Analysis of Genotyping-by-Sequencing (GBS) Data.

Kagale, Sateesh; Koh, Chushin; Clarke, Wayne E; Bollina, Venkatesh; Parkin, Isobel A P; Sharpe, Andrew G

Kagale, Sateesh; Koh, Chushin; Clarke, Wayne E; Bollina, Venkatesh; Parkin, Isobel A P; Sharpe, Andrew G.

Afiliação

Kagale S; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK, Canada, S7N 0W9.
Koh C; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK, Canada, S7N 0W9.
Clarke WE; Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada, S7N 0X2.
Bollina V; Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada, S7N 0X2.
Parkin IA; Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada, S7N 0X2.
Sharpe AG; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK, Canada, S7N 0W9. andrew.sharpe@nrc-cnrc.gc.ca.

Methods Mol Biol ; 1374: 269-84, 2016.

Article em En | MEDLINE | ID: mdl-26519412

Assuntos

Biologia Computacional/métodos; Genômica/métodos; Técnicas de Genotipagem; Software; Navegador

Palavras-chave

Bowtie; Demultiplexing, Read map ping; GATK; GBS; Genetic variation; Genotyping; Genotyping -by-sequencing; Haplotype; HaplotypeCaller; Imputation; InDels; Minor allele frequency; Next generation sequencing; RAD-seq; Reduced representation sequencing; SAMtools; Single nucleotide polymorphism; Trimmomatic; UnifiedGenotyper

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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Biologia Computacional / Genômica / Técnicas de Genotipagem Idioma: En Ano de publicação: 2016 Tipo de documento: Article

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