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1.
Acta Microbiol Immunol Hung ; 71(3): 242-247, 2024 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-39186382

RESUMO

Delftia acidovorans is an aerobic, non-fermenting Gram-negative bacterium (NFGNB), found in soil, water and hospital environments. It is rarely clinically significant, most commonly affecting hospitalized or immunocompromised patients. The present study aimed to explore the genomic characteristics of a Bulgarian clinical D. acidovorans isolate (designated Dac759) in comparison to all strains of this species with available genomes in the NCBI Genome database (n = 34). Dac759 was obtained in 2021 from the sputum of a 65-year-old female immunocompetent outpatient with bronchitis. Species identification using MALDI-TOF mass spectrometry, antimicrobial susceptibility testing, whole-genome sequencing (WGS), and phylogenomic analysis were performed. The isolate demonstrated high-level resistance to colistin (16 mg L-1); resistance to gentamicin; reduced susceptibility to piperacillin, piperacillin-tazobactam, ceftazidime, cefepime, ciprofloxacin, and levofloxacin; and susceptibility to imipenem, meropenem, amikacin, and tobramycin. The observed genome size (6.43 Mb) and GC content (66.76%) were comparable with the accessible data from sequenced D. acidovorans genomes. A limited number of resistance determinants were identified in the assembled genome as follows: blaOXA-459, emrE, oqxB, and mexCD-oprJ. The phylogenomic analysis indicated a high heterogenicity of the included D. acidovorans genomes. In conclusion, to the best of our knowledge, this is the first documented case of a clinically relevant D. acidovorans isolate in Bulgaria. Unlike the majority of reports in the literature, Dac759 affected a patient with no malignancies or other preexisting comorbidities. With this in mind, its genome sequence is a valuable resource for the fundamental study of uncommon bacterial pathogens of public health importance.


Assuntos
Antibacterianos , Bronquite , Delftia acidovorans , Genoma Bacteriano , Testes de Sensibilidade Microbiana , Filogenia , Sequenciamento Completo do Genoma , Humanos , Feminino , Idoso , Bulgária , Antibacterianos/farmacologia , Delftia acidovorans/genética , Delftia acidovorans/isolamento & purificação , Bronquite/microbiologia , Bronquite/tratamento farmacológico , Pacientes Ambulatoriais , Infecções por Bactérias Gram-Negativas/microbiologia
2.
Biochem Genet ; 61(3): 1086-1096, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36451050

RESUMO

BACKGROUND: Delftia acidovorans is distributed widely in the environment and has the potential to promote the growth of plants and degrade organic pollutants. However, it is also an opportunistic pathogen for human and many reports demonstrated that D. acidovorans has strong resistance to aminoglycosides and polymyxins. OBJECTIVE: The aim of this work was to reveal the antibiotic resistance genes and pathogenic genes in a novel conditional pathogenic strain-D. acidovorans B804, which was isolated from the radiation-polluted soil from Xinjiang Uyghur Autonomous Region, China. METHODS: The antibiotic resistance test was performed according to the Kirby-Bauer disk diffusion method and evaluated by the standards of the Clinical and Laboratory Standards Institute guidelines. The genome of D. acidovorans B804 was sequenced by a PacBio RS II and Illumina HiSeq 4000 platform in Shanghai Majorbio Biopharm Technology Co., Ltd. (Shanghai, China). RESULTS: The multidrug resistance phenotypes of D. acidovorans B804 was experimentally confirmed and its genome was sequenced. The total size of D. acidovorans B804 genome was 6,661,314 bp with a GC content of 66.73%. 403 genes associated with antibiotic resistances were predicted. Meanwhile, 89 pathogenic genes were also predicted and 17 of these genes might be capable of causing diseases to human, such as infections and salmonellosis. CONCLUSIONS: This genomic information can be used as a reference sequence for comparative genomic studies. The results provided more insights regarding the pathogenesis and drug resistance mechanism of D. acidovorans, which will be meaningful for developing more effective therapies toward D. acidovorans-related diseases.


Assuntos
Delftia acidovorans , Humanos , Delftia acidovorans/genética , Delftia acidovorans/metabolismo , China , Antibacterianos/farmacologia , Antibacterianos/metabolismo , Sequenciamento Completo do Genoma , Sequência de Bases
3.
Biochem Biophys Res Commun ; 588: 104-110, 2022 01 15.
Artigo em Inglês | MEDLINE | ID: mdl-34953206

