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DNA Isolation Long-Read Genomic Sequencing in Ctenophores.
Moraga Amador, David; Kohn, Andrea B; Bobkova, Yelena; Panayotova, Nedka G; Moroz, Leonid L.
Afiliação
  • Moraga Amador D; Interdisciplinary Center for Biotechnology (ICBR), University of Florida, Gainesville, FL, USA. moraga@ufl.edu.
  • Kohn AB; Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, USA.
  • Bobkova Y; Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, USA.
  • Panayotova NG; Interdisciplinary Center for Biotechnology (ICBR), University of Florida, Gainesville, FL, USA.
  • Moroz LL; Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, USA. moroz@whitney.ufl.edu.
Methods Mol Biol ; 2757: 185-200, 2024.
Article em En | MEDLINE | ID: mdl-38668967
ABSTRACT
Long-read sequencing has proven the necessity for high-quality genomic assemblies of reference species, including enigmatic ctenophores. Obtaining high-molecular-weight genomic DNA is pivotal to this process and has proven highly problematic for many species. Here, we discuss different methodologies for gDNA isolation and present a protocol for isolating gDNA for several members of the phylum Ctenophora. Specifically, we describe a Pacific Biosciences library construction method used in conjunction with gDNA isolation methods that have proven successful in obtaining high-quality genomic assemblies in ctenophores.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: DNA / Análise de Sequência de DNA / Genômica / Ctenóforos Limite: Animals Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: DNA / Análise de Sequência de DNA / Genômica / Ctenóforos Limite: Animals Idioma: En Ano de publicação: 2024 Tipo de documento: Article