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1.
Immunity ; 54(4): 753-768.e5, 2021 04 13.
Artigo em Inglês | MEDLINE | ID: mdl-33765435

RESUMO

Viral infections induce a conserved host response distinct from bacterial infections. We hypothesized that the conserved response is associated with disease severity and is distinct between patients with different outcomes. To test this, we integrated 4,780 blood transcriptome profiles from patients aged 0 to 90 years infected with one of 16 viruses, including SARS-CoV-2, Ebola, chikungunya, and influenza, across 34 cohorts from 18 countries, and single-cell RNA sequencing profiles of 702,970 immune cells from 289 samples across three cohorts. Severe viral infection was associated with increased hematopoiesis, myelopoiesis, and myeloid-derived suppressor cells. We identified protective and detrimental gene modules that defined distinct trajectories associated with mild versus severe outcomes. The interferon response was decoupled from the protective host response in patients with severe outcomes. These findings were consistent, irrespective of age and virus, and provide insights to accelerate the development of diagnostics and host-directed therapies to improve global pandemic preparedness.


Assuntos
Imunidade/genética , Viroses/imunologia , Apresentação de Antígeno/genética , Estudos de Coortes , Hematopoese/genética , Humanos , Interferons/sangue , Células Matadoras Naturais/imunologia , Células Matadoras Naturais/patologia , Células Mieloides/imunologia , Células Mieloides/patologia , Prognóstico , Índice de Gravidade de Doença , Biologia de Sistemas , Transcriptoma , Viroses/sangue , Viroses/classificação , Viroses/genética , Vírus/classificação , Vírus/patogenicidade
2.
Nucleic Acids Res ; 49(D1): D1334-D1346, 2021 01 08.
Artigo em Inglês | MEDLINE | ID: mdl-33156327

RESUMO

In 2014, the National Institutes of Health (NIH) initiated the Illuminating the Druggable Genome (IDG) program to identify and improve our understanding of poorly characterized proteins that can potentially be modulated using small molecules or biologics. Two resources produced from these efforts are: The Target Central Resource Database (TCRD) (http://juniper.health.unm.edu/tcrd/) and Pharos (https://pharos.nih.gov/), a web interface to browse the TCRD. The ultimate goal of these resources is to highlight and facilitate research into currently understudied proteins, by aggregating a multitude of data sources, and ranking targets based on the amount of data available, and presenting data in machine learning ready format. Since the 2017 release, both TCRD and Pharos have produced two major releases, which have incorporated or expanded an additional 25 data sources. Recently incorporated data types include human and viral-human protein-protein interactions, protein-disease and protein-phenotype associations, and drug-induced gene signatures, among others. These aggregated data have enabled us to generate new visualizations and content sections in Pharos, in order to empower users to find new areas of study in the druggable genome.


Assuntos
Bases de Dados Factuais , Genoma Humano , Doenças Neurodegenerativas/genética , Proteômica/métodos , Software , Viroses/genética , Animais , Anticonvulsivantes/química , Anticonvulsivantes/uso terapêutico , Antivirais/química , Antivirais/uso terapêutico , Produtos Biológicos/química , Produtos Biológicos/uso terapêutico , Mineração de Dados/estatística & dados numéricos , Interações Hospedeiro-Patógeno/efeitos dos fármacos , Interações Hospedeiro-Patógeno/genética , Humanos , Internet , Aprendizado de Máquina/estatística & dados numéricos , Camundongos , Camundongos Knockout , Terapia de Alvo Molecular/métodos , Doenças Neurodegenerativas/classificação , Doenças Neurodegenerativas/tratamento farmacológico , Doenças Neurodegenerativas/virologia , Mapeamento de Interação de Proteínas , Proteoma/agonistas , Proteoma/antagonistas & inibidores , Proteoma/genética , Proteoma/metabolismo , Bibliotecas de Moléculas Pequenas/química , Bibliotecas de Moléculas Pequenas/uso terapêutico , Viroses/classificação , Viroses/tratamento farmacológico , Viroses/virologia
3.
Plant Dis ; 107(7): 2061-2069, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-36510429

