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1.
Sensors (Basel) ; 22(7)2022 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-35408066

RESUMO

Recent developments in telecommunication world have allowed customers to share the storage and processing capabilities of their devices by providing services through fast and reliable connections. This evolution, however, requires building an incentive system to encourage information exchange in future telecommunication networks. In this study, we propose a mechanism to share bandwidth and processing resources among subscribers using smart contracts and a blockchain-based incentive mechanism, which is used to encourage subscribers to share their resources. We demonstrate the applicability of the proposed method through two use cases: (i) exchanging multimedia data and (ii) CPU sharing. We propose a universal user-to-user and user-to-operator payment system, named TelCash, which provides a solution for current roaming problems and establishes trust in X2X communications. TelCash has a great potential in solving the charges of roaming and reputation management (reliance) problems in telecommunications sector. We also show, by using a simulation study, that encouraging D2D communication leads to a significant increase in content quality, and there is a threshold after which downloading from base station is dramatically cut down and can be kept as low as 10%.

2.
J Chem Inf Model ; 59(11): 4654-4662, 2019 11 25.
Artigo em Inglês | MEDLINE | ID: mdl-31596082

RESUMO

Understanding the interaction between drug molecules and proteins is one of the main challenges in drug design. Several tools have been developed recently to decrease the complexity of the process. Artificial intelligence and machine learning methods offer promising results in predicting the binding affinities. It becomes possible to do accurate predictions by using the known protein-ligand interactions. In this study, the electrostatic potential values extracted from 3-dimensional grid cubes of the drug-protein binding sites are used for predicting binding affinities of related complexes. A new algorithm with a dynamic feature selection method was implemented, which is derived from Compressed Images For Affinity Prediction (CIFAP) study, to predict binding affinities of Checkpoint Kinase 1 and Caspase 3 inhibitors.


Assuntos
Inibidores de Caspase/farmacologia , Descoberta de Drogas/métodos , Inibidores de Proteínas Quinases/farmacologia , Inteligência Artificial , Sítios de Ligação , Caspase 3/química , Caspase 3/metabolismo , Inibidores de Caspase/química , Quinase 1 do Ponto de Checagem/antagonistas & inibidores , Quinase 1 do Ponto de Checagem/química , Quinase 1 do Ponto de Checagem/metabolismo , Desenho de Fármacos , Humanos , Imageamento Tridimensional , Ligantes , Aprendizado de Máquina , Simulação de Acoplamento Molecular , Ligação Proteica , Inibidores de Proteínas Quinases/química , Eletricidade Estática
3.
J Mol Recognit ; 30(11)2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-28620979

RESUMO

Investigation of protein-ligand interactions obtained from experiments has a crucial part in the design of newly discovered and effective drugs. Analyzing the data extracted from known interactions could help scientists to predict the binding affinities of promising ligands before conducting experiments. The objective of this study is to advance the CIFAP (compressed images for affinity prediction) method, which is relevant to a protein-ligand model, identifying 2D electrostatic potential images by separating the binding site of protein-ligand complexes and using the images for predicting the computational affinity information represented by pIC50 values. The CIFAP method has 2 phases, namely, data modeling and prediction. In data modeling phase, the separated 3D structure of the binding pocket with the ligand inside is fitted into an electrostatic potential grid box, which is then compressed through 3 orthogonal directions into three 2D images for each protein-ligand complex. Sequential floating forward selection technique is performed for acquiring prediction patterns from the images. In the prediction phase, support vector regression (SVR) and partial least squares regression are used for testing the quality of the CIFAP method for predicting the binding affinity of 45 CHK1 inhibitors derived from 2-aminothiazole-4-carboxamide. The results show that the CIFAP method using both support vector regression and partial least squares regression is very effective for predicting the binding affinities of CHK1-ligand complexes with low-error values and high correlation. As a future work, the results could be improved by working on the pose of the ligands inside the grid.


Assuntos
Quinase 1 do Ponto de Checagem/antagonistas & inibidores , Modelos Moleculares , Inibidores de Proteínas Quinases/química , Inibidores de Proteínas Quinases/farmacologia , Tiazóis/farmacologia , Quinase 1 do Ponto de Checagem/química , Humanos , Imageamento Tridimensional , Concentração Inibidora 50 , Análise dos Mínimos Quadrados , Máquina de Vetores de Suporte , Tiazóis/química
4.
J Enzyme Inhib Med Chem ; 30(5): 809-15, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25578823

RESUMO

The aim of this study is to propose an improved computational methodology, which is called Compressed Images for Affinity Prediction-2 (CIFAP-2) to predict binding affinities of structurally related protein-ligand complexes. CIFAP-2 method is established based on a protein-ligand model from which computational affinity information is obtained by utilizing 2D electrostatic potential images determined for the binding site of protein-ligand complexes. The quality of the prediction of the CIFAP-2 algorithm was tested using partial least squares regression (PLSR) as well as support vector regression (SVR) and adaptive neuro-fuzzy inference system (ANFIS), which are highly promising prediction methods in drug design. CIFAP-2 was applied on a protein-ligand complex system involving Caspase 3 (CASP3) and its 35 inhibitors possessing a common isatin sulfonamide pharmacophore. As a result, PLSR affinity prediction for the CASP3-ligand complexes gave rise to the most consistent information with reported empirical binding affinities (pIC(50)) of the CASP3 inhibitors.


Assuntos
Caspase 3/química , Caspase 3/metabolismo , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Aprendizado de Máquina , Sulfonamidas/química , Sulfonamidas/farmacologia , Relação Dose-Resposta a Droga , Humanos , Ligantes , Estrutura Molecular , Análise de Regressão , Relação Estrutura-Atividade
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