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The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species.
Cho, Kwang-Soo; Cho, Ji-Hong; Im, Ju-Sung; Choi, Jang-Gyu; Park, Young-Eun; Jang, Dong-Chil; Hong, Su-Young; Park, Tae-Ho.
Afiliação
  • Cho KS; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Cho JH; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Im JS; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Choi JG; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Park YE; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Jang DC; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Hong SY; Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration, Pyeongchang, South Korea.
  • Park TH; Department of Horticulture, Daegu University, Gyeongsan, South Korea.
Mitochondrial DNA B Resour ; 3(2): 755-757, 2018 Jul 11.
Article em En | MEDLINE | ID: mdl-33474312
ABSTRACT
Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2018 Tipo de documento: Article
Texto completo
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XML
PubMed Links
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2018 Tipo de documento: Article