The amino acid sequence of the cowpea strain of tobacco mosaic virus protein.

The amino acid sequence of the coat protein of the cowpea strain of tobacco mosaic virus (cowpea virus) has been determined. The tryptic peptide overlaps were obtained by digesting the protein with chymotrypsin and separating and analysing the lysine-and arginine-containing chymotryptic peptides. The primary structure of cowpea virus protein has been found to differ markedly from that of any other known strain of tobacco mosaic virus, and contains 3 amino acid residues more and 96 amino acid changes from the type strain. The significance of the distribution of those areas of the protein in which the amino acid residues are the same for all naturally occurring strains and chemically induced mutants of tobacco mosaic virus so far studied and the residues that form the important carboxyl-carboxylate pairs are discussed.

Fluorescent study of tobacco mosaic virus protein.

Protein fluorescence properties of tobacco mosaic virus [3 Trp residues per monomer (positions 17, 52, 152)] and of two tobacco mosaic virus mutants [green tomato atypical mosaic virus, 2 Trp (52, 152) and cucumber virus4, 1 Trp (unknown position)] have been studied. Emission spectra, fluorescence quantum yields and lifetimes were determined. Results showed that protein fluorescence is due to buried Trp only, except for the cucumber virus4 strain, in which Tyr also contributed to the emission. Comparison of the three strains showed that Trp 17 and Trp 52 have high fluorescence yields (phi17 = 0.29; phi52 = 0.37) whereas Trp 152 (probably present in cucumber virus4) is strongly quenched (phi152 = 0.035). An unusually efficient Tyr leads to Trp energy transfer was observed in tobacco mosaic virus protein, indicating that most of four Tyr residues are located near the highly fluorescent Trp.

31P nuclear magnetic resonance of the RNA in tobacco mosaic virus.

Solid state 31P n.m.r. data concerning the structure of the RNA in TMV are presented in light of the prior diffraction and model building results on this system (Stubbs et al., 1977; Stubbs & Stauffacher, 1981). The 31P chemical shift anisotropy powder pattern of a stationary, unoriented solution of TMV shows the RNA to be immobilized by the coat protein-RNA interactions, since the principal values (sigma 11 = 83, sigma 22 = 25, sigma 33 = -108 p.p.m. relative to external 85% H3PO4) are essentially the same as those of a static phosphodiester group. There are three peaks in the isotropic 31P n.m.r. spectrum obtained with magic angle sample spinning, indicating three distinct phosphate environments. There are three peaks in the 31P n.m.r. spectrum from an oriented TMV solution, indicating three distinct phosphate orientations.

Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus.

Sequence data are available for the coat proteins of seven tobamoviruses, with homologies ranging from at least 26% to 82%, and atomic co-ordinates are known for tobacco mosaic virus (TMV) vulgare. A significant spatial relationship has been found between groups of residues with identical amino acid substitution patterns. This strongly suggest that their location is linked to a particular function, at least in viruses identical with the wild-type for these residues. The most conserved feature of TMV is the RNA binding region. Core residues are conserved in all viruses or show mutations complementary in volume. The specificity of inter-subunit contacts is achieved in different ways in the three more distantly related viruses.

The use of thermally activated tritium atoms for structural-biological investigations: the topography of the TMV protein-accessible surface of the virus.

Thermally activated tritium atoms were used for studying the topography of the TMV protein-accessible surface of the virus. The accessibility profile of amino acid residues in a protein polypeptide chain was determined from data on the intramolecular distribution of a tritium label in the TMV protein. It was shown that tryptic peptides T3, T4, T12, the N-terminal region of peptide T1 and the proximal tryptic peptide T8 (located 20 to 25 A (1 A = 0.1 nm) from the viral axis) are accessible to tritium labelling. The fact of tritiation of the viral RNA was detected as well. This evidence was compared with the high-resolution X-ray analysis data for the TMV. A model is suggested to explain the exposure of the buried sites of the virus to thermally activated tritium atoms. The possibilities and limitations of this method in studying the surface topography of proteins in supramolecular systems as well as for location of protein antigenic regions are discussed.

