xiNET: cross-link network maps with residue resolution.
Mol Cell Proteomics
; 14(4): 1137-47, 2015 Apr.
Article
em En
| MEDLINE
| ID: mdl-25648531
ABSTRACT
UNLABELLED xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. AVAILABILITY:
xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http//crosslinkviewer.org/ or by downloading the software from http//github.com/colin-combe/crosslink-viewer and running it locally.
Texto completo:
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Base de dados:
MEDLINE
Assunto principal:
Software
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Reagentes de Ligações Cruzadas
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Mapas de Interação de Proteínas
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Aminoácidos
Idioma:
En
Ano de publicação:
2015
Tipo de documento:
Article