Construction of a versatile SNP array for pyramiding useful genes of rice.
Plant Sci
; 242: 131-139, 2016 Jan.
Article
em En
| MEDLINE
| ID: mdl-26566831
ABSTRACT
DNA marker-assisted selection (MAS) has become an indispensable component of breeding. Single nucleotide polymorphisms (SNP) are the most frequent polymorphism in the rice genome. However, SNP markers are not readily employed in MAS because of limitations in genotyping platforms. Here the authors report a Golden Gate SNP array that targets specific genes controlling yield-related traits and biotic stress resistance in rice. As a first step, the SNP genotypes were surveyed in 31 parental varieties using the Affymetrix Rice 44K SNP microarray. The haplotype information for 16 target genes was then converted to the Golden Gate platform with 143-plex markers. Haplotypes for the 14 useful allele are unique and can discriminate among all other varieties. The genotyping consistency between the Affymetrix microarray and the Golden Gate array was 92.8%, and the accuracy of the Golden Gate array was confirmed in 3 F2 segregating populations. The concept of the haplotype-based selection by using the constructed SNP array was proofed.
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Base de dados:
MEDLINE
Assunto principal:
Oryza
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Haplótipos
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Genes de Plantas
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Polimorfismo de Nucleotídeo Único
Idioma:
En
Ano de publicação:
2016
Tipo de documento:
Article