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1.
Appl Environ Microbiol ; 87(1)2020 12 17.
Artigo em Inglês | MEDLINE | ID: mdl-33097506

RESUMO

The lactobacilli identified to date encompass more than 270 closely related species that were recently reclassified into 26 genera. Because of their relevance to industry, there is a need to distinguish between closely related and yet metabolically and regulatory distinct species, e.g., during monitoring of biotechnological processes or screening of samples of unknown composition. Current available methods, such as shotgun metagenomics or rRNA gene-based amplicon sequencing, have significant limitations (high cost, low resolution, etc.). Here, we generated a phylogeny of lactobacilli based on phenylalanyl-tRNA synthetase (pheS) genes and, from it, developed a high-resolution taxonomic framework which allows for comprehensive and confident characterization of the community diversity and structure of lactobacilli at the species level. This framework is based on a total of 445 pheS gene sequences, including sequences of 276 validly described species and subspecies (of a total of 282, including the proposed L. timonensis species and the reproposed L. zeae species; coverage of 98%), and allows differentiation between 265 species-level clades of lactobacilli and the subspecies of L. sakei The methodology was validated through next-generation sequencing of mock communities. At a sequencing depth of ∼30,000 sequences, the minimum level of detection was approximately 0.02 pg per µl DNA (equaling approximately 10 genome copies per µl template DNA). The pheS approach, along with parallel sequencing of partial 16S rRNA genes, revealed considerable diversity of lactobacilli and distinct community structures across a broad range of samples from different environmental niches. This novel complementary approach may be applicable to industry and academia alike.IMPORTANCE Species formerly classified within the genera Lactobacillus and Pediococcus have been studied extensively at the genomic level. To accommodate their exceptional functional diversity, the over 270 species were recently reclassified into 26 distinct genera. Despite their relevance to both academia and industry, methods that allow detailed exploration of their ecology are still limited by low resolution, high cost, or copy number variations. The approach described here makes use of a single-copy marker gene which outperforms other markers with regard to species-level resolution and availability of reference sequences (98% coverage). The tool was validated against a mock community and used to address diversity of lactobacilli and community structure in various environmental matrices. Such analyses can now be performed at a broader scale to assess and monitor the assembly, structure, and function of communities of lactobacilli at the species level (and, in some cases, even at the subspecies level) across a wide range of academic and commercial applications.


Assuntos
Genes Bacterianos , Sequenciamento de Nucleotídeos em Larga Escala/métodos , Lactobacillus/genética , Microbiota/genética , Pediococcus/genética , Fenilalanina-tRNA Ligase/genética , Lactobacillus/classificação , Lactobacillus/enzimologia , Pediococcus/classificação , Pediococcus/enzimologia
2.
Chemphyschem ; 21(19): 2150-2154, 2020 10 02.
Artigo em Inglês | MEDLINE | ID: mdl-32797657

RESUMO

The enzyme system mimicking Implication (IMPLY) and Inhibition (INHIB) Boolean logic gates has been designed. The same enzyme system was used to operate as the IMPLY or INHIB gate simply by reformulating the input signals. The optical analysis of the logic operation confirmed the output generation as expected for the studied logic gates. The conceptual approach to the IMPLY and INHIB logic gates allows their construction with many other enzymes operating in a similar way.


Assuntos
Inibidores Enzimáticos/farmacologia , Glucose Oxidase/antagonistas & inibidores , Hexoquinase/antagonistas & inibidores , Peroxidase do Rábano Silvestre/antagonistas & inibidores , Oxigenases de Função Mista/antagonistas & inibidores , Aspergillus niger/enzimologia , Biocatálise , Glucose Oxidase/metabolismo , Hexoquinase/metabolismo , Peroxidase do Rábano Silvestre/metabolismo , Oxigenases de Função Mista/metabolismo , Pediococcus/enzimologia , Saccharomyces cerevisiae/enzimologia
3.
J Am Chem Soc ; 140(28): 8990-8996, 2018 07 18.
Artigo em Inglês | MEDLINE | ID: mdl-29927576

RESUMO

Substrate channeling, in which a metabolic intermediate is directly passed from one enzyme to the next enzyme in an enzyme cascade, accelerates the processing of metabolites and improves substrate selectivity. Synthetic design and precise control of channeling outside the cellular environment are of significance in areas such as synthetic biology, synthetic chemistry, and biomedicine. In particular, the precise control of synthetic substrate channeling in response to light is highly important, but remains a major challenge. Herein, we develop a photoresponsive molecule-based synthetic substrate channeling system on DNA origami to regulate enzyme cascade activity. The photoresponsive azobenzene molecules introduced into DNA strands enable reversible switching of the position of substrate channeling to selectively activate or inhibit the enzyme cascade activity. Moreover, DNA origami allows precise control of interenzyme distance and swinging range of the swing arm to optimize the regulation efficiency. By combining the accurate and addressable assembly ability of DNA origami and the clean, rapid, and reversible regulation of photoresponsive molecules, this light-driven substrate channeling system is expected to find important applications in synthetic biology and biomedicine.


