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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Kohler, Annegret; Kuo, Alan; Nagy, Laszlo G; Morin, Emmanuelle; Barry, Kerrie W; Buscot, Francois; Canbäck, Björn; Choi, Cindy; Cichocki, Nicolas; Clum, Alicia; Colpaert, Jan; Copeland, Alex; Costa, Mauricio D; Doré, Jeanne; Floudas, Dimitrios; Gay, Gilles; Girlanda, Mariangela; Henrissat, Bernard; Herrmann, Sylvie; Hess, Jaqueline; Högberg, Nils; Johansson, Tomas; Khouja, Hassine-Radhouane; LaButti, Kurt; Lahrmann, Urs; Levasseur, Anthony; Lindquist, Erika A; Lipzen, Anna; Marmeisse, Roland; Martino, Elena; Murat, Claude; Ngan, Chew Y; Nehls, Uwe; Plett, Jonathan M; Pringle, Anne; Ohm, Robin A; Perotto, Silvia; Peter, Martina; Riley, Robert; Rineau, Francois; Ruytinx, Joske; Salamov, Asaf; Shah, Firoz; Sun, Hui; Tarkka, Mika; Tritt, Andrew; Veneault-Fourrey, Claire; Zuccaro, Alga; Tunlid, Anders; Grigoriev, Igor V.
Afiliação
  • Kohler A; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.
  • Kuo A; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Nagy LG; 1] Department of Biology, Clark University, Worcester, Massachusetts, USA. [2] Synthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary.
  • Morin E; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.
  • Barry KW; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Buscot F; 1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
  • Canbäck B; Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.
  • Choi C; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Cichocki N; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.
  • Clum A; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Colpaert J; Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.
  • Copeland A; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Costa MD; Departamento de Microbiologia, Bolsista do Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Universidade Federal de Viçosa, Viçosa, Brazil.
  • Doré J; UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.
  • Floudas D; Department of Biology, Clark University, Worcester, Massachusetts, USA.
  • Gay G; UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.
  • Girlanda M; Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.
  • Henrissat B; 1] CNRS, UMR 7257, Aix-Marseille Université, Marseille, France. [2] Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Marseille, France. [3] Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
  • Herrmann S; 1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
  • Hess J; Department of Biosciences, University of Oslo, Oslo, Norway.
  • Högberg N; Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
  • Johansson T; Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.
  • Khouja HR; Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.
  • LaButti K; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Lahrmann U; Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.
  • Levasseur A; CNRS, UMR 7257, Aix-Marseille Université, Marseille, France.
  • Lindquist EA; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Lipzen A; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Marmeisse R; UMR CNRS 5557, Unité Sous Contrat INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne, France.
  • Martino E; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.
  • Murat C; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.
  • Ngan CY; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Nehls U; Department of Ecology, Biology/Chemistry, Botany, University of Bremen, Bremen, Germany.
  • Plett JM; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.
  • Pringle A; Harvard Forest, Harvard University, Petersham, Massachusetts, USA.
  • Ohm RA; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Perotto S; Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, Torino, Italy.
  • Peter M; Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Forest Dynamics, Birmensdorf, Switzerland.
  • Riley R; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Rineau F; Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.
  • Ruytinx J; Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium.
  • Salamov A; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Shah F; Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.
  • Sun H; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Tarkka M; 1] Department of Soil Ecology, Helmholtz Centre for Environmental Research-Helmholtz Zentrum fuer Umweltforschung, Halle, Germany. [2] German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
  • Tritt A; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
  • Veneault-Fourrey C; 1] Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France. [2] University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.
  • Zuccaro A; 1] Department of Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. [2] University of Cologne, Botanical Institute, Cluster of Excellence on Plant Sciences (CEPLAS), Cologne, Germany.
  • Tunlid A; Department of Biology, Microbial Ecology Group, Lund University, Lund, Sweden.
  • Grigoriev IV; US Department of Energy Joint Genome Institute (JGI), Walnut Creek, California, USA.
Nat Genet ; 47(4): 410-5, 2015 Apr.
Article em En | MEDLINE | ID: mdl-25706625
ABSTRACT
To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall-degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7-38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Seleção Genética / Simbiose / Virulência / Genoma Fúngico / Micorrizas Idioma: En Ano de publicação: 2015 Tipo de documento: Article
Texto completo
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PubMed Links
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Seleção Genética / Simbiose / Virulência / Genoma Fúngico / Micorrizas Idioma: En Ano de publicação: 2015 Tipo de documento: Article