RESUMO

Many species of bacteria interact on the human skin to form a certain microbiome. Delftia acidovorans, a bacterium detected from human skin, inhibits the growth of S. epidermidis, a dominant bacterium of the human skin microbiota. Here, we show that ammonia secreted by D. acidovorans inhibits the growth of S. epidermidis by increasing the pH value of the medium. The pH value of D. acidovorans culture supernatant (CS) was higher than that of the medium without culture. The inhibitory activity of the D. acidovorans CS against the growth of S. epidermidis was decreased by neutralization with hydrochloric acid. Genes encoding enzymes related to ammonia production were found in the D. acidovorans genome. Moreover, the D. acidovorans CS contained a high concentration of ammonia. The addition of ammonia to S. epidermidis culture led to an increase in the reactive oxygen species (ROS) production and inhibited S. epidermidis growth. The addition of sodium hydroxide also led to an increase in the ROS production and inhibited S. epidermidis growth. The inhibitory activity of ammonia and sodium hydroxide against S. epidermidis growth was suppressed by malonic acid, an inhibitor of succinate dehydrogenase in the tricarboxylic acid (TCA) cycle, and N-acetyl-l-cysteine, a free radical scavenger. These findings suggest that D. acidovorans secretes ammonia and alkaline stress inhibits the growth of S. epidermidis by inducing TCA cycle-triggered ROS production.


Assuntos
Álcalis/toxicidade , Ciclo do Ácido Cítrico , Espécies Reativas de Oxigênio/metabolismo , Staphylococcus epidermidis/crescimento & desenvolvimento , Estresse Fisiológico , Amônia/farmacologia , Delftia acidovorans/fisiologia , Sequestradores de Radicais Livres/farmacologia , Concentração de Íons de Hidrogênio , Hidróxido de Sódio/farmacologia , Staphylococcus aureus/efeitos dos fármacos , Staphylococcus aureus/fisiologia , Estresse Fisiológico/efeitos dos fármacos
4.
Biofouling ; 36(1): 32-43, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31973583

RESUMO

Corneal infection is a devastating sight-threatening complication that is associated with contact lens (CL) wear, commonly caused by Pseudomonas aeruginosa. Lately, Achromobacter xylosoxidans, Delftia acidovorans, and Stenotrophomonas maltophilia have been associated with corneal infection. This study investigated the adhesion of these emerging pathogens to CLs, under the influence of an artificial tear solution (ATS) containing a variety of components commonly found in human tears. Two different CL materials, etafilcon A and senofilcon A, either soaked in an ATS or phosphate buffered saline, were exposed to the bacteria. Bacterial adhesion was investigated using a radio-labeling technique (total counts) and plate count method (viable counts). The findings from this study revealed that in addition to P. aeruginosa, among the emerging pathogens evaluated, A. xylosoxidans showed an increased propensity for adherence to both CL materials and S. maltophilia showed lower viability. ATS influenced the viable counts more than the total counts on CLs.


Assuntos
Achromobacter denitrificans/efeitos dos fármacos , Aderência Bacteriana/efeitos dos fármacos , Lentes de Contato/microbiologia , Delftia acidovorans/efeitos dos fármacos , Lubrificantes Oftálmicos/farmacologia , Pseudomonas aeruginosa/efeitos dos fármacos , Stenotrophomonas maltophilia/efeitos dos fármacos , Humanos , Viabilidade Microbiana/efeitos dos fármacos
5.
Proc Biol Sci ; 286(1903): 20190211, 2019 05 29.
Artigo em Inglês | MEDLINE | ID: mdl-31113327

RESUMO

It is increasingly clear that microbial plant symbionts can influence interactions between their plant hosts and other organisms. However, such effects remain poorly understood, particularly under ecologically realistic conditions where plants simultaneously interact with diverse mutualists and antagonists. Here, we examine how the effects of a plant virus on indirect plant defences against its insect vector are influenced by co-occurrence of other microbial plant symbionts. Using a multi-factorial design, we manipulated colonization of soya bean using three different microbes: a pathogenic plant virus (bean pod mottle virus (BPMV)), a nodule-forming beneficial rhizobacterium ( Bradyrhizobium japonicum) and a plant growth-promoting rhizobacterium ( Delftia acidovorans). We then assessed recruitment of parasitoids ( Pediobious foveolatus (Eulophidae)) and parasitism rates following feeding by the BPMV vector Epilachna varivestis (Coccinellidae). BPMV infection suppressed parasitoid recruitment, prolonged parasitoid foraging time and reduced parasitism rates in semi-natural foraging assays. However, simultaneous colonization of BPMV-infected hosts by both rhizobacteria restored parasitoid recruitment and rates of parasitism to levels similar to uninfected controls. Co-colonization by the two rhizobacteria also enhanced parasitoid recruitment in the absence of BPMV infection. These results illustrate the potential of plant-associated microbes to influence indirect plant defences, with implications for disease transmission and herbivory, but also highlight the potential complexity of such interactions.