Assuntos
Compostos Azo/química , DNA/química , Nanoestruturas/química , Animais , Biocatálise , Glucosefosfato Desidrogenase/química , L-Lactato Desidrogenase/química , Leuconostoc mesenteroides/enzimologia , Luz , Oxigenases de Função Mista/química , Modelos Moleculares , Pediococcus/enzimologia , Processos Fotoquímicos , Coelhos , Especificidade por Substrato , Biologia Sintética
4.
Anal Biochem ; 555: 94-103, 2018 08 15.
Artigo em Inglês | MEDLINE | ID: mdl-29908159

RESUMO

Glycerol kinase (GK) and glycerol-3- phosphate oxidase (GPO) nanoparticles (NPs) were prepared, characterized and immobilized onto pencil graphite (PG) electrode to fabricate an improved amperometric glycerol biosensor (GKNPs/GPONPs/PGE). GKNPs/GPONPs/PGE worked in optimum conditions of pH 7.0, temperature 30 °C, at an applied potential of -0.3 V. The biosensor exhibited wide linear response in a concentration range of glycerol (0.01-45 mM) with detection limit 0.0001 µM. The biosensor revealed high sensitivity (7.24 µAmM-1cm-2), low response time (2.5s) and a good agreement with the standard enzymic colorimetric method with a correlation coefficient (R2 = 0.99). The evaluation study of biosensor offered a good analytical recovery of 98.73% when glycerol concentration was added to the sera sample. In addition, within and between batches study of working electrode showed coefficients of variation as 0.105% and 0.14%, respectively. The application of biosensor is performed in the serum of apparently healthy subject and patients affected by cardiogenic shock. There was a 20% loss in initial activity of biosensor after its regular use over a time period of 180 days, while being stored at 4 °C.


Assuntos
Técnicas Biossensoriais , Enzimas Imobilizadas/química , Proteínas de Escherichia coli/química , Glicerol Quinase/química , Glicerol/análise , Glicerolfosfato Desidrogenase/química , Grafite/química , Escherichia coli/enzimologia , Pediococcus/enzimologia
5.
BMC Genomics ; 16: 267, 2015 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-25880122

RESUMO

BACKGROUND: Pediococcus damnosus LMG 28219 is a lactic acid bacterium dominating the maturation phase of Flemish acid beer productions. It proved to be capable of growing in beer, thereby resisting this environment, which is unfavorable for microbial growth. The molecular mechanisms underlying its metabolic capabilities and niche adaptations were unknown up to now. In the present study, whole-genome sequencing and comparative genome analysis were used to investigate this strain's mechanisms to reside in the beer niche, with special focus on not only stress and hop resistances but also folate biosynthesis and exopolysaccharide (EPS) production. RESULTS: The draft genome sequence of P. damnosus LMG 28219 harbored 183 contigs, including an intact prophage region and several coding sequences involved in plasmid replication. The annotation of 2178 coding sequences revealed the presence of many transporters and transcriptional regulators and several genes involved in oxidative stress response, hop resistance, de novo folate biosynthesis, and EPS production. Comparative genome analysis of P. damnosus LMG 28219 with Pediococcus claussenii ATCC BAA-344(T) (beer origin) and Pediococcus pentosaceus ATCC 25745 (plant origin) revealed that various hop resistance genes and genes involved in de novo folate biosynthesis were unique to the strains isolated from beer. This contrasted with the genes related to osmotic stress responses, which were shared between the strains compared. Furthermore, transcriptional regulators were enriched in the genomes of bacteria capable of growth in beer, suggesting that those cause rapid up- or down-regulation of gene expression. CONCLUSIONS: Genome sequence analysis of P. damnosus LMG 28219 provided insights into the underlying mechanisms of its adaptation to the beer niche. The results presented will enable analysis of the transcriptome and proteome of P. damnosus LMG 28219, which will result in additional knowledge on its metabolic activities.


