Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis.
bioRxiv
; 2023 Apr 06.
Article
em En
| MEDLINE
| ID: mdl-37066251
ABSTRACT
We present Genomics to Notebook (g2nb), an environment that combines the JupyterLab notebook system with widely-used bioinformatics platforms. Galaxy, GenePattern, and the JavaScript versions of IGV and Cytoscape are currently available within g2nb. The analyses and visualizations within those platforms are presented as cells in a notebook, making thousands of genomics methods available within the notebook metaphor and allowing notebooks to contain workflows utilizing multiple software packages on remote servers, all without the need for programming. The g2nb environment is, to our knowledge, the only notebook-based system that incorporates multiple bioinformatics analysis platforms into a notebook interface.
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MEDLINE
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En
Ano de publicação:
2023
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Article