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ACEGEN: Reinforcement Learning of Generative Chemical Agents for Drug Discovery.
Bou, Albert; Thomas, Morgan; Dittert, Sebastian; Navarro, Carles; Majewski, Maciej; Wang, Ye; Patel, Shivam; Tresadern, Gary; Ahmad, Mazen; Moens, Vincent; Sherman, Woody; Sciabola, Simone; De Fabritiis, Gianni.
Afiliação
  • Bou A; Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), C Dr. Aiguader 88, 08003 Barcelona, Spain.
  • Thomas M; Acellera Labs, C Dr. Trueta 183, 08005, Barcelona, Spain.
  • Dittert S; Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), C Dr. Aiguader 88, 08003 Barcelona, Spain.
  • Navarro C; Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), C Dr. Aiguader 88, 08003 Barcelona, Spain.
  • Majewski M; Acellera Labs, C Dr. Trueta 183, 08005, Barcelona, Spain.
  • Wang Y; Acellera Labs, C Dr. Trueta 183, 08005, Barcelona, Spain.
  • Patel S; Biogen Research and Development, 225 Binney Street, Cambridge, Massachusetts 02142, United States.
  • Tresadern G; Psivant Therapeutics, 451 D Street, Boston, Massachusetts 02210, United States.
  • Ahmad M; In Silico Discovery, Janssen Research & Development, Janssen Pharmaceutica N. V., Turnhoutseweg 30, B-2340 Beerse, Belgium.
  • Moens V; In Silico Discovery, Janssen Research & Development, Janssen Pharmaceutica N. V., Turnhoutseweg 30, B-2340 Beerse, Belgium.
  • Sherman W; PyTorch Team, Meta, 11-21 Canal Reach, London, N1C 4DB, United Kingdom.
  • Sciabola S; Psivant Therapeutics, 451 D Street, Boston, Massachusetts 02210, United States.
  • De Fabritiis G; Biogen Research and Development, 225 Binney Street, Cambridge, Massachusetts 02142, United States.
J Chem Inf Model ; 64(15): 5900-5911, 2024 Aug 12.
Article em En | MEDLINE | ID: mdl-39092857
ABSTRACT
In recent years, reinforcement learning (RL) has emerged as a valuable tool in drug design, offering the potential to propose and optimize molecules with desired properties. However, striking a balance between capabilities, flexibility, reliability, and efficiency remains challenging due to the complexity of advanced RL algorithms and the significant reliance on specialized code. In this work, we introduce ACEGEN, a comprehensive and streamlined toolkit tailored for generative drug design, built using TorchRL, a modern RL library that offers thoroughly tested reusable components. We validate ACEGEN by benchmarking against other published generative modeling algorithms and show comparable or improved performance. We also show examples of ACEGEN applied in multiple drug discovery case studies. ACEGEN is accessible at https//github.com/acellera/acegen-open and available for use under the MIT license.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Descoberta de Drogas Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Descoberta de Drogas Idioma: En Ano de publicação: 2024 Tipo de documento: Article