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Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations.
Giardine, Belinda M; Joly, Philippe; Pissard, Serge; Wajcman, Henri; K Chui, David H; Hardison, Ross C; Patrinos, George P.
Afiliação
  • Giardine BM; The Pennsylvania State University, Center for Computational Biology and Bioinformatics, University Park, PA, USA.
  • Joly P; Biochimie des pathologies érythrocytaires, Laboratoire de Biochimie et Biologie Moléculaire Grand-Est, Groupement hospitalier Est, Hospices Civils de Lyon, Bron, France.
  • Pissard S; Laboratoire Interuniversitaire de Biologie de la Motricité (LIBM) EA7424, Equipe "Biologie vasculaire et du globule rouge'', Université Claude Bernard Lyon 1, COMUE Lyon, France.
  • Wajcman H; Assistance Publique Hopitaux de Paris), Department of Genetics GHU (Groupe Hospitalier Universitaire Henri Mondor) H. Mondor and Institut Mondor de Recherche biomedicale - INSERM U955 eq2, Creteil France.
  • K Chui DH; INSERM U955, CHU Henri Mondor, Creteil, France.
  • Hardison RC; Boston University School of Medicine, Department of Medicine, Pathology and Laboratory Medicine, Boston, MA, USA.
  • Patrinos GP; The Pennsylvania State University, Center for Computational Biology and Bioinformatics, University Park, PA, USA.
Nucleic Acids Res ; 49(D1): D1192-D1196, 2021 01 08.
Article em En | MEDLINE | ID: mdl-33125055
HbVar (http://globin.bx.psu.edu/hbvar) is a widely-used locus-specific database (LSDB) launched 20 years ago by a multi-center academic effort to provide timely information on the numerous genomic variants leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Here, we report several advances for the database. We made clinically relevant updates of HbVar, implemented as additional querying options in the HbVar query page, allowing the user to explore the clinical phenotype of compound heterozygous patients. We also made significant improvements to the HbVar front page, making comparative data querying, analysis and output more user-friendly. We continued to expand and enrich the regular data content, involving 1820 variants, 230 of which are new entries. We also increased the querying potential and expanded the usefulness of HbVar database in the clinical setting. These several additions, expansions and updates should improve the utility of HbVar both for the globin research community and in a clinical setting.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Talassemia / Software / Hemoglobinas / Bases de Dados Genéticas / Mutação Limite: Humans Idioma: En Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Talassemia / Software / Hemoglobinas / Bases de Dados Genéticas / Mutação Limite: Humans Idioma: En Ano de publicação: 2021 Tipo de documento: Article