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DESE: estimating driver tissues by selective expression of genes associated with complex diseases or traits.
Jiang, Lin; Xue, Chao; Dai, Sheng; Chen, Shangzhen; Chen, Peikai; Sham, Pak Chung; Wang, Haijun; Li, Miaoxin.
Afiliação
  • Jiang L; Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China.
  • Xue C; Department of Pituitary Tumour Center, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China.
  • Dai S; Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China.
  • Chen S; Key Laboratory of Tropical Disease Control (SYSU), Ministry of Education, Guangzhou, 510080, China.
  • Chen P; Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China.
  • Sham PC; Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China.
  • Wang H; Department of Psychiatry, The Centre for Genomic Sciences, State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong SAR, China.
  • Li M; Department of Psychiatry, The Centre for Genomic Sciences, State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong SAR, China.
Genome Biol ; 20(1): 233, 2019 11 06.
Article em En | MEDLINE | ID: mdl-31694669
The driver tissues or cell types in which susceptibility genes initiate diseases remain elusive. We develop a unified framework to detect the causal tissues of complex diseases or traits according to selective expression of disease-associated genes in genome-wide association studies (GWASs). This framework consists of three components which run iteratively to produce a converged prioritization list of driver tissues. Additionally, this framework also outputs a list of prioritized genes as a byproduct. We apply the framework to six representative complex diseases or traits with GWAS summary statistics, which leads to the estimation of the lung as an associated tissue of rheumatoid arthritis.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Expressão Gênica / Doença / Predisposição Genética para Doença / Genômica Tipo de estudo: Risk_factors_studies Limite: Humans Idioma: En Ano de publicação: 2019 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Expressão Gênica / Doença / Predisposição Genética para Doença / Genômica Tipo de estudo: Risk_factors_studies Limite: Humans Idioma: En Ano de publicação: 2019 Tipo de documento: Article