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Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer.
Paggeot, Lisa X; DeBiasse, Melissa B; Escalona, Merly; Fairbairn, Colin; Marimuthu, Mohan P A; Nguyen, Oanh; Sahasrabudhe, Ruta; Dawson, Michael N.
Afiliação
  • Paggeot LX; Department of Life & Environmental Sciences, University of California, Merced, Merced, CA 95343, United States.
  • DeBiasse MB; Department of Life & Environmental Sciences, University of California, Merced, Merced, CA 95343, United States.
  • Escalona M; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, United States.
  • Fairbairn C; Ecology & Evolutionary Biology Department, University of Santa Cruz, 1156 High St, Santa Cruz, CA 95064, United States.
  • Marimuthu MPA; DNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis, Davis, CA 95616, United States.
  • Nguyen O; DNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis, Davis, CA 95616, United States.
  • Sahasrabudhe R; DNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis, Davis, CA 95616, United States.
  • Dawson MN; Department of Life & Environmental Sciences, University of California, Merced, Merced, CA 95343, United States.
J Hered ; 113(6): 681-688, 2022 11 30.
Article em En | MEDLINE | ID: mdl-35947871
ABSTRACT
The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Mytilus Limite: Animals País como assunto: America do norte Idioma: En Ano de publicação: 2022 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Mytilus Limite: Animals País como assunto: America do norte Idioma: En Ano de publicação: 2022 Tipo de documento: Article