AGML Central: web based gel proteomic infrastructure.
Bioinformatics
; 21(9): 1754-7, 2005 May 01.
Article
em En
| MEDLINE
| ID: mdl-15647304
ABSTRACT
SUMMARY:
AGML Central is a web-based open-source public infrastructure for dissemination of two-dimensional Gel Electrophoresis (2-DE) proteomics data in AGML format (Annotated Gel Markup Language). It includes a growing collection of converters from proprietary formats such as those produced by PDQUEST (BioRad), PHORETIX 2-D (Nonlinear Dynamics) and Melanie (GenBio SA). The resulting unifying AGML formatted entry, with or without the raw gel images, is optionally stored in a database for future reference. AGML Central was developed to provide a common platform for data dissemination and development of 2-DE data analysis tools. This resource responds to an increasing use of AGML for 2-DE public source data representation which requires automated tools for conversion from proprietary formats. Conversion and short-term storage is made publicly available, permanent storage requires prior registering. A JAVA applet visualizer was developed to visualize the AGML data with cross-reference links. In order to facilitate automated access a SOAP web service is also included in the AGML Central infrastructure.AVAILABILITY:
http//bioinformatics.musc.edu/agmlcentral.
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Base de dados:
MEDLINE
Assunto principal:
Sistemas de Gerenciamento de Base de Dados
/
Interface Usuário-Computador
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Eletroforese em Gel Bidimensional
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Armazenamento e Recuperação da Informação
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Internet
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Proteoma
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Bases de Dados de Proteínas
Idioma:
En
Ano de publicação:
2005
Tipo de documento:
Article