Assuntos
Bradyrhizobium/fisiologia , Comovirus/fisiologia , Delftia acidovorans/fisiologia , Glycine max/fisiologia , Imunidade Vegetal , Simbiose , Glycine max/imunologia , Glycine max/microbiologia
6.
Biochemistry ; 57(39): 5715-5725, 2018 10 02.
Artigo em Inglês | MEDLINE | ID: mdl-30199631

RESUMO

The enzyme 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) reductase (HMGR) catalyzes the first committed step of the mevalonate pathway, which is used across biology in the biosynthesis of countless metabolites. HMGR consumes 2 equiv of the cofactor NAD(P)H to perform the four-electron reduction of HMG-CoA to mevalonate toward the production of steroids and isoprenoids, the largest class of natural products. Recent structural data have shown that HMGR contains a highly mobile C-terminal domain (CTD) that is believed to adopt many different conformations to permit binding and dissociation of the substrate, cofactors, and products at specific points during the reaction cycle. Here, we have characterized the HMGR from Delftia acidovorans as an NADH-specific enzyme and determined crystal structures of the enzyme in unbound, mevalonate-bound, and NADH- and citrate-bound states. Together, these structures depict ligand binding in both the active site and the cofactor-binding site while illustrating how a conserved helical motif confers NAD(P)H cofactor specificity. Unexpectedly, the NADH-bound structure also reveals a new conformation of the CTD, in which the domain has "flipped" upside-down, while directly binding the cofactor. By capturing these structural snapshots, this work not only expands the known range of HMGR domain movement but also provides valuable insight into the catalytic mechanism of this biologically important enzyme.


Assuntos
Hidroximetilglutaril-CoA Redutases NAD-Dependentes/química , Domínios Proteicos , Domínio Catalítico , Ácido Cítrico/metabolismo , Cristalografia por Raios X , Delftia acidovorans/enzimologia , Hidroximetilglutaril-CoA Redutases NAD-Dependentes/isolamento & purificação , Hidroximetilglutaril-CoA Redutases NAD-Dependentes/metabolismo , Cinética , NAD/metabolismo , Maleabilidade , Ligação Proteica , Conformação Proteica
7.
Biometals ; 31(1): 1-5, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29302860

RESUMO

Metal ions are known selective agents for antibiotic resistance and frequently accumulate in natural environments due to the anthropogenic activities. However, the action of metals that cause the antibiotic resistance is not known for all bacteria. The present work is aimed to investigate the co-selection of metals and antibiotic resistance in Comamonas acidovorans. Tolerance profile of 16 metals revealed that the strain could tolerate high concentrations of toxic metals i.e., Cr (710 ppm), As (380 ppm), Cd (320 ppm), Pb (305 ppm) and Hg (205 ppm). Additionally, metal tolerant phenotypes were subjected to antibiotic resistance profiling; wherein several metal tolerant phenotypes (Cr 1.35-fold; Co-1.33 fold; Mn-1.29 fold) were resistant, while other metal tolerant phenotypes (Mg 1.32-fold; Hg 1.29-fold; Cu 1.28-fold) were susceptible than control phenotype. Metal accumulation may alter the metabolism of C. acidovorans that activates or inactivates the genes responsible for antibiotic resistance, resulting in the resistance and/or susceptibility pattern observed in metal resistant phenotypes.


Assuntos
Arsênio/toxicidade , Cádmio/toxicidade , Cromo/toxicidade , Delftia acidovorans/efeitos dos fármacos , Chumbo/toxicidade , Mercúrio/toxicidade , Antibacterianos/farmacologia , Delftia acidovorans/crescimento & desenvolvimento , Delftia acidovorans/metabolismo , Interações Medicamentosas , Farmacorresistência Bacteriana , Tolerância a Medicamentos , Testes de Sensibilidade Microbiana , Estreptomicina/farmacologia , Tetraciclina/farmacologia , beta-Lactamas/farmacologia
8.
Eye Contact Lens ; 44 Suppl 2: S120-S126, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28953600

