High throughput deep sequencing elucidates the important role of lncRNAs in Foxtail millet response to herbicides.
Genomics
; 112(6): 4463-4473, 2020 11.
Article
em En
| MEDLINE
| ID: mdl-32763352
ABSTRACT
Long non-coding RNAs (lncRNAs) play an important function in plant growth and development as well as response to stresses. However, little information was known in foxtail millet; no study was reported on lncRNAs in plant response to herbicide treatment. In this study, by using deep sequencing and advanced bioinformatic analysis, a total of 2547 lncRNAs were identified, including 787 known and 1760 novel lncRNAs. These lncRNAs are distributed across all 9 chromosomes, and the majority were located in the intergenic region with 1-2 exons. These lncRNAs were differentially expressed between different genotypes under different herbicide treatments. lncRNAs regulate plant growth and development as well as response to herbicide treatments through targeting protein-coding genes that directly relate to chemical metabolism and defense system. Multiple potential target genes and lncRNA-mRNA-miRNA gene networks were discovered. These results elucidate the potential roles of lncRNAs in plant response to herbicides.
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Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Regulação da Expressão Gênica de Plantas
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Setaria (Planta)
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RNA Longo não Codificante
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Herbicidas
Idioma:
En
Ano de publicação:
2020
Tipo de documento:
Article