GeneReporter--sequence-based document retrieval and annotation.
Bioinformatics
; 27(7): 1034-5, 2011 Apr 01.
Article
em En
| MEDLINE
| ID: mdl-21310745
ABSTRACT
UNLABELLED GeneReporter is a web tool that reports functional information and relevant literature on a protein-coding sequence of interest. Its purpose is to support both manual genome annotation and document retrieval. PubMed references corresponding to a sequence are detected by the extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains, potential cofactors, structure, function, cellular localization, metabolic contribution and corresponding DNA binding sites complement the information on a given gene product of interest. AVAILABILITY AND IMPLEMENTATION GeneReporter is available at http//www.genereporter.tu-bs.de. The web site integrates databases and analysis tools as SOAP-based web services from the EBI (European Bioinformatics Institute) and NCBI (National Center for Biotechnology Information).
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Software
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Análise de Sequência de Proteína
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Anotação de Sequência Molecular
Idioma:
En
Ano de publicação:
2011
Tipo de documento:
Article