RESUMO

Sweet potato virus disease (SPVD) is a global constraint to sweetpotato (Ipomoea batatas) production, especially under intensive cultivation in the humid tropics such as East Africa. The objectives of this study were to develop a precision SPVD phenotyping protocol, to find new SPVD-resistant genotypes, and to standardize the first stages of screening for SPVD resistance. The first part of the protocol was based on enzyme-linked immunosorbent assay results for sweet potato chlorotic stunt virus (SPCSV) and sweet potato virus C (SPVC) with adjustments to a negative control (uninfected clone Tanzania) and was performed on a prebreeding population (VZ08) comprising 455 clones and 27 check clones graft inoculated under screenhouse conditions. The second part included field studies with 52 selected clones for SPCSV resistance from VZ08 and 8 checks. In screenhouse conditions, the resistant and susceptible check clones performed as expected; 63 clones from VZ08 exhibited lower relative absorbance values for SPCSV and SPVC than inoculated check Tanzania. Field experiments confirmed SPVD resistance of several clones selected by relative absorbance values (nine resistant clones in two locations; that is, 17.3% of the screenhouse selection), supporting the reliability of our method for SPVD-resistance selection. Two clones were promising, exhibiting high storage root yields of 28.7 to 34.9 t ha-1 and SPVD resistance, based on the proposed selection procedure. This modified serological analysis for SPVD-resistance phenotyping might lead to more efficient development of resistant varieties by reducing costs and time at early stages, and provide solid data for marker-assisted selection with a quantitative tool for classifying resistance.[Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.


Assuntos
Ipomoea batatas , Potyvirus , Viroses , Viroses/classificação , Ipomoea batatas/virologia , Potyvirus/classificação , Potyvirus/genética , Tanzânia , Resistência à Doença
4.
J Nanobiotechnology ; 20(1): 41, 2022 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-35062978

RESUMO

Early detection of viral pathogens by DNA-sensors in clinical samples, contaminated foods, soil or water can dramatically improve clinical outcomes and reduce the socioeconomic impact of diseases such as COVID-19. Clustered regularly interspaced short palindromic repeat (CRISPR) and its associated protein Cas12a (previously known as CRISPR-Cpf1) technology is an innovative new-generation genomic engineering tool, also known as 'genetic scissors', that has demonstrated the accuracy and has recently been effectively applied as appropriate (E-CRISPR) DNA-sensor to detect the nucleic acid of interest. The CRISPR-Cas12a from Prevotella and Francisella 1 are guided by a short CRISPR RNA (gRNA). The unique simultaneous cis- and trans- DNA cleavage after target sequence recognition at the PAM site, sticky-end (5-7 bp) employment, and ssDNA/dsDNA hybrid cleavage strategies to manipulate the attractive nature of CRISPR-Cas12a are reviewed. DNA-sensors based on the CRISPR-Cas12a technology for rapid, robust, sensitive, inexpensive, and selective detection of virus DNA without additional sample purification, amplification, fluorescent-agent- and/or quencher-labeling are relevant and becoming increasingly important in industrial and medical applications. In addition, CRISPR-Cas12a system shows great potential in the field of E-CRISPR-based bioassay research technologies. Therefore, we are highlighting insights in this research direction.


Assuntos
Sistemas CRISPR-Cas/fisiologia , DNA Viral/isolamento & purificação , Técnicas de Amplificação de Ácido Nucleico , Animais , Técnicas Biossensoriais/métodos , Técnicas Biossensoriais/tendências , COVID-19/virologia , DNA Viral/análise , Poluentes Ambientais/análise , Poluentes Ambientais/isolamento & purificação , Contaminação de Alimentos/análise , Humanos , Tipagem Molecular/métodos , Tipagem Molecular/tendências , Técnicas de Amplificação de Ácido Nucleico/métodos , Técnicas de Amplificação de Ácido Nucleico/tendências , SARS-CoV-2/genética , Virologia/métodos , Virologia/tendências , Viroses/classificação , Viroses/diagnóstico , Viroses/virologia
5.
J Med Virol ; 93(6): 3401-3411, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-32779756

RESUMO

The objectives of this study were to investigate the prevalence of respiratory syncytial virus (RSV) infections in Bulgaria, to characterize the genetic diversity of the RSV strains, and to perform amino acid sequence analysis of the RSV G protein. Clinical, epidemiological data and nasopharyngeal swabs were prospectively collected from children aged less than 5 years presenting with acute respiratory infections from October 2016 to September 2018. Real-time polymerase chain reaction for 12 respiratory viruses, and sequencing, phylogenetic, and amino acid analyses of the RSV G gene/protein were performed. Of the 875 children examined, 645 (73.7%) were positive for at least one viral respiratory pathogen. RSV was the most commonly detected virus (26.2%), followed by rhinoviruses (15%), influenza A (H3N2) (9.7%), adenoviruses (9%), bocaviruses (7.2%), human metapneumovirus (6.1%), parainfluenza viruses 1/2/3 (5.8%), influenza type B (5.5%), and A(H1N1)pdm09 (3.4%). The detection rate for RSV varied across two winter seasons (36.7% vs 20.3%). RSV-B cases outnumbered those of the RSV-A throughout the study period. RSV was the most common virus detected in patients with bronchiolitis (45.1%) and pneumonia (24%). Phylogenetic analysis indicated that all the sequenced RSV-A strains belonged to the ON1 genotype and the RSV-B strains were classified as BA9 genotype. Amino acid substitutions at 15 and 22 positions of the HVR-2 were identified compared with the ON1 and BA prototype strains, respectively. This study revealed the leading role of RSV as a causative agent of serious respiratory illnesses in early childhood, year-on-year fluctuations in RSV incidence, the dominance of RSV-B, and relatively low genetic diversity in the circulating RSV strains.