Calcium ion binding by isolated tobacco mosaic virus coat protein.

Calcium ion titrations were performed on solutions of tobacco mosaic virus coat protein using a calcium-specific ion-exchange electrode. Isolated coat protein was found incapable of binding calcium ions under equilibrium conditions at pH values above its iso-ionic point (pH 4.3 to 4.6). However, calcium ions were found to bind to coat protein under non-equilibrium conditions, which suggests that the isolated coat protein has the proper conformation to bind calcium ions at the iso-ionic point.

Calcium and potassium ion binding by tobacco mosaic virus ribonucleic acid.

Calcium and potassium ion titration experiments were performed on solutions of tobacco mosaic virus RNA using ion-specific electrodes. The data obtained were analyzed using Scatchard and Klotz plots for the number of binding sites per nucleotide (n), and the apparent stability constant for complex formation, beta Me. The experimental design also allowed for the determination of the number of protons released per metal ion bound, chi. The calcium ion titration in water yielded values of 0.45 for n, 6.03 for log beta Ca and 0.24 for chi. When this titration was repeated in 0.01 M-KCl, the values were found to be 0.11 for n, 5.08 for log beta Ca and zero for chi. An aqueous potassium titration was also performed, with values for n, log beta K and chi of 0.25, 2.96 and less than 0.10, respectively.

Location of the cistron of the tobacco mosaic virus coat protein.

Treatment of tobacco mosaic virus (TMV) RNA with T1 RNase under mild conditions cuts the RNA molecule into a large number of fragments, only a few of which may be specifically recognized by disks of TMV protein. It has been shown elsewhere that these specifically recognized RNA fragments are a part of the coat protein cistron, the portion coding for amino acids 95 to 129 of the coat protein. It is reported that different size classes of partially uncoated virus particles were prepared by limited reconstitution between TMV RNA and protein or by partial stripping of intact virus with DMSO. Both procedures produce nucleoprotein rods in which the 5'-terminal portion of the RNA is encapsidated and the 3'-terminal region is free. The free and the encapsidated portions of the RNA were each tested for the ability to give rise to the aforesaid specifically recognized fragments of the coat protein cistron upon partial T1 RNase digestion. It was found that only the 3'-terminal third of the virus particle need to be uncoated in order to expose the portion of the RNA molecule from which these fragments are derived. We conclude, therefore, that the coat protein cistron is situated upon the 3'-terminal third of the RNA chain, i.e. within 2000 nucleotides of the 3'-end.

Nucleotide sequence and its character of cistron coding for the 30 K protein of tobacco mosaic virus (OM strain).

The nucleotide sequence of cloned cDNA copies of the common strain of tobacco mosaic virus RNA corresponding to the 2,000 nucleotides at the 3'-end was determined. The 30 K protein cistron was revealed to be located at residues 687-1,493 from the 3'-end. The 30 K protein is composed of 267 amino acids and is probably a basic protein. The 5' flanking regions of both the coat protein and the 30 K protein cistrons were very U-rich, and a homology was found between the sequence around the capping site of the coat protein mRNA and the sequence upstream from the 30 K protein cistron.

The generality of cation-binding sites in rod-shaped viruses.

Hydrogen-ion titration curves have been measured for two filamentous plant viruses (clover yellow mosaic virus and potato virus X) and two filamentous bacterial viruses (fd and Pf1) with and without Ca2+ or Mg2+ ions present, and for the protein of the PM6 mutant of tobacco mosaic virus. The bacterial viruses do not possess the 'strong' cation-binding sites found in all plant viruses, but they have 'weak' sites that can be assigned to juxtaposed carboxylate groups on their external surfaces. The strong sites in plant viruses still cannot be assigned to any particular amino-acid side chains, but they must be located in the region of high electronegativity near the axis.

Surface activation of carbon film supports for biological electron microscopy.

The effect of glow-discharging on naked carbon-filmed grids has been evaluated. The effect of different locations of the grids within a DC discharge, operated in the normal glow, was analyzed by applying various biological specimens to the grids. Two locations were found to give consistent results: (a) in Crookes dark space, particulate specimens, negatively stained, spread evenly--suggesting a new negative surface charge of the support; (b) below the anode, nucleic acids, selectively (positively) stained, appeared as well spread filaments, indicating a net positive surface charge.