Assuntos
Cerveja/microbiologia , Genoma Bacteriano , Pediococcus/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sequência de Bases , Hibridização Genômica Comparativa , Ácido Fólico/biossíntese , Dados de Sequência Molecular , Estresse Oxidativo/genética , Pediococcus/enzimologia , Pediococcus/metabolismo , Plasmídeos/genética , Plasmídeos/metabolismo
6.
Analyst ; 140(12): 4105-13, 2015 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-25893863

RESUMO

A paper-based colorimetric biosensor suitable for point-of-care bioassay of blood samples is developed using highly stable enzyme thin-film coatings confined within inkjet printed polymeric microwells. The microwells are developed through a simple one-step inkjet printing of hydrophobic polystyrene on paper, with walls formed by the polymer that fills the gaps inside the paper body. The microwells can also be patterned to be interlinked with printed microchannels for multiplex bioassays. Thin film enzyme coatings confined within the microwells are then constructed, thereby constituting biosensors that work like traditional microwell plates, yet allow easy colorimetric readouts with naked eyes or portable devices, such as smart phones. The efficiency of the paper-based sensor was demonstrated for colorimetric assays of glucose and lactate, both as individual analytes or mixed, as well as samples with red blood cells. Such sensors showed good sensitivities within the concentration ranges of the analytes in human blood (0.5-10 mM), with a visible sensitivity of <0.5 mM detectable by naked eyes for a sample size as small as 1 µL. More accurate digital readouts were shown to be feasible with computerized scanners or smartphones. The thin-film coating format affords the paper biosensors an extended lifetime, and they could retain 100% performance over 6 months of storage at room temperature, or up to one month heated at 50 °C, which promises refrigeration-free storage of the sensor. The simple preparation, high enzyme stability and ease-of-use of the paper-based sensor promise low-cost and reliable point-of-care multiplex bioassay for biomedical diagnostics.


Assuntos
Técnicas Biossensoriais/métodos , Análise Química do Sangue/métodos , Glucose Oxidase/metabolismo , Microtecnologia/métodos , Oxigenases de Função Mista/metabolismo , Sistemas Automatizados de Assistência Junto ao Leito , Impressão , Aspergillus/enzimologia , Glicemia/análise , Colorimetria , Estabilidade Enzimática , Glucose Oxidase/química , Humanos , Tinta , Ácido Láctico/sangue , Oxigenases de Função Mista/química , Papel , Pediococcus/enzimologia , Poliestirenos/química
7.
Appl Microbiol Biotechnol ; 99(20): 8563-73, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25940238

RESUMO

Pediococcus acidilactici ATCC 8042 is a lactic acid bacteria that inhibits pathogenic microorganisms such as Staphylococcus aureus through the production of two proteins with lytic activity, one of 110 kDa and the other of 99 kDa. The 99-kDa one has high homology to a putative peptidoglycan hydrolase (PGH) enzyme reported in the genome of P. acidilactici 7_4, where two different lytic domains have been identified but not characterized. The aim of this work was the biochemical characterization of the recombinant enzyme of 99 kDa. The enzyme was cloned and expressed successfully and retains its activity against Micrococcus lysodeikticus. It has a higher N-acetylglucosaminidase activity, but the N-acetylmuramoyl-L-alanine amidase can also be detected spectrophotometrically. The protein was then purified using gel filtration chromatography. Antibacterial activity showed an optimal pH of 6.0 and was stable between 5.0 and 7.0. The optimal temperature for activity was 60 °C, and all activity was lost after 1 h of incubation at 70 °C. The number of strains susceptible to the recombinant 99-kDa enzyme was lower than that susceptible to the mixture of the 110- and 99-kDa PGHs of P. acidilactici, a result that suggests synergy between these two enzymes. This is the first PGH from LAB that has been shown to possess two lytic sites. The results of this study will aid in the design of new antibacterial agents from natural origin that can combat foodborne disease and improve hygienic practices in the industrial sector.


Assuntos
N-Acetil-Muramil-L-Alanina Amidase/isolamento & purificação , N-Acetil-Muramil-L-Alanina Amidase/metabolismo , Pediococcus/enzimologia , Sequência de Aminoácidos , Cromatografia em Gel , Clonagem Molecular , Estabilidade Enzimática , Expressão Gênica , Concentração de Íons de Hidrogênio , Viabilidade Microbiana/efeitos dos fármacos , Micrococcus/efeitos dos fármacos , Dados de Sequência Molecular , Peso Molecular , N-Acetil-Muramil-L-Alanina Amidase/química , N-Acetil-Muramil-L-Alanina Amidase/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Temperatura
8.
J Nutr ; 144(12): 1956-62, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25320181

