A Cytoscape app for motif enumeration with ISMAGS.

ABSTRACT

Summary: We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif's symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis. Availability and Implementation The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http//apps.cytoscape.org/apps/ismags. Source code and documentation for ISMAGS are available at https//github.com/biointec/ismags. Source code and documentation for the Cytoscape app are available at https//gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape. Contacts Pieter.Audenaert@intec.ugent.be or Yves.VanDePeer@psb.vib-ugent.be Supplementary information Supplementary data are available at Bioinformatics online.