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Genome and tissue-specific transcriptomes of the large-polyp coral, Fimbriaphyllia (Euphyllia) ancora: a recipe for a coral polyp.
Shikina, Shinya; Yoshioka, Yuki; Chiu, Yi-Ling; Uchida, Taiga; Chen, Emma; Cheng, Yin-Chu; Lin, Tzu-Chieh; Chu, Yu-Ling; Kanda, Miyuki; Kawamitsu, Mayumi; Fujie, Manabu; Takeuchi, Takeshi; Zayasu, Yuna; Satoh, Noriyuki; Shinzato, Chuya.
Afiliação
  • Shikina S; Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, Taiwan. shikina@mail.ntou.edu.tw.
  • Yoshioka Y; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan. shikina@mail.ntou.edu.tw.
  • Chiu YL; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
  • Uchida T; Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, Taiwan.
  • Chen E; Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan.
  • Cheng YC; Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, Taiwan.
  • Lin TC; Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, Taiwan.
  • Chu YL; Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, Taiwan.
  • Kanda M; Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, Taiwan.
  • Kawamitsu M; DNA Sequencing Center Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
  • Fujie M; DNA Sequencing Center Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
  • Takeuchi T; DNA Sequencing Center Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
  • Zayasu Y; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
  • Satoh N; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
  • Shinzato C; Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.
Commun Biol ; 7(1): 899, 2024 Jul 24.
Article em En | MEDLINE | ID: mdl-39048698
ABSTRACT
Coral polyps are composed of four tissues; however, their characteristics are largely unexplored. Here we report biological characteristics of tentacles (Te), mesenterial filaments (Me), body wall (Bo), and mouth with pharynx (MP), using comparative genomic, morpho-histological, and transcriptomic analyses of the large-polyp coral, Fimbriaphyllia ancora. A draft F. ancora genome assembly of 434 Mbp was created. Morpho-histological and transcriptomic characterization of the four tissues showed that they have distinct differences in structure, primary cellular composition, and transcriptional profiles. Tissue-specific, highly expressed genes (HEGs) of Te are related to biological defense, predation, and coral-algal symbiosis. Me expresses multiple digestive enzymes, whereas Bo expresses innate immunity and biomineralization-related molecules. Many receptors for neuropeptides and neurotransmitters are expressed in MP. This dataset and new insights into tissue functions will facilitate a deeper understanding of symbiotic biology, immunology, biomineralization, digestive biology, and neurobiology in corals.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Genoma / Antozoários / Transcriptoma Limite: Animals Idioma: En Ano de publicação: 2024 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Genoma / Antozoários / Transcriptoma Limite: Animals Idioma: En Ano de publicação: 2024 Tipo de documento: Article