PyCoMo: a python package for community metabolic model creation and analysis.
Bioinformatics
; 40(4)2024 Mar 29.
Article
en En
| MEDLINE
| ID: mdl-38532295
ABSTRACT
SUMMARY:
PyCoMo is a python package for quick and easy generation of genome-scale compartmentalized community metabolic models that are compliant with current openCOBRA file formats. The resulting models can be used to predict (i) the maximum growth rate at a given abundance profile, (ii) the feasible community compositions at a given growth rate, and (iii) all exchange metabolites and cross-feeding interactions in a community metabolic model independent of the abundance profile; we demonstrate PyCoMo's capability by analysing methane production in a previously published simplified biogas community metabolic model. AVAILABILITY AND IMPLEMENTATION PyCoMo is freely available under an MIT licence at http//github.com/univieCUBE/PyCoMo, the Python Package Index, and Zenodo.
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Programas Informáticos
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En
Año:
2024
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Article