Refget: standardized access to reference sequences.
Bioinformatics
; 38(1): 299-300, 2021 12 22.
Article
em En
| MEDLINE
| ID: mdl-34260694
ABSTRACT
MOTIVATION Reference sequences are essential in creating a baseline of knowledge for many common bioinformatics methods, especially those using genomic sequencing. RESULTS:
We have created refget, a Global Alliance for Genomics and Health API specification to access reference sequences and sub-sequences using an identifier derived from the sequence itself. We present four reference implementations across in-house and cloud infrastructure, a compliance suite and a web report used to ensure specification conformity across implementations. AVAILABILITY AND IMPLEMENTATION The refget specification can be found at https//w3id.org/ga4gh/refget. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Base de dados:
MEDLINE
Assunto principal:
Software
/
Genômica
Idioma:
En
Ano de publicação:
2021
Tipo de documento:
Article