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InterMineR: an R package for InterMine databases.
Kyritsis, Konstantinos A; Wang, Bing; Sullivan, Julie; Lyne, Rachel; Micklem, Gos.
Afiliação
  • Kyritsis KA; Laboratory of Pharmacology, School of Pharmacy, Aristotle University of Thessaloniki, Thessaloniki GR-54124, Greece.
  • Wang B; Department of Genetics, University of Cambridge, Cambridge, UK.
  • Sullivan J; Cambridge Systems Biology Centre, Cambridge, UK.
  • Lyne R; Department of Genetics, University of Cambridge, Cambridge, UK.
  • Micklem G; Cambridge Systems Biology Centre, Cambridge, UK.
Bioinformatics ; 35(17): 3206-3207, 2019 09 01.
Article em En | MEDLINE | ID: mdl-30668641
SUMMARY: InterMineR is a package designed to provide a flexible interface between the R programming environment and biological databases built using the InterMine platform. The package offers access to the flexible query builder and the library of term enrichment tools of the InterMine framework, as well as interoperability with other Bioconductor packages. This facilitates automation of data retrieval tasks as well as downstream analysis with existing statistical tools in the R environment. AVAILABILITY AND IMPLEMENTATION: InterMineR is free and open source, released under the LGPL licence and available from the Bioconductor project and Github (https://bioconductor.org/packages/release/bioc/html/InterMineR.html, https://github.com/intermine/interMineR). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software Idioma: En Ano de publicação: 2019 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software Idioma: En Ano de publicação: 2019 Tipo de documento: Article