RESUMO

PURPOSE: Contact lens cases become contaminated with microbes during use. We wished to compare the adhesion of uncommon bacterial contaminants isolated from lens cases to contact lenses with and without organic soil. METHODS: Strains of Delftia acidovorans (001), Stenotrophomonas maltophilia (002 and 006), and Achromobacter xylosoxidans (001) isolated from contact lens cases (test strains) and Pseudomonas aeruginosa (Paer1) isolated from eyes at the time of infiltrative response (control strain) were used. Bacteria were grown and resuspended in phosphate-buffered saline (PBS) or 10% organic soil (heat-killed Saccharomyces cerevisiae resuspended in complement inactivated bovine serum). Two silicone hydrogel (senofilcon A and comfilcon A) and one hydrogel lens (etafilcon A) lens materials were used. Bacteria (1.0×10 and 1.0×10 colony-forming units/mL; CFU/mL) adhered to lenses for 24 hr and the numbers of bacteria adherent to each lens type (with and without organic soil) were estimated by culture. RESULTS: All the four test strains adhered in significantly greater numbers to contact lenses after incubation in inoculum prepared with organic soil compared with PBS-D. acidovorans 001 (0.7 log10 CFU; P<0.05), S. maltophilia 002 (1.7 log10 CFU; P<0.05), S. maltophilia 006 (0.9 log10 CFU; P<0.05), and A. xylosoxidans 001 (0.4 log10 CFU; P<0.05). However, the presence of organic soil did not increase adhesion of P. aeruginosa Paer1 (-0.1 log10 CFU; P>0.05). Achromobacter xylosoxidans 001 (P<0.01), D. acidovorans 001 (P<0.01), and S. maltophilia 002 (P<0.01) significantly differed in their adhesion to the three contact lens materials. CONCLUSION: Bacteria that are commonly found in contact lens cases adhered to contact lenses in relatively high numbers in the presence of organic soil. This might indicate that a similar phenomenon occurs in the presence of tears. This may facilitate their transfer from the lens to the cornea and the production of corneal infiltrates.


Assuntos
Achromobacter denitrificans/fisiologia , Aderência Bacteriana/fisiologia , Lentes de Contato Hidrofílicas/microbiologia , Delftia acidovorans/fisiologia , Stenotrophomonas maltophilia/fisiologia , Humanos , Microbiologia do Solo
9.
J Microsc ; 265(1): 3-10, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27519057

RESUMO

Bacterial biofilms play key roles in environmental and biomedical processes, and understanding their activities requires comprehension of their nanoarchitectural characteristics. Electron microscopy (EM) is an essential tool for nanostructural analysis, but conventional EM methods are limited in that they either provide topographical information alone, or are suitable for imaging only relatively thin (<300 nm) sample volumes. For biofilm investigations, these are significant restrictions. Understanding structural relations between cells requires imaging of a sample volume sufficiently large to encompass multiple cells and the capture of both external and internal details of cell structure. An emerging EM technique with such capabilities is bright-field scanning transmission electron microscopy (BF-STEM) and in the present report BF-STEM was coupled with tomography to elucidate nanostructure in biofilms formed by the polycyclic aromatic hydrocarbon-degrading soil bacterium, Delftia acidovorans Cs1-4. Dual-axis BF-STEM enabled high-resolution 3-D tomographic recontructions (6-10 nm) visualization of thick (1250 and 1500 nm) sections. The 3-D data revealed that novel extracellular structures, termed nanopods, were polymorphic and formed complex networks within cell clusters. BF-STEM tomography enabled visualization of conduits formed by nanopods that could enable intercellular movement of outer membrane vesicles, and thereby enable direct communication between cells. This report is the first to document application of dual-axis BF-STEM tomography to obtain high-resolution 3-D images of novel nanostructures in bacterial biofilms. Future work with dual-axis BF-STEM tomography combined with correlative light electron microscopy may provide deeper insights into physiological functions associated with nanopods as well as other nanostructures.


Assuntos
Biofilmes/crescimento & desenvolvimento , Delftia acidovorans/crescimento & desenvolvimento , Imageamento Tridimensional/métodos , Microscopia Eletrônica de Transmissão e Varredura/métodos , Nanoestruturas
10.
Pol J Microbiol ; 66(3): 321-326, 2017 Sep 27.
Artigo em Inglês | MEDLINE | ID: mdl-29319524

RESUMO

Delftia acidovorans MTCC 3363 was found to convert 16-dehydropregnenolone acetate (16-DPA) exclusively to 4-androstene-3, 17-dione (AD). Addition of 9α-hydroxylase inhibitors was not required for preventing the accumulation of byproducts. The effect of pH, temperature, substrate concentration, surfactants and carrier solvents on this bioconversion has been studied. 16-DPA was maximally converted in buffered medium at pH 7.0, at temperature 30°C and 0.5 mg ml-1 substrate concentration. Detergent addition and temperature above 35°C had deleterious effect on bioconversion. Dioxan was found to be the best carrier solvent for biotransformation of 16-DPA to AD.


