Canvas SPW: calling de novo copy number variants in pedigrees.
Bioinformatics
; 34(3): 516-518, 2018 02 01.
Article
en En
| MEDLINE
| ID: mdl-29028893
ABSTRACT
Motivation Whole genome sequencing is becoming a diagnostics of choice for the identification of rare inherited and de novo copy number variants in families with various pediatric and late-onset genetic diseases. However, joint variant calling in pedigrees is hampered by the complexity of consensus breakpoint alignment across samples within an arbitrary pedigree structure. Results:
We have developed a new tool, Canvas SPW, for the identification of inherited and de novo copy number variants from pedigree sequencing data. Canvas SPW supports a number of family structures and provides a wide range of scoring and filtering options to automate and streamline identification of de novo variants. Availability and implementation Canvas SPW is available for download from https//github.com/Illumina/canvas. Contact sivakhno@illumina.com. Supplementary information Supplementary data are available at Bioinformatics online.
Texto completo:
1
Banco de datos:
MEDLINE
Asunto principal:
Linaje
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Programas Informáticos
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Análisis de Secuencia de ADN
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Genómica
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Variaciones en el Número de Copia de ADN
Tipo de estudio:
Prognostic_studies
Límite:
Humans
Idioma:
En
Año:
2018
Tipo del documento:
Article