RESUMO

BACKGROUND: Probiotic bacteria have been associated with a reduction in cardiovascular disease risk, a leading cause of death and disability. OBJECTIVES: The aim of this study was to assess the impact of dietary administration of exopolysaccharide-producing probiotic Lactobacillus cultures on lipid metabolism and gut microbiota in apolipoprotein E (apoE)-deficient mice. METHODS: First, we examined lipid metabolism in response to dietary supplementation with recombinant ß-glucan-producing Lactobacillus paracasei National Food Biotechnology Centre (NFBC) 338 expressing the glycosyltransferase (Gtf) gene from Pediococcus parvulus 2.6 (GTF), and naturally exopolysaccharide-producing Lactobacillus mucosae Dairy Product Culture Collection (DPC) 6426 (DPC 6426) compared with the non-ß-glucan-producing isogenic control strain Lactobacillus paracasei NFBC 338 (PNZ) and placebo (15% wt:vol trehalose). Second, we examined the effects on the gut microbiota of dietary administration of DPC 6426 compared with placebo. Probiotic Lactobacillus strains at 1 × 10(9) colony-forming units/d per animal were administered to apoE(-/-) mice fed a high-fat (60% fat)/high-cholesterol (2% wt:wt) diet for 12 wk. At the end of the study, aortic plaque development and serum, liver, and fecal variables involved in lipid metabolism were analyzed, and culture-independent microbial analyses of cecal content were performed. RESULTS: Total cholesterol was reduced in serum (P < 0.001; ∼33-50%) and liver (P < 0.05; ∼30%) and serum triglyceride concentrations were reduced (P < 0.05; ∼15-25%) in mice supplemented with GTF or DPC 6426 compared with the PNZ or placebo group, respectively. In addition, dietary intervention with GTF led to increased amounts of fecal cholesterol excretion (P < 0.05) compared with all other groups. Compositional sequencing of the gut microbiota revealed a greater prevalence of Porphyromonadaceae (P = 0.001) and Prevotellaceae (P = 0.001) in the DPC 6426 group and lower proportions of Clostridiaceae (P < 0.05), Peptococcaceae (P < 0.001), and Staphylococcaceae (P < 0.01) compared with the placebo group. CONCLUSION: Ingestion of exopolysaccharide-producing lactobacilli resulted in seemingly favorable improvements in lipid metabolism, which were associated with changes in the gut microbiota of mice.


Assuntos
Colesterol/sangue , Glicosiltransferases/metabolismo , Lactobacillus/metabolismo , Metabolismo dos Lipídeos , Microbiota , Probióticos/administração & dosagem , Animais , Apolipoproteínas E/genética , Aterosclerose/prevenção & controle , Dieta , Suplementos Nutricionais , Modelos Animais de Doenças , Fezes/microbiologia , Trato Gastrointestinal/microbiologia , Regulação Enzimológica da Expressão Gênica , Glicosiltransferases/genética , Lactobacillus/genética , Fígado/metabolismo , Camundongos , Camundongos Knockout , Pediococcus/enzimologia , Triglicerídeos/sangue , Molécula 1 de Adesão de Célula Vascular/sangue , beta-Glucanas/sangue
9.
Appl Microbiol Biotechnol ; 98(1): 185-98, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23515835

RESUMO

The main objectives of this study were the search for enzymatic activities responsible for biogenic amine (BA) degradation in lactic acid bacteria (LAB) strains isolated from wine, their identification, and the evaluation of their applicability for reducing BAs in wine. Fifty-three percent of the 76 LAB cell extracts showed activity against a mixture of histamine, tyramine, and putrescine when analyzed in-gel. The quantification of the degrading ability for each individual amine was tested in a synthetic medium and wine. Most of the bacteria analyzed were able to degrade the three amines in both conditions. The highest percentages of degradation in wine were those of putrescine: up to 41% diminution in 1 week. Enzymes responsible for amine degradation were isolated and purified from Lactobacillus plantarum J16 and Pediococcus acidilactici CECT 5930 strains and were identified as multicopper oxidases. This is the first report of an efficient BA reduction in wine by LAB. Furthermore, the identity of the enzymes involved has been revealed.


Assuntos
Histamina/metabolismo , Lactobacillus plantarum/enzimologia , Oxirredutases/metabolismo , Pediococcus/enzimologia , Putrescina/metabolismo , Tiramina/metabolismo , Vinho/microbiologia , Biotransformação
10.
Biotechnol Lett ; 36(3): 627-31, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24249102

RESUMO

3-Phenyllactic acid (PLA) is an antimicrobial compound with broad and effective antimicrobial activity against both bacteria and fungi. Enzymatic production of PLA can be carried out from phenylpyruvic acid by lactate dehydrogenase (LDH); however, the enzymatic reaction is accompanied by NADH oxidation that inhibits PLA biotransformation. Here, NADH regeneration was achieved using the formate dehydrogenase from Ogataea parapolymorpha and introduced into the D-PLA production process using the D-LDH from Pediococcus pentosaceus. Optimum PLA production by dual enzyme treatment was at pH 6.0 and 50 °C with both enzymes at 0.4 µM. Using 0.2 mM NADH, D-PLA production by NADH regeneration system reached 5.5 mM, which was significantly higher than that by a single-enzyme reaction.