Assuntos
Androstenodiona/metabolismo , Delftia acidovorans/metabolismo , Pregnenolona/análogos & derivados , Biotransformação/fisiologia , Pregnenolona/metabolismo , Microbiologia do Solo
11.
Biochemistry ; 54(23): 3604-16, 2015 Jun 16.
Artigo em Inglês | MEDLINE | ID: mdl-25996254

RESUMO

L-Tryptophan 2,3-dioxygenase (TDO) is a protoheme-containing enzyme that catalyzes the production of N-formylkynurenine by inserting O2 into the pyrrole ring of L-tryptophan. Although a ferrous-oxy form (Fe²âº-O2) has been established to be an obligate intermediate in the reaction, details of the ring opening reaction remain elusive. In this study, the O2 insertion reaction catalyzed by Pseudomonas TDO (PaTDO) was examined using a heme-modification approach, which allowed us to draw a quantitative correlation between the inductive electronic effects of the heme substituents and the substituent-induced changes in the functional behaviors of the ferrous-oxy form. We succeeded in preparing reconstituted PaTDO with synthetic hemes, which were different with respect to the inductive electron-withdrawing nature of the heme substituents at positions 2 and 4. An increase in the electron-withdrawing power of the heme substituents elevated the redox potential of reconstituted PaTDO, showing that the stronger the electron-withdrawing ability of the heme substituents, the lower the electron density on the heme iron. The decrease in the electron density of the heme iron resulted in a higher frequency shift of the C-O stretch of the heme-bound CO and enhanced the dissociation of O2 from the ferrous-oxy intermediate. This result was interpreted as being due to weaker π back-donation from the heme iron to the bound CO or O2. More importantly, the reaction rates of the ferrous-oxy intermediate to oxidize L-Trp were increased with the electron-withdrawing ability of the heme substituents, implying that the more electron-deficient ferrous-oxy heme is favored for the PaTDO-catalyzed oxygenation. On the basis of these results, we propose that the initial step of the dioxygen activation by PaTDO is a direct electrophilic addition of the heme-bound O2 to the indole ring of L-Trp.


Assuntos
Proteínas de Bactérias/metabolismo , Heme/metabolismo , Cinurenina/análogos & derivados , Modelos Moleculares , Oxigênio/metabolismo , Triptofano Oxigenase/metabolismo , Triptofano/metabolismo , Acetilação , Animais , Proteínas de Bactérias/química , Biocatálise , Cânfora 5-Mono-Oxigenase/química , Cânfora 5-Mono-Oxigenase/metabolismo , Dióxido de Carbono/química , Dióxido de Carbono/metabolismo , Delftia acidovorans/enzimologia , Deuteroporfirinas/química , Deuteroporfirinas/metabolismo , Heme/análogos & derivados , Heme/química , Cinurenina/química , Cinurenina/metabolismo , Ligantes , Mesoporfirinas/química , Mesoporfirinas/metabolismo , Mioglobina/química , Mioglobina/metabolismo , Oxirredução , Oxigênio/química , Triptofano/química , Triptofano Oxigenase/química
12.
Nat Chem Biol ; 9(4): 241-3, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23377039

RESUMO

Microorganisms produce and secrete secondary metabolites to assist in their survival. We report that the gold resident bacterium Delftia acidovorans produces a secondary metabolite that protects from soluble gold through the generation of solid gold forms. This finding is the first demonstration that a secreted metabolite can protect against toxic gold and cause gold biomineralization.


Assuntos
Proteínas de Bactérias/metabolismo , Complexos de Coordenação/metabolismo , Delftia acidovorans/metabolismo , Ouro/metabolismo , Nanopartículas Metálicas/química , Peptídeos/metabolismo , Proteínas de Bactérias/genética , Complexos de Coordenação/química , Cupriavidus/genética , Cupriavidus/metabolismo , Delftia acidovorans/genética , Espectroscopia de Ressonância Magnética , Peptídeos/genética , Solubilidade
13.
Antimicrob Agents Chemother ; 58(10): 5673-86, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25022584

RESUMO

The physicochemical responses of Delftia acidovorans biofilms exposed to the commonly used antimicrobial chlorhexidine (CHX) were examined in this study. A CHX-sensitive mutant (MIC, 1.0 µg ml(-1)) was derived from a CHX-tolerant (MIC, 15.0 µg ml(-1)) D. acidovorans parent strain using transposon mutagenesis. D. acidovorans mutant (MT51) and wild-type (WT15) strain biofilms were cultivated in flow cells and then treated with CHX at sub-MIC and inhibitory concentrations and examined by confocal laser scanning microscopy (CLSM), scanning transmission X-ray microscopy (STXM), and infrared (IR) spectroscopy. Specific morphological, structural, and chemical compositional differences between the CHX-treated and -untreated biofilms of both strains were observed. Apart from architectural differences, CLSM revealed a negative effect of CHX on biofilm thickness in the CHX-sensitive MT51 biofilms relative to those of the WT15 strain. STXM analyses showed that the WT15 biofilms contained two morphochemical cell variants, whereas only one type was detected in the MT51 biofilms. The cells in the MT51 biofilms bioaccumulated CHX to a similar extent as one of the cell types found in the WT15 biofilms, whereas the other cell type in the WT15 biofilms did not bioaccumulate CHX. STXM and IR spectral analyses revealed that CHX-sensitive MT51 cells accumulated the highest levels of CHX. Pretreating biofilms with EDTA promoted the accumulation of CHX in all cells. Thus, it is suggested that a subpopulation of cells that do not accumulate CHX appear to be responsible for greater CHX resistance in D. acidovorans WT15 biofilm in conjunction with the possible involvement of bacterial membrane stability.


