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Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data.
Masetti, Matteo; Musiani, Francesco; Bernetti, Mattia; Falchi, Federico; Cavalli, Andrea; Ciurli, Stefano; Recanatini, Maurizio.
Afiliação
  • Masetti M; Laboratory of Computational Medicinal Chemistry, Department of Pharmacy and Biotechnology, Alma Mater Studiorum - Università di Bologna, Via Belmeloro 6, Bologna, I-40126, Italy.
  • Musiani F; Laboratory of Bioinorganic Chemistry, Department of Pharmacy and Biotechnology, Alma Mater Studiorum - Università di Bologna, Viale G. Fanin 40, Bologna, I-40127, Italy.
  • Bernetti M; Laboratory of Computational Medicinal Chemistry, Department of Pharmacy and Biotechnology, Alma Mater Studiorum - Università di Bologna, Via Belmeloro 6, Bologna, I-40126, Italy.
  • Falchi F; Compunet, Istituto Italiano di Tecnologia, Via Morego 30, Genova, I-16163, Italy.
  • Cavalli A; Compunet, Istituto Italiano di Tecnologia, Via Morego 30, Genova, I-16163, Italy.
  • Ciurli S; Laboratory of Computational Medicinal Chemistry, Department of Pharmacy and Biotechnology, Alma Mater Studiorum - Università di Bologna, Via Belmeloro 6, Bologna, I-40126, Italy.
  • Recanatini M; Compunet, Istituto Italiano di Tecnologia, Via Morego 30, Genova, I-16163, Italy.
J Comput Chem ; 38(21): 1834-1843, 2017 06 05.
Article em En | MEDLINE | ID: mdl-28558120
Force-field parameters are developed for a multisite model of Ni(II) ions to be used in molecular dynamics simulations combined to enhanced sampling methods. The performances of two charge-partitioning schemes are validated by taking into account structural, thermodynamic, and kinetic observables. One of the two models, featuring partial charges on the dummy atoms only, matches both Ni(II) free energy of solvation and water exchange rates. Such model is particularly suited to study complexation events at a fully dynamic description. © 2017 Wiley Periodicals, Inc.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2017 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2017 Tipo de documento: Article