Assuntos
Anti-Infecciosos/metabolismo , Formiato Desidrogenases/metabolismo , Lactato Desidrogenases/metabolismo , Lactatos/metabolismo , NAD/metabolismo , Pediococcus/enzimologia , Saccharomycetales/enzimologia , Concentração de Íons de Hidrogênio , Ácidos Fenilpirúvicos/metabolismo , Temperatura
11.
Indian J Exp Biol ; 52(11): 1036-44, 2014 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-25434098

RESUMO

The extracellular crude dextransucrase (0.67 U/mg) from P. pentosaceus CRAG3 (GenBank accession number JX679020) after PEG-1500 fractionation gave specific activity, 20.0 U/mg which by gel filtration resulted in 46.0 U/mg. The purified dextransucrase displayed molecular size of approximately, 224 kDa. The optimum assay conditions for dextransucrase activity were 5% sucrose in 20 mM sodium acetate buffer (pH 5.4) and 30 degrees C. The dextransucrase was stable up to 40 degrees C and at pH range of 5.4-7.0. The metal ions such as Co2+, Ca2+, Mg2+ and Zn2+ stimulated the dextransucrase activity by 56, 44, 14 and 12%, respectively. It was most stable at -20 degrees C with half-life of 307 days. Amongst various additives used, glycerol and Tween 80 provided significant stability to the enzyme with half-life 15.5 and 85.5 h, respectively as compared to control (6.9 h). The solidification of sucrose supplemented milk by purified dextransucrase due to dextran synthesis displayed its application as additive for improving the texture of dairy products.


Assuntos
Aditivos Alimentares , Proteínas Fúngicas/química , Glucosiltransferases/química , Pediococcus/enzimologia , Cátions Bivalentes/farmacologia , Cromatografia em Gel , Armazenamento de Medicamentos , Eletroforese em Gel de Poliacrilamida , Proteínas Fúngicas/isolamento & purificação , Glucosiltransferases/isolamento & purificação , Meia-Vida , Concentração de Íons de Hidrogênio , Peso Molecular , Estabilidade Proteica , Temperatura
12.
Appl Environ Microbiol ; 79(4): 1309-15, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23241976

RESUMO

The ability to produce diacetyl from pyruvate and l-serine was studied in various strains of Pediococcus pentosaceus and Pediococcus acidilactici isolated from cheese. After being incubated on both substrates, only P. pentosaceus produced significant amounts of diacetyl. This property correlated with measurable serine dehydratase activity in cell extracts. A gene encoding the serine dehydratase (dsdA) was identified in P. pentosaceus, and strains that showed no serine dehydratase activity carried mutations that rendered the gene product inactive. A functional dsdA was cloned from P. pentosaceus FAM19132 and expressed in Escherichia coli. The purified recombinant enzyme catalyzed the formation of pyruvate from L- and D-serine and was active at low pH and elevated NaCl concentrations, environmental conditions usually present in cheese. Analysis of the amino acid profiles of culture supernatants from dsdA wild-type and dsdA mutant strains of P. pentosaceus did not show differences in serine levels. In contrast, P. acidilactici degraded serine. Moreover, this species also catabolized threonine and produced alanine and α-aminobutyrate.


Assuntos
Pediococcus/metabolismo , Serina/metabolismo , Queijo/microbiologia , Clonagem Molecular , Diacetil/metabolismo , Estabilidade Enzimática , Escherichia coli/enzimologia , Escherichia coli/genética , Expressão Gênica , Concentração de Íons de Hidrogênio , L-Serina Desidratase/genética , L-Serina Desidratase/metabolismo , Pediococcus/enzimologia , Pediococcus/genética , Pediococcus/isolamento & purificação , Ácido Pirúvico/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Cloreto de Sódio
13.
Microb Cell Fact ; 12: 57, 2013 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-23758664