Assuntos
Anti-Infecciosos/farmacologia , Biofilmes/efeitos dos fármacos , Clorexidina/farmacologia , Delftia acidovorans/efeitos dos fármacos , Delftia acidovorans/crescimento & desenvolvimento , Microscopia Confocal
14.
Biodegradation ; 25(4): 595-604, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24519176

RESUMO

Delftia acidovorans MC1071 can productively degrade R-2-(2,4-dichlorophenoxy)propionate (R-2,4-DP) but not 2,4-dichlorophenoxyacetate (2,4-D) herbicides. This work demonstrates adaptation of MC1071 to degrade 2,4-D in a model two-dimensional porous medium (referred to here as a micromodel). Adaptation for 2,4-D degradation in the 2 cm-long micromodel occurred within 35 days of exposure to 2,4-D, as documented by substrate removal. The amount of 2,4-D degradation in the adapted cultures in two replicate micromodels (~10 and 20 % over 142 days) was higher than a theoretical maximum (4 %) predicted using published numerical simulation methods, assuming instantaneous biodegradation and a transverse dispersion coefficient obtained for the same pore structure without biomass present. This suggests that the presence of biomass enhances substrate mixing. Additional evidence for adaptation was provided by operation without R-2,4-DP, where degradation of 2,4-D slowly decreased over 20 days, but was restored almost immediately when R-2,4-DP was again provided. Compared to suspended growth systems, the micromodel system retained the ability to degrade 2,4-D longer in the absence of R-2,4-DP, suggesting slower responses and greater resilience to fluctuations in substrates might be expected in the soil environment than in a chemostat.


Assuntos
Ácido 2,4-Diclorofenoxiacético/metabolismo , Adaptação Fisiológica , Delftia acidovorans/metabolismo , Microfluídica , Ácido 2,4-Diclorofenoxiacético/química , Técnicas de Cultura Celular por Lotes , Biodegradação Ambiental , Herbicidas/metabolismo , Porosidade , Especificidade por Substrato
15.
Anal Bioanal Chem ; 405(9): 2825-31, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23377114

RESUMO

Assessing the environmental fate of chiral micropollutants such as herbicides is challenging. The complexity of aquatic systems often makes it difficult to obtain hydraulic mass balances, which is a prerequisite when assessing degradation based on concentration data. Elegant alternatives are concentration-independent approaches like compound-specific isotope analysis or enantiospecific concentration analysis. Both detect degradation-induced changes from ratios of molecular species, either isotopologues or enantiomers. A combination of both-enantioselective stable isotope analysis (ESIA)-provides information on (13)C/(12)C ratios for each enantiomer separately. Recently, Badea et al. demonstrated for the first time ESIA for the insecticide α-hexachlorocyclohexane. The present study enlarges the applicability of ESIA to polar herbicides such as phenoxy acids: 4-CPP ((RS)-2-(4-chlorophenoxy)-propionic acid), mecoprop (2-(4-chloro-2-methylphenoxy)-propionic acid), and dichlorprop (2-(2,4-dichlorophenoxy)-propionic acid). Enantioselective gas chromatography-isotope ratio mass spectrometry was accomplished with derivatization prior to analysis. Precise carbon isotope analysis (2σ ≤ 0.5‰) was obtained with ≥7 ng C on column. Microbial degradation of dichlorprop, 2-(2,4-dichlorophenoxy)-propionic acid by Delftia acidovorans MC1 showed pronounced enantiomer fractionation, but no isotope fractionation. In contrast, Badea et al. observed isotope fractionation, but no enantiomeric fractionation. Hence, the two lines of evidence appear to complement each other. They may provide enhanced insight when combined as ESIA.


