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Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae).
Adams, Seira A; Graham, Natalie R; Holmquist, Anna J; Sheffer, Monica M; Steigerwald, Emma C; Sahasrabudhe, Ruta; Nguyen, Oanh; Beraut, Eric; Fairbairn, Colin; Sacco, Samuel; Seligmann, William; Escalona, Merly; Shaffer, H Bradley; Toffelmier, Erin; Gillespie, Rosemary G.
  • Adams SA; Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.
  • Graham NR; Center for Population Biology, University of California, Davis, CA, United States.
  • Holmquist AJ; Department of Evolution and Ecology, University of California, Davis, CA, United States.
  • Sheffer MM; Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.
  • Steigerwald EC; Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.
  • Sahasrabudhe R; Department of Biology, University of Washington, Seattle, WA, United States.
  • Nguyen O; eScience Institute, University of Washington, Seattle, WA, United States.
  • Beraut E; Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States.
  • Fairbairn C; Museum of Vertebrate Zoology, University of California, Berkeley, CA, United States.
  • Sacco S; DNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.
  • Seligmann W; DNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.
  • Escalona M; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.
  • Shaffer HB; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.
  • Toffelmier E; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.
  • Gillespie RG; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, United States.
J Hered ; 114(4): 395-403, 2023 06 22.
Article en En | MEDLINE | ID: mdl-37042574
ABSTRACT
Climate-driven changes in hydrological regimes are of global importance and are particularly significant in riparian ecosystems. Riparian ecosystems in California provide refuge to many native and vulnerable species within a xeric landscape. California Tetragnatha spiders play a key role in riparian ecosystems, serving as a link between terrestrial and aquatic elements. Their tight reliance on water paired with the widespread distributions of many species make them ideal candidates to better understand the relative role of waterways versus geographic distance in shaping the population structure of riparian species. To assist in better understanding population structure, we constructed a reference genome assembly for Tetragnatha versicolor using long-read sequencing, scaffolded with proximity ligation Omni-C data. The near-chromosome-level assembly is comprised of 174 scaffolds spanning 1.06 Gb pairs, with a scaffold N50 of 64.1 Mb pairs and BUSCO completeness of 97.6%. This reference genome will facilitate future study of T. versicolor population structure associated with the rapidly changing environment of California.
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Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Arañas / Ecosistema Límite: Animals Idioma: En Año: 2023 Tipo del documento: Article

Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Arañas / Ecosistema Límite: Animals Idioma: En Año: 2023 Tipo del documento: Article