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Site-specific analysis of heteronuclear Overhauser effects in microcrystalline proteins.
del Amo, Juan Miguel Lopez; Agarwal, Vipin; Sarkar, Riddhiman; Porter, Justin; Asami, Sam; Rübbelke, Martin; Fink, Uwe; Xue, Yi; Lange, Oliver F; Reif, Bernd.
Afiliação
  • del Amo JM; Munich Center for Integrated Protein Science (CIPS-M) at Department Chemie, Technische Universität München (TUM), Lichtenbergstr. 4, 85747, Garching, Germany.
J Biomol NMR ; 59(4): 241-9, 2014 Aug.
Article em En | MEDLINE | ID: mdl-24989039
Relaxation parameters such as longitudinal relaxation are susceptible to artifacts such as spin diffusion, and can be affected by paramagnetic impurities as e.g. oxygen, which make a quantitative interpretation difficult. We present here the site-specific measurement of [(1)H](13)C and [(1)H](15)N heteronuclear rates in an immobilized protein. For methyls, a strong effect is expected due to the three-fold rotation of the methyl group. Quantification of the [(1)H](13)C heteronuclear NOE in combination with (13)C-R 1 can yield a more accurate analysis of side chain motional parameters. The observation of significant [(1)H](15)N heteronuclear NOEs for certain backbone amides, as well as for specific asparagine/glutamine sidechain amides is consistent with MD simulations. The measurement of site-specific heteronuclear NOEs is enabled by the use of highly deuterated microcrystalline protein samples in which spin diffusion is reduced in comparison to protonated samples.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Espectrina / Ressonância Magnética Nuclear Biomolecular / Proteínas Aviárias Limite: Animals Idioma: En Ano de publicação: 2014 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Espectrina / Ressonância Magnética Nuclear Biomolecular / Proteínas Aviárias Limite: Animals Idioma: En Ano de publicação: 2014 Tipo de documento: Article