Assuntos
Genótipo , Infecções por Vírus Respiratório Sincicial/epidemiologia , Vírus Sincicial Respiratório Humano/classificação , Vírus Sincicial Respiratório Humano/genética , Bulgária/epidemiologia , Pré-Escolar , Feminino , Variação Genética , Humanos , Lactente , Recém-Nascido , Masculino , Técnicas de Diagnóstico Molecular , Filogenia , Prevalência , Estudos Prospectivos , Infecções por Vírus Respiratório Sincicial/virologia , Infecções Respiratórias/epidemiologia , Infecções Respiratórias/virologia , Estações do Ano , Análise de Sequência de DNA , Proteínas Virais/genética , Viroses/classificação , Viroses/epidemiologia
6.
Annu Rev Microbiol ; 70: 125-41, 2016 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-27607550

RESUMO

High-throughput sequencing technologies have revolutionized how we think about viruses. Investigators can now go beyond pathogenic viruses and have access to the thousands of viruses that inhabit our bodies without causing clinical symptoms. By studying their interactions with each other, with other microbes, and with host genetics and immune systems, we can learn how they affect health and disease. This article reviews current knowledge of the composition and diversity of the human virome in physiologically healthy individuals. It focuses on recent results from metagenomics studies and discusses the contribution of bacteriophages and eukaryotic viruses to human health.


Assuntos
Microbiota , Viroses/genética , Viroses/virologia , Vírus/isolamento & purificação , Doenças Assintomáticas , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Metagenômica , Viroses/classificação , Vírus/genética , Vírus/metabolismo
7.
Int J Mol Sci ; 22(11)2021 May 26.
Artigo em Inglês | MEDLINE | ID: mdl-34073389

RESUMO

The aetiology of Kawasaki disease (KD), an acute inflammatory disorder of childhood, remains unknown despite various triggers of KD having been proposed. Host 'omic profiles offer insights into the host response to infection and inflammation, with the interrogation of multiple 'omic levels in parallel providing a more comprehensive picture. We used differential abundance analysis, pathway analysis, clustering, and classification techniques to explore whether the host response in KD is more similar to the response to bacterial or viral infections at the transcriptomic and proteomic levels through comparison of 'omic profiles from children with KD to those with bacterial and viral infections. Pathways activated in patients with KD included those involved in anti-viral and anti-bacterial responses. Unsupervised clustering showed that the majority of KD patients clustered with bacterial patients on both 'omic levels, whilst application of diagnostic signatures specific for bacterial and viral infections revealed that many transcriptomic KD samples had low probabilities of having bacterial or viral infections, suggesting that KD may be triggered by a different process not typical of either common bacterial or viral infections. Clustering based on the transcriptomic and proteomic responses during KD revealed three clusters of KD patients on both 'omic levels, suggesting heterogeneity within the inflammatory response during KD. The observed heterogeneity may reflect differences in the host response to a common trigger, or variation dependent on different triggers of the condition.


Assuntos
Infecções Bacterianas , Perfilação da Expressão Gênica , Síndrome de Linfonodos Mucocutâneos , Proteômica , Viroses , Adolescente , Infecções Bacterianas/classificação , Infecções Bacterianas/diagnóstico , Infecções Bacterianas/metabolismo , Criança , Pré-Escolar , Biologia Computacional , Feminino , Humanos , Masculino , Síndrome de Linfonodos Mucocutâneos/classificação , Síndrome de Linfonodos Mucocutâneos/diagnóstico , Síndrome de Linfonodos Mucocutâneos/metabolismo , Viroses/classificação , Viroses/diagnóstico , Viroses/metabolismo
8.
BMC Pregnancy Childbirth ; 19(1): 392, 2019 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-31664945

