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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
Eloe-Fadrosh, Emiley A; Mungall, Christopher J; Miller, Mark Andrew; Smith, Montana; Patil, Sujay Sanjeev; Kelliher, Julia M; Johnson, Leah Y D; Rodriguez, Francisca E; Chain, Patrick S G; Hu, Bin; Thornton, Michael B; McCue, Lee Ann; McHardy, Alice Carolyn; Harris, Nomi L; Reddy, T B K; Mukherjee, Supratim; Hunter, Christopher I; Walls, Ramona; Schriml, Lynn M.
Afiliação
  • Eloe-Fadrosh EA; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. eaeloefadrosh@lbl.gov.
  • Mungall CJ; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Miller MA; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Smith M; Pacific Northwest National Laboratory, Richland, WA, USA.
  • Patil SS; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Kelliher JM; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
  • Johnson LYD; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
  • Rodriguez FE; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
  • Chain PSG; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
  • Hu B; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
  • Thornton MB; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • McCue LA; Pacific Northwest National Laboratory, Richland, WA, USA.
  • McHardy AC; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.
  • Harris NL; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Reddy TBK; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Mukherjee S; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Hunter CI; GigaScience Press, Hong Kong Science Park, Pak Shek Kok, New Territories, Hong Kong.
  • Walls R; Critical Path Institute, Tucson, AZ, USA.
  • Schriml LM; University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, MD, USA.
Methods Mol Biol ; 2802: 587-609, 2024.
Article em En | MEDLINE | ID: mdl-38819573
ABSTRACT
Comparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimum Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate the use of the GSC's MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Genômica / Metagenoma / Metagenômica Idioma: En Ano de publicação: 2024 Tipo de documento: Article
Texto completo
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XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Genômica / Metagenoma / Metagenômica Idioma: En Ano de publicação: 2024 Tipo de documento: Article