Protein composition of unusual tobacco mosaic virus strains.

Amino acid analyses have been made of the proteins of single-lesion isolates of five strains of tobacco mosaic virus (TMV) differentiated by Lycopersicon hosts. These hosts differed in their genetical control of resistance to TMV, and the virus strains had therefore survived specific selection pressures. Two of the five strains differed in their amino acid composition from type TMV and from all other tomato strains of TMV previously examined. Symptoms induced by the five strains in four tomato lines and in Nicotiana tabacum cvs White Burley and Kawala are described.

Differential pulse-polarographic analysis of tobacco mosaic virus.

The tobacco mosaic virus (TMV) strain vulgare and its mutant TMV 483 (with glutamine-9 replaced by histidine) and the denatured protein of TMV vulgare were analysed by direct current (d. c.) and differential (derivative) pulse polarography (DPP) in the basic electrolyte composed of 0.001 M Co(NH3)6Cl3, 0.1 M NH4Cl and 0.1 M NH3 at 0 degrees C. The DPP method gave a substantially better resolution of the polarographic catalytic maxima A and B, but a much lower resolution of the maxima B and C, as compared with the d. c. polarographic method. The clear differentiation of the maximum A from maximum B by DPP permitted to study the variation of maximum A in the course of alkaline degradation of TMV. But for the study of TMV protein denaturation the d. c. polarography is preferable, because the denaturation is accompanied by the appearance and rise of maximum C which can be clearly differentiated from maximum B by d. c. polarography rather than by DPP. The DPP method was more, sensitive than d. c. polarography. The denatured TMV protein can be determined by DPP at concentrations around 0.1 microgram/ml.

[Study of three-dimensional structure of proteins by means of tritium labeling. I. Free amino acids as a model of residues in an unfolded polypeptide chain]. / Issledovanie prostranstvennoi struktury belkov pri pomoshchi tritievoi metki. I. Svobodnye aminokisloty kak model' ostatkov v razvernutoi polipeptidnoi tsepi.

Probabilities of the incorporation of tritium label into various amino acids with alanine as a standard have been determined by "bombing" solid targets with a 3H-atom beam (2 000 K). The results show that amino acids can be used with sufficient accuracy as models of amino acid residues in a polypeptide chain under 100%, accessibility. The resulting coefficients, if taken into consideration in the analysis of intramolecular distribution of tritium in short tryptic peptides of TMV protein, will yield an equiprobable distribution in the case when the label has been introduced into a peptide. The distribution is not uniform, however, if a labelled peptide has been isolated from an "irradiated" hydrolysate protein.

[Analysis of polypeptides of virus-specific informosomes induced by tobacco mosaic virus and potato virus X]. / Analiz polipeptidov virusspetsificheskikh informosom, indutsiruemykh virusom tabachnoi mozaiki i X-virusom kartofelia.

Informosome-like virus-specific ribonucleoprotein (vRNP) of tobacco mosaic virus (TMV) comprise a set of four major polypeptides having molecular weights of 17 500, 31 000, 37 000 and 39 000. Of the minor polypeptides, those of apparent molecular weights 25 000, 55 000, 68 000 and 70 000 had electrophoretic mobilities of polypeptides found in a ribonucleoprotein preparation from uninoculated plants. Polypeptide with mol.wt. 175 000 is TMV coat protein so far as: a) vRNP was precipitated with immunoglobulins against TMV and TMV coat protein; b) it had electrophoretic mobility similar to mobility of TMV coat protein; c) the peptide map of polypeptides with mol.wts 31 000, 37 000 and 39 000 are probably virus-specific-products. This is supposed because they are not present in cell informosomes protein, and they are not revealed in vRNP induced in cells after infection with potato virus X (PVX). Electrophoresis of vRNP-PVX protein reveals polypeptides of 23 000 (PVX coat protein), 55 000, 70 000, 78 000, 95 000, 120 000 and 145 000.