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A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
Naccache, Samia N; Federman, Scot; Veeraraghavan, Narayanan; Zaharia, Matei; Lee, Deanna; Samayoa, Erik; Bouquet, Jerome; Greninger, Alexander L; Luk, Ka-Cheung; Enge, Barryett; Wadford, Debra A; Messenger, Sharon L; Genrich, Gillian L; Pellegrino, Kristen; Grard, Gilda; Leroy, Eric; Schneider, Bradley S; Fair, Joseph N; Martínez, Miguel A; Isa, Pavel; Crump, John A; DeRisi, Joseph L; Sittler, Taylor; Hackett, John; Miller, Steve; Chiu, Charles Y.
  • Naccache SN; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Federman S; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Veeraraghavan N; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Zaharia M; Department of Computer Science, University of California, Berkeley, California 94720, USA;
  • Lee D; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Samayoa E; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Bouquet J; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Greninger AL; Department of Biochemistry, UCSF, San Francisco, California 94107, USA;
  • Luk KC; Abbott Diagnostics, Abbott Park, Illinois 60064, USA;
  • Enge B; Viral and Rickettsial Disease Laboratory, California Department of Public Health, Richmond, California 94804, USA;
  • Wadford DA; Viral and Rickettsial Disease Laboratory, California Department of Public Health, Richmond, California 94804, USA;
  • Messenger SL; Viral and Rickettsial Disease Laboratory, California Department of Public Health, Richmond, California 94804, USA;
  • Genrich GL; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA;
  • Pellegrino K; Department of Family and Community Medicine, UCSF, San Francisco, California 94143, USA;
  • Grard G; Viral Emergent Diseases Unit, Centre International de Recherches Médicales de Franceville, Franceville, BP 769, Gabon;
  • Leroy E; Viral Emergent Diseases Unit, Centre International de Recherches Médicales de Franceville, Franceville, BP 769, Gabon;
  • Schneider BS; Metabiota, Inc., San Francisco, California 94104, USA;
  • Fair JN; Metabiota, Inc., San Francisco, California 94104, USA;
  • Martínez MA; Departamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, 62260, Mexico;
  • Isa P; Departamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, 62260, Mexico;
  • Crump JA; Division of Infectious Diseases and International Health and the Duke Global Health Institute, Duke University Medical Center, Durham, North Carolina 27708, USA; Kilimanjaro Christian Medical Centre, Moshi, Kilimanjaro, 7393, Tanzania; Centre for International Health, University of Otago, Dunedin, 9
  • DeRisi JL; Department of Biochemistry, UCSF, San Francisco, California 94107, USA;
  • Sittler T; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA;
  • Hackett J; Abbott Diagnostics, Abbott Park, Illinois 60064, USA;
  • Miller S; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA;
  • Chiu CY; Department of Laboratory Medicine, UCSF, San Francisco, California 94107, USA; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California 94107, USA; Department of Medicine, Division of Infectious Diseases, UCSF, San Francisco, California 94143, USA.
Genome Res ; 24(7): 1180-92, 2014 Jul.
Article en En | MEDLINE | ID: mdl-24899342
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Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Biología Computacional / Metagenómica / Secuenciación de Nucleótidos de Alto Rendimiento Tipo de estudio: Diagnostic_studies / Prognostic_studies Límite: Humans Idioma: En Año: 2014 Tipo del documento: Article
Texto completo
Imprimir
XML
PubMed Links
Search on Google

Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Biología Computacional / Metagenómica / Secuenciación de Nucleótidos de Alto Rendimiento Tipo de estudio: Diagnostic_studies / Prognostic_studies Límite: Humans Idioma: En Año: 2014 Tipo del documento: Article