic activities showed a general increase over time (until 3-4 fold than the initial value for urease and ß-glucosidase). Moreover, Cytisus scoparius, even though it showed a lower decontamination capability, was the most effective in soil metabolic stimulation.


Assuntos
Cytisus/metabolismo , Recuperação e Remediação Ambiental/métodos , Lamiales/metabolismo , Populus/metabolismo , Poluentes do Solo/metabolismo , Biodegradação Ambiental , Cytisus/química , Recuperação e Remediação Ambiental/instrumentação , Hidrocarbonetos/análise , Hidrocarbonetos/metabolismo , Lamiales/química , Esterco/análise , Metais Pesados/análise , Metais Pesados/metabolismo , Populus/química , Poluentes do Solo/análise
SELEÇÃO DE REFERÊNCIAS
Detalhe da pesquisa