RESUMO

BACKGROUND: Sexually transmitted infections (STIs) is a global health problem with increased risk and morbidities during pregnancy. This study investigated the magnitude of viral STIs among pregnant women from three rural hospitals/clinics providing antenatal care in Mwanza region, Tanzania. METHODS: Between February and May 2018, a total of 499 pregnant women were enrolled and tested for Human immunodeficiency virus (HIV), Herpes simplex virus-2 (HSV-2), Hepatitis B virus (HBV) and Hepatitis C virus (HCV) using rapid immunochromatographic tests and for syphilis using non-treponemal and treponemal antibody test. RESULTS: The median age of enrolled women was 25 (IQR: 22-31) years. Seventy eight (15.6, 95% CI: 12-18) of women tested had at least one sexually transmitted viral infection. Specific prevalence of HIV, HBV, HCV, HSV-2 IgG and HSV-2 IgM were found to be 25(5.0%), 29(5.8%), 2(0.4%), 188(37.7%) and 24(4.8%), respectively. The odds of having viral infection was significantly high among women with positive T. pallidum serostatus (adjusted odd ratio (aOR): 3.24, 95%CI; 1.2-85). By multivariable logistic regression analysis, history of STIs predicted HSV-2 IgM seropositivity (aOR: 3.70, 95%CI: 1.43-9.62) while parity (aOR: 1.23, 95%CI: 1.04-1.46) predicted HBV infection and syphilis positive results (aOR: 8.63, 95%CI: 2.81-26.45) predicted HIV infection. CONCLUSION: A significant proportion of pregnant women in rural areas of Mwanza region has at least one sexually transmitted viral infection which is independently predicted by positive T. pallidum serostatus. The strengthening and expansion of ANC screening package to include screening of STIs will ultimately reduce the viral STIs among pregnant women hence reduce associated morbidities and mortalities.


Assuntos
Infecções por HIV , Complicações Infecciosas na Gravidez , Saúde da População Rural/estatística & dados numéricos , Infecções Sexualmente Transmissíveis , Sífilis , Viroses , Adulto , Feminino , Infecções por HIV/diagnóstico , Infecções por HIV/epidemiologia , Humanos , Gravidez , Complicações Infecciosas na Gravidez/classificação , Complicações Infecciosas na Gravidez/diagnóstico , Complicações Infecciosas na Gravidez/epidemiologia , Infecções Sexualmente Transmissíveis/classificação , Infecções Sexualmente Transmissíveis/diagnóstico , Infecções Sexualmente Transmissíveis/epidemiologia , Sífilis/diagnóstico , Sífilis/epidemiologia , Sorodiagnóstico da Sífilis/métodos , Sorodiagnóstico da Sífilis/estatística & dados numéricos , Tanzânia/epidemiologia , Treponema pallidum/isolamento & purificação , Viroses/classificação , Viroses/diagnóstico , Viroses/epidemiologia
9.
J Invertebr Pathol ; 147: 136-144, 2017 07.
Artigo em Inglês | MEDLINE | ID: mdl-27993618

RESUMO

Metagenomic and electron microscopy studies confirm that the coral microbiome contains a rich diversity and abundance of viruses. While there have been no definitive tests of disease causation by viruses in corals, viruses have been implicated as coral pathogens in a number of studies. Growing evidence also indicates that latent viral infections can compromise the algal symbionts under environmental stress and may be involved in the coral bleaching response. Conversely, bacteriophages and archaeal phage viruses are abundant in the microbiome of healthy corals and are likely to be involved in complex ecological networks, genetic material transfer and selective co-evolution within the surface mucus layers and tissues. The relative importance of viral control of bacterial and archaeal populations is unknown, but they are almost certain to be exerting some level of control on the composition and maintenance of the coral microbiome. While rapid leaps in the capability to detect viruses have been made due to advances in metagenomics and bioinformatics, these approaches need now to be integrated with in vitro culture and challenge experiments to assess the functional roles of viruses in health and disease, and it is imperative that interactions with other members of the coral microbiome are taken into account when assessing disease causation.


Assuntos
Antozoários/virologia , Animais , Biodiversidade , Variação Genética , Microbiota/genética , Simbiose , Viroses/classificação , Viroses/epidemiologia
11.
J Autoimmun ; 48-49: 34-7, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24486119

RESUMO

The cornerstone of adult onset Still's disease is the triad of daily fever, arthritis and rash. This syndrome remains enigmatic and most often a disease of exclusion. There are both musculoskeletal as well as systemic features. More importantly, reactive hemophagocytic syndrome may occur in patients. In this review we attempt to place this syndrome in perspective, including data on geoepidemiology, clinical and laboratory features.


Assuntos
Doença de Still de Início Tardio/classificação , Doença de Still de Início Tardio/diagnóstico , Artrite/classificação , Artrite/diagnóstico , Doenças Autoimunes/classificação , Doenças Autoimunes/diagnóstico , Doenças Autoimunes/imunologia , Bacteriemia/classificação , Bacteriemia/diagnóstico , Bacteriemia/imunologia , Diagnóstico Tardio , Diagnóstico Diferencial , Exantema/classificação , Exantema/diagnóstico , Febre de Causa Desconhecida/classificação , Febre de Causa Desconhecida/diagnóstico , Humanos , Inflamação/classificação , Inflamação/diagnóstico , Inflamação/imunologia , Inflamação/patologia , Linfo-Histiocitose Hemofagocítica/classificação , Linfo-Histiocitose Hemofagocítica/diagnóstico , Linfo-Histiocitose Hemofagocítica/imunologia , Linfo-Histiocitose Hemofagocítica/patologia , Anormalidades Musculoesqueléticas/classificação , Anormalidades Musculoesqueléticas/diagnóstico , Anormalidades Musculoesqueléticas/imunologia , Anormalidades Musculoesqueléticas/patologia , Estudos Retrospectivos , Doença de Still de Início Tardio/imunologia , Doença de Still de Início Tardio/patologia , Viroses/classificação , Viroses/diagnóstico , Viroses/imunologia
12.
Skinmed ; 12(2): 114-5, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24933853

