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Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve.
Castro, Juan C; Maddox, J Dylan; Rodríguez, Hicler N; Orbe, Richard B; Grandez, Gad E; Feldheim, Kevin A; Cobos, Marianela; Paredes, Jae D; Castro, Carlos G; Marapara, Jorge L; Adrianzén, Pedro M; Braga, Janeth.
Afiliação
  • Castro JC; Unidad Especializada de Biotecnología, Centro de Investigación de Recursos Naturales de la Amazonía (CIRNA), Universidad Nacional de la Amazonia Peruana (UNAP), Iquitos, Perú.
  • Maddox JD; Laboratorio de Biotecnología y Bioenergética (LBB), Universidad Científica del Perú (UCP), Iquitos, Perú.
  • Rodríguez HN; Pritzker Laboratory for Molecular Systematics and Evolution, Field Museum of Natural History, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA.
  • Orbe RB; Environmental Sciences, American Public University System, Charles Town, WV 25414, USA.
  • Grandez GE; Unidad Especializada de Biotecnología, Centro de Investigación de Recursos Naturales de la Amazonía (CIRNA), Universidad Nacional de la Amazonia Peruana (UNAP), Iquitos, Perú.
  • Feldheim KA; Laboratorio de Biotecnología y Bioenergética (LBB), Universidad Científica del Perú (UCP), Iquitos, Perú.
  • Cobos M; Unidad Especializada de Biotecnología, Centro de Investigación de Recursos Naturales de la Amazonía (CIRNA), Universidad Nacional de la Amazonia Peruana (UNAP), Iquitos, Perú.
  • Paredes JD; Unidad Especializada de Biotecnología, Centro de Investigación de Recursos Naturales de la Amazonía (CIRNA), Universidad Nacional de la Amazonia Peruana (UNAP), Iquitos, Perú.
  • Castro CG; Laboratorio de Biotecnología y Bioenergética (LBB), Universidad Científica del Perú (UCP), Iquitos, Perú.
  • Marapara JL; Pritzker Laboratory for Molecular Systematics and Evolution, Field Museum of Natural History, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA.
  • Adrianzén PM; Laboratorio de Biotecnología y Bioenergética (LBB), Universidad Científica del Perú (UCP), Iquitos, Perú.
  • Braga J; Laboratorio de Biotecnología y Bioenergética (LBB), Universidad Científica del Perú (UCP), Iquitos, Perú.
Data Brief ; 30: 105625, 2020 Jun.
Article em En | MEDLINE | ID: mdl-32382622
The white-sands forests or varillales of the Peruvian Amazon are characterized by their distinct physical characteristics, patchy distribution, and endemism [1, 2]. Much research has been conducted on the specialized plant and animal communities that inhabit these ecosystems, yet their soil microbiomes have yet to be studied. Here we provide metagenomic 16S rDNA amplicon data of soil microbiomes from three types of varillales in Allpahuayo-Mishana National Reserve near Iquitos, Peru. Composite soil samples were collected from very low varillal, high-dry varillal, and high-wet varillal. Purified metagenomic DNA was used to prepare and sequence 16S rDNA metagenomic libraries on the Illumina MiqSeq platform. Raw paired-endsequences were analyzed using the Metagenomics RAST server (MG-RAST) and Parallel-Meta3 software and revealed the existence of a high percentage of undiscovered sequences, potentially indicating specialized bacterial communities in these forests. Also, were predicted several metabolic functions in this dataset. The raw sequence data in fastq format is available in the public repository Discover Mendeley Data (https://data.mendeley.com/datasets/syktzxcnp6/2). Also, is available at NCBI's Sequence Read Archive (SRA) with accession numbers SRX7891206 (very low varillal), SRX7891207 (high-dry varillal), and SRX7891208 (high-wet varillal).
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Texto completo: 1 Base de dados: MEDLINE Tipo de estudo: Prognostic_studies / Risk_factors_studies Idioma: En Ano de publicação: 2020 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Tipo de estudo: Prognostic_studies / Risk_factors_studies Idioma: En Ano de publicação: 2020 Tipo de documento: Article