Assuntos
Ácido 2,4-Diclorofenoxiacético/análogos & derivados , Ácido 2-Metil-4-clorofenoxiacético/análogos & derivados , Isótopos de Carbono/análise , Catecóis/análise , Cromatografia Gasosa-Espectrometria de Massas/métodos , Herbicidas/análise , Propionatos/análise , Ácido 2,4-Diclorofenoxiacético/análise , Ácido 2,4-Diclorofenoxiacético/metabolismo , Ácido 2-Metil-4-clorofenoxiacético/análise , Biodegradação Ambiental , Boranos/química , Isótopos de Carbono/metabolismo , Delftia acidovorans/metabolismo , Herbicidas/metabolismo , Estereoisomerismo
16.
Appl Microbiol Biotechnol ; 97(11): 4821-9, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23474615

RESUMO

A polyhydroxyalkanoate (PHA) was enzymatically synthesized in vitro, and the end structure of PHA associated with a chain transfer (CT) reaction was investigated. In the CT reaction, PHA chain transfers from PHA synthase (PhaC) to a CT agent, resulting in covalent bonding of CT agent to the PHA chain at its carboxyl end. In vitro CT reaction has never been demonstrated because of relatively low yields of in vitro synthesized poly[(R)-3-hydroxybutyrate)] (P(3HB)), which makes it difficult to characterize the end structures of the polymers by nuclear magnetic resonance (NMR). To overcome these difficulties, a novel in vitro synthesis method that produced relatively larger amounts of P(3HB) was developed by employing PhaCDa from Delftia acidovorans and two enantioselective enoyl-coenzyme A (CoA) hydratases which were R-hydratase (PhaJAc) from Aeromonas caviae and S-hydratase (FadB1x) from Pseudomonas putida KT2440 with ß-butyrolactone and CoA as starting materials. Using this method, P(3HB) synthesis was performed with tetraethylene glycols (TEGs) as a discriminable CT agent, and the resultant P(3HB) was characterized by (1)H-NMR. NMR analysis revealed that the carboxylic end of P(3HB) was covalently linked to TEGs, providing the first direct evidence of in vitro CT reaction.


Assuntos
Aciltransferases/metabolismo , Aeromonas caviae/enzimologia , Delftia acidovorans/enzimologia , Enoil-CoA Hidratase/metabolismo , Polietilenoglicóis/metabolismo , Poli-Hidroxialcanoatos/metabolismo , Pseudomonas putida/enzimologia , Aciltransferases/isolamento & purificação , Enoil-CoA Hidratase/isolamento & purificação , Polimerização
17.
J Infect Chemother ; 19(2): 338-41, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22992836

RESUMO

A 46-year-old woman was transferred to our emergency unit because of impaired consciousness and respiratory failure with the history of excessive pesticide intake. The patient was hypersalivative and had bilateral pupillary miosis. Laboratory results showed markedly decreased cholinesterase. She was intubated and treated in the intensive care unit with the diagnosis of organophosphorus poisoning. The patient had persisted diarrhea, with a high fever and stomach tenderness on day 10. Whole-body contrast enhanced computed tomography revealed a swollen, enhanced small intestinal wall, and blood culture identified Delftia acidovorans. She was diagnosed as D. acidovorans bacteremia, probably caused by bacterial translocation based on the clinical presentation and the exclusion of other sources, and treated well with a total of 8 days of antibiotic therapy. So far as we know, this is the first case of D. acidovorans bacteremia that was presumably caused by bacterial translocation after organophosphorus poisoning in an immunocompetent adult patient.


Assuntos
Bacteriemia/microbiologia , Delftia acidovorans/fisiologia , Infecções por Bactérias Gram-Negativas/microbiologia , Intoxicação por Organofosfatos , Antibacterianos/uso terapêutico , Atropina/uso terapêutico , Translocação Bacteriana , Delftia acidovorans/efeitos dos fármacos , Delftia acidovorans/isolamento & purificação , Feminino , Humanos , Testes de Sensibilidade Microbiana , Pessoa de Meia-Idade , Antagonistas Muscarínicos/uso terapêutico
18.
Proc Natl Acad Sci U S A ; 107(47): 20240-5, 2010 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-21059954

RESUMO

Engineered glyphosate resistance is the most widely adopted genetically modified trait in agriculture, gaining widespread acceptance by providing a simple robust weed control system. However, extensive and sustained use of glyphosate as a sole weed control mechanism has led to field selection for glyphosate-resistant weeds and has induced significant population shifts to weeds with inherent tolerance to glyphosate. Additional weed control mechanisms that can complement glyphosate-resistant crops are, therefore, urgently needed. 2,4-dichlorophenoxyacetic acid (2,4-D) is an effective low-cost, broad-spectrum herbicide that controls many of the weeds developing resistance to glyphosate. We investigated the substrate preferences of bacterial aryloxyalkanoate dioxygenase enzymes (AADs) that can effectively degrade 2,4-D and have found that some members of this class can act on other widely used herbicides in addition to their activity on 2,4-D. AAD-1 cleaves the aryloxyphenoxypropionate family of grass-active herbicides, and AAD-12 acts on pyridyloxyacetate auxin herbicides such as triclopyr and fluroxypyr. Maize plants transformed with an AAD-1 gene showed robust crop resistance to aryloxyphenoxypropionate herbicides over four generations and were also not injured by 2,4-D applications at any growth stage. Arabidopsis plants expressing AAD-12 were resistant to 2,4-D as well as triclopyr and fluroxypyr, and transgenic soybean plants expressing AAD-12 maintained field resistance to 2,4-D over five generations. These results show that single AAD transgenes can provide simultaneous resistance to a broad repertoire of agronomically important classes of herbicides, including 2,4-D, with utility in both monocot and dicot crops. These transgenes can help preserve the productivity and environmental benefits of herbicide-resistant crops.