RESUMO

BACKGROUND: Polylactic acid (PLA), a biodegradable polymer, has the potential to replace (at least partially) traditional petroleum-based plastics, minimizing "white pollution". However, cost-effective production of optically pure L-lactic acid is needed to achieve the full potential of PLA. Currently, starch-based glucose is used for L-lactic acid fermentation by lactic acid bacteria. Due to its competition with food resources, an alternative non-food substrate such as cellulosic biomass is needed for L-lactic acid fermentation. Nevertheless, the substrate (sugar stream) derived from cellulosic biomass contains significant amounts of xylose, which is unfermentable by most lactic acid bacteria. However, the microorganisms that do ferment xylose usually carry out heterolactic acid fermentation. As a result, an alternative strain should be developed for homofermentative production of optically pure L-lactic acid using cellulosic biomass. RESULTS: In this study, an ethanologenic Escherichia coli strain, SZ470 (ΔfrdBC ΔldhA ΔackA ΔpflB ΔpdhR ::pflBp6-acEF-lpd ΔmgsA), was reengineered for homofermentative production of L-lactic acid from xylose (1.2 mole xylose = > 2 mole L-lactic acid), by deleting the alcohol dehydrogenase gene (adhE) and integrating the L-lactate dehydrogenase gene (ldhL) of Pediococcus acidilactici. The resulting strain, WL203, was metabolically evolved further through serial transfers in screw-cap tubes containing xylose, resulting in the strain WL204 with improved anaerobic cell growth. When tested in 70 g L-1 xylose fermentation (complex medium), WL204 produced 62 g L-1 L-lactic acid, with a maximum production rate of 1.631 g L-1 h-1 and a yield of 97% based on xylose metabolized. HPLC analysis using a chiral column showed that an L-lactic acid optical purity of 99.5% was achieved by WL204. CONCLUSIONS: These results demonstrated that WL204 has the potential for homofermentative production of L-lactic acid using cellulosic biomass derived substrates, which contain a significant amount of xylose.


Assuntos
Escherichia coli/metabolismo , Ácido Láctico/biossíntese , Xilose/metabolismo , Álcool Desidrogenase/deficiência , Álcool Desidrogenase/genética , Proteínas de Bactérias/genética , Biomassa , Fermentação , Engenharia Genética , L-Lactato Desidrogenase/genética , Ácido Láctico/síntese química , Pediococcus/enzimologia , Pediococcus/genética , Plasmídeos/genética , Plasmídeos/metabolismo , Poliésteres , Polímeros/síntese química , Estereoisomerismo
14.
Anal Bioanal Chem ; 405(5): 1559-68, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-22968684

RESUMO

The concept of enzyme-assisted substrate sensing based on use of fluorescent markers to detect the products of enzymatic reaction has been investigated by fabrication of micron-scale polyelectrolyte capsules containing enzymes and dyes in one entity. Microcapsules approximately 5 µm in size entrap glucose oxidase or lactate oxidase, with peroxidase, together with the corresponding markers Tris(4,7-diphenyl-1,10-phenanthroline)ruthenium(II) dichloride (Ru(dpp)) complex and dihydrorhodamine 123 (DHR123), which are sensitive to oxygen and hydrogen peroxide, respectively. These capsules are produced by co-precipitation of calcium carbonate particles with the enzyme followed by layer-by-layer assembly of polyelectrolytes over the surface of the particles and incorporation of the dye in the capsule interior or in the multilayer shell. After dissolution of the calcium carbonate the enzymes and dyes remain in the multilayer capsules. In this study we produced enzyme-containing microcapsules sensitive to glucose and lactate. Calibration curves based on fluorescence intensity of Ru(dpp) and DHR123 were linearly dependent on substrate concentration, enabling reliable sensing in the millimolar range. The main advantages of using these capsules with optical recording is the possibility of building single capsule-based sensors. The response from individual capsules was observed by confocal microscopy as increasing fluorescence intensity of the capsule on addition of lactate at millimolar concentrations. Because internalization of the micron-sized multi-component capsules was feasible, they could be further optimized for in-situ intracellular sensing and metabolite monitoring on the basis of fluorescence reporting.


Assuntos
Técnicas Biossensoriais/métodos , Cápsulas/química , Enzimas Imobilizadas/metabolismo , Corantes Fluorescentes/química , Glucose Oxidase/metabolismo , Oxigenases de Função Mista/metabolismo , Peroxidase/metabolismo , Armoracia/enzimologia , Aspergillus niger/enzimologia , Carbonato de Cálcio/química , Complexos de Coordenação/química , Enzimas Imobilizadas/química , Glucose/análise , Glucose Oxidase/química , Ácido Láctico/análise , Oxigenases de Função Mista/química , Pediococcus/enzimologia , Peroxidase/química , Fenantrolinas/química , Rodaminas/química , Rutênio/química
15.
Food Microbiol ; 33(1): 107-13, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23122508

RESUMO

The accumulation of citrulline and ornithine in wine or beer as a result of the arginine catabolism of some lactic acid bacteria (LAB) species increases the risk of ethyl carbamate and putrescine formation, respectively. Several LAB species, which are found as spoilage bacteria in alcoholic beverages, have been reported to be arginine degrading. This study evaluates the effect of ethanol content and low pH on the excretion of citrulline and ornithine by two strains belonging to the potential contaminant species Lactobacillus brevis and Pediococcus pentosaceus. In the conditions that most affected cell viability, arginine consumption per cell increased noticeably, indicating that arginine utilization may be a stress responsive mechanism. L. brevis showed a higher accumulation of ornithine in the media than P. pentosaceus. In the presence of ethanol, a higher expression of the arcC gene was found in P. pentosaceus, which resulted in a lower excretion of citrulline and ornithine than in L. brevis. This suggests that L. brevis is more likely to produce these amino acids, which are precursors of ethyl carbamate and putrescine.


