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The genome sequence of the Violet Carpenter Bee, Xylocopa violacea (Linnaeus, 1785): a hymenopteran species undergoing range expansion.
Nash, Will J; Man, Angela; McTaggart, Seanna; Baker, Kendall; Barker, Tom; Catchpole, Leah; Durrant, Alex; Gharbi, Karim; Irish, Naomi; Kaithakottil, Gemy; Ku, Debby; Providence, Aaliyah; Shaw, Felix; Swarbreck, David; Watkins, Chris; McCartney, Ann M; Formenti, Giulio; Mouton, Alice; Vella, Noel; von Reumont, Björn M; Vella, Adriana; Haerty, Wilfried.
Afiliação
  • Nash WJ; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK. will.nash@earlham.ac.uk.
  • Man A; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • McTaggart S; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Baker K; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Barker T; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Catchpole L; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Durrant A; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Gharbi K; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Irish N; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Kaithakottil G; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Ku D; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Providence A; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Shaw F; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Swarbreck D; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • Watkins C; The Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
  • McCartney AM; Genomics Institute, University of California, Santa Cruz, CA, 95060, USA.
  • Formenti G; The Vertebrate Genome Laboratory, The Rockefeller University, 1240 York Ave, New York, NY, 10065, USA.
  • Mouton A; Department of Biology, University of Florence, Sesto Fiorentino, Italy.
  • Vella N; Department of Biology, University of Florence, Sesto Fiorentino, Italy.
  • von Reumont BM; InBios - Conservation Genetics Laboratory, University of Liege, Chemin de la Vallee 4, 4000, Liege, Belgium.
  • Vella A; SEED - Departement des sciences et gestion de l'environnement, University of Liege, Chemin de la Vallee 4, 4000, Liege, Belgium.
  • Haerty W; Conservation Biology Research Group, Biology Department, University of Malta, Msida, MSD 2080, Malta.
Heredity (Edinb) ; 2024 Sep 16.
Article em En | MEDLINE | ID: mdl-39278996
ABSTRACT
We present a reference genome assembly from an individual male Violet Carpenter Bee (Xylocopa violacea, Linnaeus 1758). The assembly is 1.02 gigabases in span. 48% of the assembly is scaffolded into 17 pseudo-chromosomal units. The mitochondrial genome has also been assembled and is 21.8 kilobases in length. The genome is highly repetitive, likely representing a highly heterochromatic architecture expected of bees from the genus Xylocopa. We also use an evidence-based methodology to annotate 10,152 high confidence coding genes. This genome was sequenced as part of the pilot project of the European Reference Genome Atlas (ERGA) and represents an important addition to the genomic resources available for Hymenoptera.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2024 Tipo de documento: Article
Texto completo
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2024 Tipo de documento: Article