RESUMO

A 50-year-old heterosexual, HIV-negative man presented with a giant anal condyloma (Figure). He had iron deficiency anemia, a slow-growing anal wart for many years, and intermittent bleeding and pruritus. Esophagogastroduodenoscopy and colonoscopy findings were normal. Endoscopic ultrasound of the anorectum showed no anal sphincter involvement, and computed tomography did not reveal any pelvic inguinal lymph nodes. Wide-staged excision was performed and the patient recovered well with resolution of symptoms and no local recurrence at 1-year follow-up. Final pathology confirmed human papillomavirus (HPV) 6 strain and a giant condyloma acuminatum with mild atypia and no malignancy. Further examination of his oropharynx showed additional small HPV lesions, which were removed locally.


Assuntos
Neoplasias do Ânus/diagnóstico , Tumor de Buschke-Lowenstein/diagnóstico , Papillomavirus Humano 6 , Viroses/classificação , Animais , Neoplasias do Ânus/cirurgia , Neoplasias do Ânus/virologia , Tumor de Buschke-Lowenstein/cirurgia , Tumor de Buschke-Lowenstein/virologia , Humanos , Masculino , Pessoa de Meia-Idade , Orofaringe/virologia , Viroses/virologia
13.
Heart Fail Rev ; 18(3): 329-36, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23420041

RESUMO

The aetiology of pericardial effusion has been generally assessed by clinical work-up only, which leaves a large cohort of patients with "idiopathic" effusions virtually undiagnosed. In accordance with the ESC guidelines, this contribution intends to change this attitude. After therapeutic or diagnostic pericardiocentesis of 259 patients with large to moderate pericardial effusions, pericardial fluid, epicardial and pericardial biopsies, and blood samples were analysed by PCR for cardiotropic microbial agents. Cytology, histology, immunohistology of tissue and fluids and laboratory tests were performed. Of the 259 patients, 35 % suffered from an autoreactive aetiology, 28 % suffered from a malignant and 14 % from an infectious cause. Investigating all samples by PCR, we identified viral genomes in 51 (19.7 %) patients, parvovirus B19 (B19 V) being identified in 25 and Epstein-Barr virus (EBV) in 19 cases. In patients with a sole infectious aetiology (n = 36), B19 V was detected in 21 and EBV in 10 cases. When differentiating with regard to the material investigated for the presence of cardiotropic viruses, parvovirus B19 was most often detected in the epicardium and EBV was most frequently detected in the pericardial fluid independent from the final diagnostic categorisation. Bacterial cultures including tests for tuberculosis were all negative. Molecular techniques improve sensitivity, specificity and diagnostic accuracy for the underlying aetiology in pericarditis patients with effusion. The identification of specific viral signatures will help to understand pathogenetic mechanisms in pericarditis and allow to tailor an adequate therapy beyond antiphlogistic treatment.


Assuntos
Genoma Viral , Herpesvirus Humano 4/genética , Parvovirus B19 Humano/genética , Derrame Pericárdico , Viroses/complicações , Adulto , Idoso , Estudos de Coortes , Endoscopia/métodos , Exsudatos e Transudatos/virologia , Feminino , Alemanha/epidemiologia , Humanos , Biópsia Guiada por Imagem/métodos , Masculino , Pessoa de Meia-Idade , Patologia Molecular , Derrame Pericárdico/diagnóstico , Derrame Pericárdico/epidemiologia , Derrame Pericárdico/etiologia , Derrame Pericárdico/fisiopatologia , Derrame Pericárdico/virologia , Pericardiocentese/métodos , Pericárdio/patologia , Pericárdio/virologia , Prevalência , Índice de Gravidade de Doença , Viroses/classificação , Viroses/epidemiologia
14.
Przegl Epidemiol ; 67(2): 171-9, 301-5, 2013.
Artigo em Inglês, Polonês | MEDLINE | ID: mdl-24040711