Assuntos
Ácido 2,4-Diclorofenoxiacético/metabolismo , Arabidopsis/genética , Cupriavidus necator/enzimologia , Dioxigenases/genética , Resistência a Herbicidas/genética , Herbicidas/toxicidade , Zea mays/genética , Ácido 2,4-Diclorofenoxiacético/toxicidade , Southern Blotting , Western Blotting , Cupriavidus necator/genética , Delftia acidovorans/enzimologia , Dioxigenases/metabolismo , Ensaio de Imunoadsorção Enzimática , Escherichia coli , Engenharia Genética , Glicina/análogos & derivados , Glicina/toxicidade , Cinética , Estrutura Molecular , Sphingomonadaceae/enzimologia , Especificidade por Substrato , Transformação Genética/genética , Transgenes/genética , Glifosato
19.
J Fish Dis ; 36(7): 647-56, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23297744

RESUMO

Inspections by customs agents at Barcelona airport discovered 420 kg of contraband glass eels prepared for shipment to Hong Kong. After confiscation of these animals by police, they were transported to holding facilities to be maintained until after a judicial hearing. Upon arrival, they were separated into two groups and held under ambient flow-through conditions in fresh water. During their captivity period, several peaks in mortality occurred and multiple bacterial strains were isolated from moribund animals. Sequencing of 16S rDNA was used to determine specific identity of the isolates. An initial isolation of Pseudomonas anguilliseptica was treated with oxytetracycline. A subsequent isolation of Delftia acidovorans proved resistant to oxytetracycline and was treated with gentamicin in combination with sulphadiazine-trimethoprim. Once the health condition of the animals was stabilized, they were partitioned into groups and subsequently released as part of a restocking effort for the species following the guidelines of Regulation (EC) 1100/2007 (Anon 2007). This represents the first record for both bacterial species in the host Anguilla anguilla in the Spanish Mediterranean.


Assuntos
Anguilla , Antibacterianos/farmacologia , Coinfecção/veterinária , Delftia acidovorans/fisiologia , Doenças dos Peixes/microbiologia , Infecções por Bactérias Gram-Negativas/veterinária , Pseudomonas/fisiologia , Animais , Coinfecção/epidemiologia , Coinfecção/microbiologia , Comércio , Conservação dos Recursos Naturais , DNA Bacteriano/genética , DNA Bacteriano/metabolismo , Delftia acidovorans/efeitos dos fármacos , Delftia acidovorans/genética , Delftia acidovorans/isolamento & purificação , Doenças dos Peixes/epidemiologia , Infecções por Bactérias Gram-Negativas/epidemiologia , Infecções por Bactérias Gram-Negativas/microbiologia , Dados de Sequência Molecular , Pseudomonas/efeitos dos fármacos , Pseudomonas/genética , Pseudomonas/isolamento & purificação , Infecções por Pseudomonas/epidemiologia , Infecções por Pseudomonas/microbiologia , Infecções por Pseudomonas/veterinária , RNA Ribossômico 16S/genética , RNA Ribossômico 16S/metabolismo , Espanha
20.
Eye Contact Lens ; 39(2): 192-3, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22223162

RESUMO

OBJECTIVE: To report an unusual case of keratitis in a cosmetic contact lens wearer caused by two rare organisms. METHOD: Case report. RESULTS: A 14-year-old cosmetic contact lens user presented with a paracentral corneal ulcer in her right eye. The cosmetic lenses were bought online. The cultures from corneal scrapings and contact lenses demonstrated heavy growth of Chryseobacterium meningosepticum and Delftia acidovorans. The treatment with topical ciprofloxacin and fortified gentamicin was effective, and the infection resolved with corneal scar after 5 weeks. CONCLUSION: Use of cosmetic contact lenses and buying them online is a fairly common practice among teenagers. This can lead to serious eye infection as in this case. To our knowledge, this is the first report of contact lens-related keratitis simultaneously involving these two rare organisms.


Assuntos
Chryseobacterium/isolamento & purificação , Lentes de Contato/microbiologia , Úlcera da Córnea/microbiologia , Delftia acidovorans/isolamento & purificação , Infecções Oculares Bacterianas/microbiologia , Infecções por Bactérias Gram-Negativas/etiologia , Adolescente , Coinfecção , Feminino , Infecções por Flavobacteriaceae/etiologia , Humanos
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