Automatic classification of sentences to support Evidence Based Medicine.
BMC Bioinformatics
; 12 Suppl 2: S5, 2011 Mar 29.
Article
em En
| MEDLINE
| ID: mdl-21489224
ABSTRACT
AIM:
Given a set of pre-defined medical categories used in Evidence Based Medicine, we aim to automatically annotate sentences in medical abstracts with these labels.METHOD:
We constructed a corpus of 1,000 medical abstracts annotated by hand with specified medical categories (e.g. Intervention, Outcome). We explored the use of various features based on lexical, semantic, structural, and sequential information in the data, using Conditional Random Fields (CRF) for classification.RESULTS:
For the classification tasks over all labels, our systems achieved micro-averaged f-scores of 80.9% and 66.9% over datasets of structured and unstructured abstracts respectively, using sequential features. In labeling only the key sentences, our systems produced f-scores of 89.3% and 74.0% over structured and unstructured abstracts respectively, using the same sequential features. The results over an external dataset were lower (f-scores of 63.1% for all labels, and 83.8% for key sentences).CONCLUSIONS:
Of the features we used, the best for classifying any given sentence in an abstract were based on unigrams, section headings, and sequential information from preceding sentences. These features resulted in improved performance over a simple bag-of-words approach, and outperformed feature sets used in previous work.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Armazenamento e Recuperação da Informação
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Medicina Baseada em Evidências
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Indexação e Redação de Resumos
Idioma:
En
Ano de publicação:
2011
Tipo de documento:
Article