RESUMO

UNLABELLED: The aim of the study was assessment of the epidemiological situation of infectious and parasitic diseases in Poland in 2011 MATERIALS AND METHODS: The main source of data to develop the statistical overview was the annual bulletin "Infectious diseases in Poland in 2011," and "Vaccinations in Poland in 2011,"/NIPH-NIH, CSI, 2011 and information contained in the articles of epidemiological journal in which authors depth discussion of the epidemiological situation of 27 diseases or groups of diseases. Data on deaths are based on the statements of the Department of the Central Statistical Office of Demographic Studies. RESULTS: Upper respiratory tract infection classified as "influenza and influenza-like illness" in 2011, were reported in a total number of 1,156,357 cases, which was an 108.0% increase of incidence as compared with 2010. and in relation to the median of the years 2005 - 2009 of 205.9%. In 2011, food infections dominated among the bacterial infections caused by Salmonella, with the continuing decline of incidence and fraction of salmonellosis among other etiologies. Among the diseases that can be prevented by vaccination it was reported 30.7% increase in the incidence of pertussis. In relation to the median of the years 2005-2009 is a decrease of 16.9%. A downward trend in the incidence of mumps was maintained. As compared to 2010, the incidence decreased by 7.0%. When compared to the median of the years 2005 to 2009 the decline was 38.3%. In relation to the median of the years 2005-2009 there have been a decrease of the number of rubella cases by 67.7% and there have been no reported cases of congenital rubella. A further decline in the incidence of invasive disease caused by H. influenzae was observed. The incidence of tuberculosis in 2011 increased as compared to the previous year from 19.7 to 22/100,000 in respect to all forms of tuberculosis, and pulmonary tuberculosis from 18.3 to 20.5/100,000. The number of newly diagnosed HIV-infected persons also increased. In 2011 it was reported 1,105 cases (2.87/100,000), compared with the previous year, an increase of 14.8%. In 2011, there were reported 221 cases (0.57/100,000) of tick-borne encephalitis, i.e. by 25.5% less than in the previous year, the incidence of viral meningitis decreased by 11.8%. In 2011, there were no cases of especially dangerous infectious diseases: plague, anthrax, diphtheria, polio, rabies and viral hemorrhagic fevers besides dengue, of which 5 cases acquired in endemic areas were reported to the epidemiological surveillance. Due to infectious and parasitic diseases in 2011, died in Poland 3,408 people total. The share of deaths from these causes in the total number of deaths was 0.91%, and the mortality rate--8.8 per 100,000 population, 52.0% of all deaths were due to sepsis.


Assuntos
Infecções Bacterianas/epidemiologia , Doenças Transmissíveis/epidemiologia , Notificação de Doenças/estatística & dados numéricos , Surtos de Doenças/estatística & dados numéricos , Viroses/epidemiologia , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Infecções Bacterianas/classificação , Criança , Pré-Escolar , Doenças Transmissíveis/classificação , Feminino , Humanos , Incidência , Lactente , Recém-Nascido , Masculino , Pessoa de Meia-Idade , Polônia/epidemiologia , Prevenção Primária/estatística & dados numéricos , Sistema de Registros/estatística & dados numéricos , Fatores de Risco , População Rural/estatística & dados numéricos , População Urbana/estatística & dados numéricos , Viroses/classificação
15.
Przegl Epidemiol ; 66(2): 175-84, 2012.
Artigo em Polonês | MEDLINE | ID: mdl-23101201

RESUMO

UNLABELLED: The purpose of the study is assessment of the epidemiological condition of infectious diseases in Poland in 2010, especially in comparison with 2009 and the years 2004-2008. MATERIAL AND METHODS: The evaluation of the epidemiological situation of infectious diseases in Poland was based on analysis of data: published in the annual bulletin "Infectious diseases in Poland in 2010" and "Vaccinations in Poland in 2010"/NIPH-NIH, GIS, 2011, the data contained in 27 articles prepared for publication in the Chronicle of epidemiology for 2010; data of Demographic Research Department of the central Statistical Office (GUS) for deaths from infectious and parasitic diseases registered in 2010 and selected earlier years. RESULTS: The most common group of diseases were respiratory diseases--despite a significant relative to 2009, a decrease of 49.1% of cases of influenza and flu-like disease. Still a major epidemiological problem in Poland is food poisoning and foodborne infections--despite the downward trend in the incidence of salmonellosis. In 2010, 9 732 cases were reported, and the incidence of salmonellosis was 25.5 to 100 000. There was an increase of gastro-intestinal infections, caused by viruses, compared to the median of the years 2004-2008 by 58.1%. Particularly important is epidemiological surveillance of the diseases covered by the immunization program. Their situation can be assessed as satisfactory. However, special attention is paid to the spread of viral hepatitis B and C, in which there was an increased incidence, respectively, by 10% and 2%. Decreased by 5.3% the number of newly registered cases of HIV infection. In 2010, total 3 044 people died in Poland due to infectious and parasitic diseases. The share of deaths from these diseases in the total number of deaths in Poland (378 478) was 0.80% - 8 deaths per 100 000. and were comparable to the data for 2009 In the last decade increased mortality due to infectious diseases was observerd, mainly due to the increase in diagnosed cases of sepsis. CONCLUSIONS: Infectious diseases, although a small part in the overall statistics of deaths, have not ceased to be a serious public health problem. As regards epidemiological surveillance is necessary to continue the legislative work on improving its sensitivity and increase microbiologically confirmed diagnoses.