Assuntos
Proteínas de Bactérias/genética , Citrulina/metabolismo , Etanol/metabolismo , Regulação Enzimológica da Expressão Gênica , Levilactobacillus brevis/metabolismo , Ornitina/metabolismo , Pediococcus/metabolismo , Fosfotransferases (Aceptor do Grupo Carboxila)/genética , Arginina/metabolismo , Proteínas de Bactérias/metabolismo , Regulação Bacteriana da Expressão Gênica , Concentração de Íons de Hidrogênio , Levilactobacillus brevis/enzimologia , Levilactobacillus brevis/genética , Pediococcus/enzimologia , Pediococcus/genética , Fosfotransferases (Aceptor do Grupo Carboxila)/metabolismo , Vinho/análise , Vinho/microbiologia
16.
J Bacteriol ; 194(3): 708-14, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-22123251

RESUMO

Ltnα and Ltnß are individual components of the two-peptide lantibiotic lacticin 3147 and are unusual in that, although ribosomally synthesized, they contain d-amino acids. These result from the dehydration of l-serine to dehydroalanine by LtnM and subsequent stereospecific hydrogenation to d-alanine by LtnJ. Homologues of LtnJ are rare but have been identified in silico in Staphylococcus aureus C55 (SacJ), Pediococcus pentosaceus FBB61 (PenN), and Nostoc punctiforme PCC73102 (NpnJ, previously called NpunJ [P. D. Cotter et al., Proc. Natl. Acad. Sci. U. S. A. 102:18584-18589, 2005]). Here, the ability of these enzymes to catalyze d-alanine formation in the lacticin 3147 system was assessed through heterologous enzyme production in a ΔltnJ mutant. PenN successfully incorporated d-alanines in both peptides, and SacJ modified Ltnα only, while NpnJ was unable to modify either peptide. Site-directed mutagenesis was also employed to identify residues of key importance in LtnJ. The most surprising outcome from these investigations was the generation of peptides by specific LtnJ mutants which exhibited less bioactivity than those generated by the ΔltnJ strain. We have established that the reduced activity of these peptides is due to the inability of the associated LtnJ enzymes to generate d-alanine residues in a stereospecific manner, resulting in the presence of both d- and l-alanines at the relevant locations in the lacticin 3147 peptides.


Assuntos
Alanina/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Bacteriocinas/biossíntese , Lactococcus lactis/metabolismo , Nostoc/enzimologia , Pediococcus/genética , Staphylococcus aureus/enzimologia , Sequência de Aminoácidos , Bacteriocinas/química , Bacteriocinas/genética , Bioengenharia , Lactococcus lactis/química , Lactococcus lactis/enzimologia , Lactococcus lactis/genética , Dados de Sequência Molecular , Nostoc/genética , Pediococcus/enzimologia , Alinhamento de Sequência , Staphylococcus aureus/genética
17.
Analyst ; 137(16): 3854-61, 2012 Aug 21.
Artigo em Inglês | MEDLINE | ID: mdl-22763889

RESUMO

A novel amperometric bienzymatic biosensor has been developed based on the incorporation of Lactate Oxidase (LOx) and Horseradish Peroxidase (HRP) into a carbon nanotube/polysulfone membrane by the phase inversion technique onto screen-printed electrodes (SPEs). In order to improve the sensitivity and reduce the working potential, experimental conditions have been optimized and ferrocene has also been incorporated into the membrane as a redox mediator of the enzymatic reactions, which allows the reduction of H(2)O(2) at -100 mV. Measurements were carried out in phosphate buffer solution at pH 7.5 and under batch conditions. The biosensor response time to L-lactate was only 20 s and showed a good reproducibility (RSD 2.7%). Moreover, the detection limit was 0.05 mg L(-1) of l-lactate with a linear interval range from 0.1 mg L(-1) to 5 mg L(-1). Finally, the biosensor has been applied to the determination of l-lactic acid in different wine and beer samples. Then, the results obtained with the biosensor were compared with the ones obtained using, as a reference method, a commercial kit based on spectrophotometric measurements, obtaining an excellent agreement between the results, validating our approach.


