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Domain generalization across tumor types, laboratories, and species - Insights from the 2022 edition of the Mitosis Domain Generalization Challenge.
Aubreville, Marc; Stathonikos, Nikolas; Donovan, Taryn A; Klopfleisch, Robert; Ammeling, Jonas; Ganz, Jonathan; Wilm, Frauke; Veta, Mitko; Jabari, Samir; Eckstein, Markus; Annuscheit, Jonas; Krumnow, Christian; Bozaba, Engin; Çayir, Sercan; Gu, Hongyan; Chen, Xiang 'Anthony'; Jahanifar, Mostafa; Shephard, Adam; Kondo, Satoshi; Kasai, Satoshi; Kotte, Sujatha; Saipradeep, V G; Lafarge, Maxime W; Koelzer, Viktor H; Wang, Ziyue; Zhang, Yongbing; Yang, Sen; Wang, Xiyue; Breininger, Katharina; Bertram, Christof A.
Afiliação
  • Aubreville M; Technische Hochschule Ingolstadt, Ingolstadt, Germany. Electronic address: marc@deepmicroscopy.org.
  • Stathonikos N; Pathology Department, UMC Utrecht, The Netherlands.
  • Donovan TA; Department of Anatomic Pathology, The Schwarzman Animal Medical Center, NY, USA.
  • Klopfleisch R; Institute of Veterinary Pathology, Freie Universität Berlin, Berlin, Germany.
  • Ammeling J; Technische Hochschule Ingolstadt, Ingolstadt, Germany.
  • Ganz J; Technische Hochschule Ingolstadt, Ingolstadt, Germany.
  • Wilm F; Pattern Recognition Lab, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany; Department Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
  • Veta M; Computational Pathology Group, Radboud UMC Nijmegen, The Netherlands.
  • Jabari S; Institute of Neuropathology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
  • Eckstein M; Institute of Pathology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nünberg, Erlangen, Germany.
  • Annuscheit J; University of Applied Sciences (HTW) Berlin, Berlin, Germany.
  • Krumnow C; University of Applied Sciences (HTW) Berlin, Berlin, Germany.
  • Bozaba E; Artificial Intelligence Research Team, Virasoft Corporation, NY, USA.
  • Çayir S; Artificial Intelligence Research Team, Virasoft Corporation, NY, USA.
  • Gu H; University of California, Los Angeles, USA.
  • Chen X'; University of California, Los Angeles, USA.
  • Jahanifar M; University of Warwick, United Kingdom.
  • Shephard A; University of Warwick, United Kingdom.
  • Kondo S; Muroran Institute of Technology, Muroran, Japan.
  • Kasai S; Niigata University of Health and Welfare, Niigata, Japan.
  • Kotte S; TCS Research, Tata Consultancy Services Ltd, Hyderabad, India.
  • Saipradeep VG; TCS Research, Tata Consultancy Services Ltd, Hyderabad, India.
  • Lafarge MW; Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Zurich, Zurich, Switzerland.
  • Koelzer VH; Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Zurich, Zurich, Switzerland.
  • Wang Z; Harbin Institute of Technology, Shenzhen, China.
  • Zhang Y; Harbin Institute of Technology, Shenzhen, China.
  • Yang S; College of Biomedical Engineering, Sichuan University, Chengdu, China.
  • Wang X; Department of Radiation Oncology, Stanford University School of Medicine, Palo Alto, USA.
  • Breininger K; Department Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
  • Bertram CA; Institute of Pathology, University of Veterinary Medicine, Vienna, Austria.
Med Image Anal ; 94: 103155, 2024 May.
Article em En | MEDLINE | ID: mdl-38537415
ABSTRACT
Recognition of mitotic figures in histologic tumor specimens is highly relevant to patient outcome assessment. This task is challenging for algorithms and human experts alike, with deterioration of algorithmic performance under shifts in image representations. Considerable covariate shifts occur when assessment is performed on different tumor types, images are acquired using different digitization devices, or specimens are produced in different laboratories. This observation motivated the inception of the 2022 challenge on MItosis Domain Generalization (MIDOG 2022). The challenge provided annotated histologic tumor images from six different domains and evaluated the algorithmic approaches for mitotic figure detection provided by nine challenge participants on ten independent domains. Ground truth for mitotic figure detection was established in two ways a three-expert majority vote and an independent, immunohistochemistry-assisted set of labels. This work represents an overview of the challenge tasks, the algorithmic strategies employed by the participants, and potential factors contributing to their success. With an F1 score of 0.764 for the top-performing team, we summarize that domain generalization across various tumor domains is possible with today's deep learning-based recognition pipelines. However, we also found that domain characteristics not present in the training set (feline as new species, spindle cell shape as new morphology and a new scanner) led to small but significant decreases in performance. When assessed against the immunohistochemistry-assisted reference standard, all methods resulted in reduced recall scores, with only minor changes in the order of participants in the ranking.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Laboratórios / Mitose Limite: Animals / Humans Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Laboratórios / Mitose Limite: Animals / Humans Idioma: En Ano de publicação: 2024 Tipo de documento: Article