Assuntos
Infecções Bacterianas/epidemiologia , Doenças Transmissíveis/epidemiologia , Notificação de Doenças/estatística & dados numéricos , Surtos de Doenças/estatística & dados numéricos , Viroses/epidemiologia , Adolescente , Adulto , Distribuição por Idade , Idoso , Idoso de 80 Anos ou mais , Infecções Bacterianas/classificação , Criança , Pré-Escolar , Doenças Transmissíveis/classificação , Feminino , Humanos , Incidência , Lactente , Recém-Nascido , Masculino , Pessoa de Meia-Idade , Polônia/epidemiologia , Prevenção Primária/estatística & dados numéricos , Sistema de Registros , Fatores de Risco , Viroses/classificação
16.
Am J Trop Med Hyg ; 106(2): 610-622, 2022 01 10.
Artigo em Inglês | MEDLINE | ID: mdl-35008051

RESUMO

Mosquitoes were collected for 12 consecutive months beginning June 2016, from 11 locations in the Florida Everglades, Collier County, and tested for viruses by isolation in Vero cells and subsequent identification. One species complex and 31 species of mosquitoes were identified from 668,809 specimens. Ochlerotatus taeniorhynchus comprised 72.2% of the collection. Other notable species were Anopheles crucians complex, Culex nigripalpus, Cx. erraticus, and Cx. cedecei. Seven species of virus were identified from 110 isolations: Everglades, Gumbo Limbo, Mahogany Hammock, Pahayokee, Shark River, Tensaw, and West Nile viruses. Everglades, West Nile, Tensaw, and Mahogany Hammock viruses were most frequently isolated. Largest numbers of viruses were identified from Cx. cedecei, Cx. nigripalpus, and An. crucians complex. Five species of virus were isolated from Cx. cedecei. Viruses were isolated from mangrove, cypress swamp, hardwood hammock, and sawgrass habitats. West Nile virus was isolated August through October when Cx. nigripalpus was most abundant. Everglades virus was the most frequently isolated virus from nine species of mosquitoes collected from June through August. Tensaw virus was isolated primarily from Anopheles species. Isolations were made in July, August, January, February, and April, suggesting that this virus may be present in host-seeking mosquitoes throughout the year. Mahogany Hammock, Shark River, Gumbo Limbo, and Pahayokee viruses were isolated primarily from Cx. cedecei from June through December. Shotgun metagenomic sequencing was used to document that seven pools of Cx. cedecei were infected with two arboviruses. As communities expand into the Everglades, more humans will become exposed to arboviruses.


Assuntos
Culicidae/classificação , Culicidae/virologia , Mosquitos Vetores/classificação , Mosquitos Vetores/virologia , RNA Viral/isolamento & purificação , Doenças Transmitidas por Vetores/virologia , Viroses/classificação , Animais , Ecossistema , Florida , Filogenia , Estações do Ano
17.
BMC Bioinformatics ; 12: 96, 2011 Apr 13.
Artigo em Inglês | MEDLINE | ID: mdl-21489240

RESUMO

BACKGROUND: Viral zoonosis, the transmission of a virus from its primary vertebrate reservoir species to humans, requires ubiquitous cellular proteins known as receptor proteins. Zoonosis can occur not only through direct transmission from vertebrates to humans, but also through intermediate reservoirs or other environmental factors. Viruses can be categorized according to genotype (ssDNA, dsDNA, ssRNA and dsRNA viruses). Among them, the RNA viruses exhibit particularly high mutation rates and are especially problematic for this reason. Most zoonotic viruses are RNA viruses that change their envelope proteins to facilitate binding to various receptors of host species. In this study, we sought to predict zoonotic propensity through the analysis of receptor characteristics. We hypothesized that the major barrier to interspecies virus transmission is that receptor sequences vary among species--in other words, that the specific amino acid sequence of the receptor determines the ability of the viral envelope protein to attach to the cell. RESULTS: We analysed host-cell receptor sequences for their hydrophobicity/hydrophilicity characteristics. We then analysed these properties for similarities among receptors of different species and used a statistical discriminant analysis to predict the likelihood of transmission among species. CONCLUSIONS: This study is an attempt to predict zoonosis through simple computational analysis of receptor sequence differences. Our method may be useful in predicting the zoonotic potential of newly discovered viral strains.