Assuntos
Cerveja/análise , Técnicas Biossensoriais/métodos , Eletroquímica/métodos , Peroxidase do Rábano Silvestre/metabolismo , Lactatos/análise , Oxigenases de Função Mista/metabolismo , Vinho/análise , Animais , Soluções Tampão , Bovinos , Peroxidase do Rábano Silvestre/química , Concentração de Íons de Hidrogênio , Modelos Lineares , Membranas Artificiais , Oxigenases de Função Mista/química , Nanotubos de Carbono/química , Pediococcus/enzimologia , Polímeros/química , Sulfonas/química
18.
Biosci Biotechnol Biochem ; 76(4): 853-5, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22484960

RESUMO

D-Lactate dehydrogenase (D-LDH) from Pediococcus pentosaceus ATCC 25745 was found to produce D-3-phenyllactic acid from phenylpyruvate. The optimum pH and temperature for enzyme activity were pH 5.5 and 45 °C. The Michaelis-Menten constant (K(m)), turnover number (k(cat)), and catalytic efficiency (k(cat)/K(m)) values for the substrate phenylpyruvate were estimated to be 1.73 mmol/L, 173 s(-1), and 100 (mmol/L)(-1) s(-1) respectively.


Assuntos
Proteínas de Bactérias/metabolismo , Lactato Desidrogenases/metabolismo , Lactatos/metabolismo , Pediococcus/enzimologia , Ácidos Fenilpirúvicos/metabolismo , Proteínas de Bactérias/genética , Cátions Bivalentes , Clonagem Molecular , Escherichia coli , Concentração de Íons de Hidrogênio , Cinética , Lactato Desidrogenases/genética , Metais Pesados/metabolismo , Pediococcus/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Temperatura
19.
Biotechnol Lett ; 34(5): 907-11, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22261863

RESUMO

The gene coding for D-lactate dehydrogenase (D-LDH) from Pediococcus acidilactici DSM 20284 was cloned and expressed in E. coli. The recombinant enzyme was purified by nickel-affinity chromatography. It converted phenylpyruvic acid (PPA) to 3-phenyllactic acid maximally at 30°C and pH 5.5 with a specific activity of 140 and 422 U/mg for PPA and pyruvate, respectively. The K(m), turnover number (k(cat)), and catalytic efficiency (k(cat)/K(m)) for PPA were 2.9 mM, 305 s(-1), and 105 mM(-1) s(-1), respectively.


Assuntos
Lactato Desidrogenases/genética , Lactato Desidrogenases/metabolismo , Lactatos/metabolismo , Pediococcus/enzimologia , Pediococcus/genética , Ácidos Fenilpirúvicos/metabolismo , Animais , Biotransformação , Gatos , Cromatografia de Afinidade , Clonagem Molecular , Estabilidade Enzimática , Escherichia coli/enzimologia , Escherichia coli/genética , Expressão Gênica , Concentração de Íons de Hidrogênio , Cinética , Lactato Desidrogenases/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Temperatura
20.
Anal Chem ; 83(21): 8123-9, 2011 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-21942440

RESUMO

Nitrogen-doped carbon nanotubes (N-CNTs) provide a simple, robust, and unique platform for biosensing. Their catalytic activity toward the oxygen reduction reaction (ORR) and subsequent hydrogen peroxide (H(2)O(2)) disproportionation creates a sensitive electrochemical response to enzymatically generated H(2)O(2) on the N-CNT surface, eliminating the need for additional peroxidases or electron-transfer mediators. Glassy carbon electrodes were modified with 7.4 atom % N-CNTs, lactate oxidase (LOx), and a tetrabutylammonium bromide (TBABr)-modified Nafion binder. The resulting amperometric l-lactate biosensors displayed a sensitivity of 0.040 ± 0.002 A M(-1) cm(-2), a low operating potential of -0.23 V (vs Hg/Hg(2)SO(4)), a repeatability of 1.6% relative standard deviation (RSD) for 200 µM samples of lactate, a fabrication reproducibility of 5.0% (RSD), a limit of detection of 4.1 ± 1.6 µM, and a linear range of 14-325 µM. Additionally, over a 90 day period, the repeatability for 200 µM samples of lactate remained below 3.4% (RSD). Direct electron transfer was observed between the LOx redox-active center and the N-CNTs with the electroactive surface coverage determined to be 0.27 nmol cm(-2).


Assuntos
Técnicas Biossensoriais , Eletroquímica , Oxigenases de Função Mista/química , Nanotubos de Carbono , Nitrogênio/química , Catálise , Eletrodos , Peróxido de Hidrogênio/química , Ácido Láctico/química , Oxigenases de Função Mista/metabolismo , Oxirredução , Pediococcus/enzimologia
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