Near-optimal probabilistic RNA-seq quantification.
Nat Biotechnol
; 34(5): 525-7, 2016 05.
Article
em En
| MEDLINE
| ID: mdl-27043002
ABSTRACT
We present kallisto, an RNA-seq quantification program that is two orders of magnitude faster than previous approaches and achieves similar accuracy. Kallisto pseudoaligns reads to a reference, producing a list of transcripts that are compatible with each read while avoiding alignment of individual bases. We use kallisto to analyze 30 million unaligned paired-end RNA-seq reads in <10 min on a standard laptop computer. This removes a major computational bottleneck in RNA-seq analysis.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Algoritmos
/
Software
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RNA
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Modelos Estatísticos
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Análise de Sequência de RNA
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Sequenciamento de Nucleotídeos em Larga Escala
Tipo de estudo:
Diagnostic_studies
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Prognostic_studies
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Risk_factors_studies
Idioma:
En
Ano de publicação:
2016
Tipo de documento:
Article