Assuntos
Biologia Computacional/métodos , Receptores Virais/análise , Viroses , Zoonoses , Sequência de Aminoácidos , Animais , Humanos , Interações Hidrofóbicas e Hidrofílicas , Viroses/classificação , Viroses/transmissão , Vírus , Zoonoses/classificação , Zoonoses/transmissão
18.
Z Rheumatol ; 70(8): 637-8, 2011 Oct.
Artigo em Alemão | MEDLINE | ID: mdl-21698474

RESUMO

Are viruses responsible for the pain in patients with fibromyalgia? Are viruses the trigger for rheumatoid arthritis? Is chronic fatigue syndrome a viral disease? There are many open questions with few or controversial answers. According to the current state of knowledge on the origin of the pain in fibromyalgia the varied symptomatic of fibromyalgia is triggered by peripheral as well as central mechanisms. Despite the broad spectrum of symptoms the disease is a specific entity which is mainly treated with dual reuptake inhibitors, anticonvulsives, tramadol, selective serotonin reuptake inhibitors, gamma-hydroxybutyrate and dopamine agonists in individually selected combinations.


Assuntos
Fibromialgia/virologia , Viroses/virologia , Diagnóstico Diferencial , Quimioterapia Combinada , Medicina Baseada em Evidências , Fibromialgia/classificação , Fibromialgia/diagnóstico , Fibromialgia/tratamento farmacológico , Humanos , Neuralgia/classificação , Neuralgia/diagnóstico , Neuralgia/tratamento farmacológico , Neuralgia/virologia , Prognóstico , Psicotrópicos/uso terapêutico , Viroses/classificação , Viroses/diagnóstico
19.
Viruses ; 13(6)2021 06 09.
Artigo em Inglês | MEDLINE | ID: mdl-34207524

RESUMO

Cannabis continues to be the most used drug in the world today. Research shows that cannabis use is associated with a wide range of adverse health consequences that may involve almost every physiological and biochemical system including respiratory/pulmonary complications such as chronic cough and emphysema, impairment of immune function, and increased risk of acquiring or transmitting viral infections such as HIV, HCV, and others. The review of published research shows that cannabis use may impair immune function in many instances and thereby exerts an impact on viral infections including human immune deficiency virus (HIV), hepatitis C infection (HCV), and human T-cell lymphotropic type I and II virus (HTLV-I/II). The need for more research is also highlighted in the areas of long-term effects of cannabis use on pulmonary/respiratory diseases, immune dysfunction and the risk of infection transmission, and the molecular/genetic basis of immune dysfunction in chronic cannabis users.


Assuntos
Sistema Imunitário , Abuso de Maconha/imunologia , Abuso de Maconha/virologia , Viroses/etiologia , Infecções por HIV/etiologia , Infecções por HIV/imunologia , Infecções por HTLV-II/etiologia , Infecções por HTLV-II/imunologia , Hepatite C/etiologia , Hepatite C/imunologia , Humanos , Abuso de Maconha/complicações , Viroses/classificação , Viroses/imunologia
20.
Viruses ; 13(4)2021 04 13.
Artigo em Inglês | MEDLINE | ID: mdl-33924398

RESUMO

The emergence of the Zika virus (ZIKV) mirrors its evolutionary nature and, thus, its ability to grow in diversity or complexity (i.e., related to genome, host response, environment changes, tropism, and pathogenicity), leading to it recently joining the circle of closed congenital pathogens. The causal relation of ZIKV to microcephaly is still a much-debated issue. The identification of outbreak foci being in certain endemic urban areas characterized by a high-density population emphasizes that mixed infections might spearhead the recent appearance of a wide range of diseases that were initially attributed to ZIKV. Globally, such coinfections may have both positive and negative effects on viral replication, tropism, host response, and the viral genome. In other words, the possibility of coinfection may necessitate revisiting what is considered to be known regarding the pathogenesis and epidemiology of ZIKV diseases. ZIKV viral coinfections are already being reported with other arboviruses (e.g., chikungunya virus (CHIKV) and dengue virus (DENV)) as well as congenital pathogens (e.g., human immunodeficiency virus (HIV) and cytomegalovirus (HCMV)). However, descriptions of human latent viruses and their impacts on ZIKV disease outcomes in hosts are currently lacking. This review proposes to select some interesting human latent viruses (i.e., herpes simplex virus 2 (HSV-2), Epstein-Barr virus (EBV), human herpesvirus 6 (HHV-6), human parvovirus B19 (B19V), and human papillomavirus (HPV)), whose virological features and co-exposition with ZIKV may provide evidence of the syndemism process, shedding some light on the emergence of the ZIKV-induced global congenital syndrome in South America.


Assuntos
Coinfecção/complicações , Coinfecção/virologia , Microcefalia/etiologia , Viroses/complicações , Infecção por Zika virus/etiologia , Coevolução Biológica , Reservatórios de Doenças/virologia , Humanos , Microcefalia/virologia , América do Sul , Tropismo Viral , Viroses/classificação , Latência Viral , Replicação Viral , Zika virus/patogenicidade , Infecção por Zika virus/congênito
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