iTagPlot: an accurate computation and interactive drawing tool for tag density plot.
Bioinformatics
; 31(14): 2384-7, 2015 Jul 15.
Article
em En
| MEDLINE
| ID: mdl-25792550
ABSTRACT
MOTIVATION Tag density plots are very important to intuitively reveal biological phenomena from capture-based sequencing data by visualizing the normalized read depth in a region. RESULTS:
We have developed iTagPlot to compute tag density across functional features in parallel using multicores and a grid engine and to interactively explore it in a graphical user interface. It allows us to stratify features by defining groups based on biological function and measurement, summary statistics and unsupervised clustering. AVAILABILITY AND IMPLEMENTATION http//sourceforge.net/projects/itagplot/.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Software
/
Sitios de Sequências Rotuladas
Limite:
Humans
Idioma:
En
Ano de publicação:
2015
Tipo de documento:
Article