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Storing and analyzing a genome on a blockchain.
Gürsoy, Gamze; Brannon, Charlotte M; Ni, Eric; Wagner, Sarah; Khanna, Amol; Gerstein, Mark.
Afiliação
  • Gürsoy G; Program in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
  • Brannon CM; Department of Molecular Biophysics and Biochemistry, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
  • Ni E; Current Address: Department of Biomedical Informatics, Columbia University, New York, NY, USA.
  • Wagner S; Current Address: New York Genome Center, New York, NY, USA.
  • Khanna A; Program in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
  • Gerstein M; Department of Molecular Biophysics and Biochemistry, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
Genome Biol ; 23(1): 134, 2022 06 29.
Article em En | MEDLINE | ID: mdl-35765079
There are major efforts underway to make genome sequencing a routine part of clinical practice. A critical barrier to these is achieving practical solutions for data ownership and integrity. Blockchain provides solutions to these challenges in other realms, such as finance. However, its use in genomics is stymied due to the difficulty in storing large-scale data on-chain, slow transaction speeds, and limitations on querying. To overcome these roadblocks, we developed a private blockchain network to store genomic variants and reference-aligned reads on-chain. It uses nested database indexing with an accompanying tool suite to rapidly access and analyze the data.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Blockchain Idioma: En Ano de publicação: 2022 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Blockchain Idioma: En Ano de publicação: 2022 Tipo de documento: Article