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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems.
Lombard, Fabien; Bourdin, Guillaume; Pesant, Stéphane; Agostini, Sylvain; Baudena, Alberto; Boissin, Emilie; Cassar, Nicolas; Clampitt, Megan; Conan, Pascal; Da Silva, Ophélie; Dimier, Céline; Douville, Eric; Elineau, Amanda; Fin, Jonathan; Flores, J Michel; Ghiglione, Jean-François; Hume, Benjamin C C; Jalabert, Laetitia; John, Seth G; Kelly, Rachel L; Koren, Ilan; Lin, Yajuan; Marie, Dominique; McMinds, Ryan; Mériguet, Zoé; Metzl, Nicolas; Paz-García, David A; Pedrotti, Maria Luiza; Poulain, Julie; Pujo-Pay, Mireille; Ras, Joséphine; Reverdin, Gilles; Romac, Sarah; Rouan, Alice; Röttinger, Eric; Vardi, Assaf; Voolstra, Christian R; Moulin, Clémentine; Iwankow, Guillaume; Banaigs, Bernard; Bowler, Chris; de Vargas, Colomban; Forcioli, Didier; Furla, Paola; Galand, Pierre E; Gilson, Eric; Reynaud, Stéphanie; Sunagawa, Shinichi; Sullivan, Matthew B; Thomas, Olivier P.
Afiliação
  • Lombard F; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France. fabien.lombard@imev-mer.fr.
  • Bourdin G; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 75000, Paris, France. fabien.lombard@imev-mer.fr.
  • Pesant S; Institut Universitaire de France, 75231, Paris, France. fabien.lombard@imev-mer.fr.
  • Agostini S; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Baudena A; School of Marine Sciences, University of Maine, Orono, Maine, 04469, USA.
  • Boissin E; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
  • Cassar N; Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan.
  • Clampitt M; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Conan P; PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.
  • Da Silva O; Nicholas School of the Environment, Duke University, Durham, NC, USA.
  • Dimier C; Laboratoire des Sciences de l'Environnement Marin, UMR 6539 UBO/CNRS/IRD/IFREMER, Institut Universitaire Européen de la Mer, Brest, France.
  • Douville E; Université Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
  • Elineau A; Université Côte d'Azur, Institut Fédératif de Recherche - Ressources Marines (IFR MARRES), Nice, France.
  • Fin J; LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Nice, Monaco.
  • Flores JM; Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, 66650, Banyuls Sur Mer, France.
  • Ghiglione JF; Sorbonne Université, CNRS, OSU STAMAR - UAR2017, 75252 Paris, France.
  • Hume BCC; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Jalabert L; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • John SG; Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France.
  • Kelly RL; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Koren I; Laboratoire LOCEAN/IPSL, Sorbonne Université-CNRS-IRD-MNHN, Paris, 75005, France.
  • Lin Y; Weizmann Institute of Science, Department of Earth and Planetary Sciences, Rehovot, Israel.
  • Marie D; Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, 66650, Banyuls Sur Mer, France.
  • McMinds R; Department of Biology, University of Konstanz, Konstanz, Germany.
  • Mériguet Z; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Metzl N; Department of Earth Science, University of Southern California, Los Angeles, CA, USA.
  • Paz-García DA; Department of Earth Science, University of Southern California, Los Angeles, CA, USA.
  • Pedrotti ML; Weizmann Institute of Science, Department of Earth and Planetary Sciences, Rehovot, Israel.
  • Poulain J; Nicholas School of the Environment, Duke University, Durham, NC, USA.
  • Pujo-Pay M; Laboratoire des Sciences de l'Environnement Marin, UMR 6539 UBO/CNRS/IRD/IFREMER, Institut Universitaire Européen de la Mer, Brest, France.
  • Ras J; Environmental Research Center, Duke Kunshan University, Kunshan, China.
  • Reverdin G; Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, AD2M, Roscoff, France.
  • Romac S; Université Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
  • Rouan A; Université Côte d'Azur, Maison de la Modélisation, de la Simulation et des Interactions (MSI), Nice, France.
  • Röttinger E; Department of Microbiology, Oregon State University, Corvallis, OR, USA.
  • Vardi A; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Voolstra CR; Laboratoire LOCEAN/IPSL, Sorbonne Université-CNRS-IRD-MNHN, Paris, 75005, France.
  • Moulin C; Centro de Investigaciones Biológicas del Noroeste (CIBNOR), La Paz, Baja California Sur, 23096, México.
  • Iwankow G; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Banaigs B; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
  • Bowler C; Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, 66650, Banyuls Sur Mer, France.
  • de Vargas C; Sorbonne Université, Laboratoire d'Océanographie de Villefranche, UMR 7093, CNRS, Institut de la Mer de Villefranche, 06230, Villefranche sur mer, France.
  • Forcioli D; Laboratoire LOCEAN/IPSL, Sorbonne Université-CNRS-IRD-MNHN, Paris, 75005, France.
  • Furla P; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 75000, Paris, France.
  • Galand PE; Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, AD2M, Roscoff, France.
  • Gilson E; Université Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
  • Reynaud S; Université Côte d'Azur, Institut Fédératif de Recherche - Ressources Marines (IFR MARRES), Nice, France.
  • Sunagawa S; LIA ROPSE, Laboratoire International Associé Université Côte d'Azur - Centre Scientifique de Monaco, Nice, Monaco.
  • Sullivan MB; Université Côte d'Azur, CNRS, INSERM, Institute for Research on Cancer and Aging, Nice (IRCAN), Nice, France.
  • Thomas OP; Université Côte d'Azur, Institut Fédératif de Recherche - Ressources Marines (IFR MARRES), Nice, France.
Sci Data ; 10(1): 324, 2023 06 01.
Article em En | MEDLINE | ID: mdl-37264023
ABSTRACT
The Tara Pacific expedition (2016-2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Antozoários / Recifes de Corais Limite: Animals Idioma: En Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Antozoários / Recifes de Corais Limite: Animals Idioma: En Ano de publicação: 2023 Tipo de documento: Article