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ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy.
Tangaro, Marco A; Defazio, Giuseppe; Fosso, Bruno; Licciulli, Vito Flavio; Grillo, Giorgio; Donvito, Giacinto; Lavezzo, Enrico; Baruzzo, Giacomo; Pesole, Graziano; Santamaria, Monica.
Afiliação
  • Tangaro MA; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Bari 70126, Italy.
  • Defazio G; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Bari 70126, Italy.
  • Fosso B; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Bari 70126, Italy.
  • Licciulli VF; Institute of Biomedical Technologies, National Research Council, Bari Unit, Bari 70126, Italy.
  • Grillo G; Institute of Biomedical Technologies, National Research Council, Bari Unit, Bari 70126, Italy.
  • Donvito G; National Institute for Nuclear Physics (INFN), Section of Bari, Bari 70126, Italy.
  • Lavezzo E; Department of Molecular Medicine, University of Padova, Padova 35131, Italy.
  • Baruzzo G; Department of Information Engineering, University of Padova, Padova 35131, Italy.
  • Pesole G; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Bari 70126, Italy.
  • Santamaria M; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Bari 70126, Italy.
Bioinformatics ; 37(22): 4253-4254, 2021 11 18.
Article em En | MEDLINE | ID: mdl-34117876
SUMMARY: ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on Internal Transcribed Spacer 1 variants high-throughput sequencing. AVAILABILITY AND IMPLEMENTATION: ITSoneWB has been deployed on the INFN-Bari ReCaS cloud facility and is freely available on the web at http://itsonewb.cloud.ba.infn.it/galaxy. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Eucariotos Idioma: En Ano de publicação: 2021 Tipo de documento: Article
Texto completo
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XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Eucariotos Idioma: En Ano de publicação: 2021 Tipo de documento: Article