Discovering the effective connectome of the brain with dynamic Bayesian DAG learning.

Understanding the complex mechanisms of the brain can be unraveled by extracting the Dynamic Effective Connectome (DEC). Recently, score-based Directed Acyclic Graph (DAG) discovery methods have shown significant improvements in extracting the causal structure and inferring effective connectivity. However, learning DEC through these methods still faces two main challenges: one with the fundamental impotence of high-dimensional dynamic DAG discovery methods and the other with the low quality of fMRI data. In this paper, we introduce Bayesian Dynamic DAG learning with M-matrices Acyclicity characterization (BDyMA) method to address the challenges in discovering DEC. The presented dynamic DAG enables us to discover direct feedback loop edges as well. Leveraging an unconstrained framework in the BDyMA method leads to more accurate results in detecting high-dimensional networks, achieving sparser outcomes, making it particularly suitable for extracting DEC. Additionally, the score function of the BDyMA method allows the incorporation of prior knowledge into the process of dynamic causal discovery which further enhances the accuracy of results. Comprehensive simulations on synthetic data and experiments on Human Connectome Project (HCP) data demonstrate that our method can handle both of the two main challenges, yielding more accurate and reliable DEC compared to state-of-the-art and traditional methods. Additionally, we investigate the trustworthiness of DTI data as prior knowledge for DEC discovery and show the improvements in DEC discovery when the DTI data is incorporated into the process.

Functional Networks Abnormalities in Autism Spectrum Disorder: Age-Related Hypo and Hyper Connectivity.

Autism spectrum disorder (ASD) is a developmental disorder characterized by defects in social interaction. The past functional connectivity studies using resting-state fMRI have found both patterns of hypo-connectivity and hyper-connectivity in ASD and proposed the age as an important factor on functional connectivity disorders. However, this influence is not clearly characterized yet. Previous studies have often examined the functional connectivity disorders in particular brain regions in an age group or a mixture of age groups. The present study compares whole-brain within-connectivity and between-connectivity between ASD individuals and typically developing (TD) controls in three age groups including children (< 11 years), adolescents (11-18 years), and adults (> 18 years), each comprising 21 ASD individuals and 21 TD controls. The age groups were matched for age, Full IQ, and gender. Independent component analysis and dual regression were used to investigate within-connectivity. The full and partial correlations between ICs were used to investigate between-connectivity. Examination of the within-connectivity showed hyper-connectivity, especially in cerebellum and brainstem in ASD children but both hyper/hypo connectivity in adolescents and ASD adults. In ASD children, difference in the between-connectivity among default mode network (DMN), salience-executive network and fronto-parietal network were observed. There was also a negative correlation between DMN and temporal network. Full correlation comparison between ASD adolescents and TD individuals showed significant differences between cerebellum and DMN. Our results supported just the hyper-connectivity in childhood, but both hypo and hyper-connectivity after childhood and hypothesized that abnormal resting connections in ASD exist in the regions of the brain known to be involved in social cognition.

Temporal dynamics of visual category representation in the macaque inferior temporal cortex.

Object categories are recognized at multiple levels of hierarchical abstractions. Psychophysical studies have shown a more rapid perceptual access to the mid-level category information (e.g., human faces) than the higher (superordinate; e.g., animal) or the lower (subordinate; e.g., face identity) level. Mid-level category members share many features, whereas few features are shared among members of different mid-level categories. To understand better the neural basis of expedited access to mid-level category information, we examined neural responses of the inferior temporal (IT) cortex of macaque monkeys viewing a large number of object images. We found an earlier representation of mid-level categories in the IT population and single-unit responses compared with superordinate- and subordinate-level categories. The short-latency representation of mid-level category information shows that visual cortex first divides the category shape space at its sharpest boundaries, defined by high/low within/between-group similarity. This short-latency, mid-level category boundary map may be a prerequisite for representation of other categories at more global and finer scales.

A sex-dependent computer-aided diagnosis system for autism spectrum disorder using connectivity of resting-state fMRI.

Objective.Autism spectrum disorder (ASD) is a prevalent neurodevelopmental disorder with the main symptoms of social communication disabilities. ASD is more than four times more common among males than females. The diagnosis of ASD is currently a subjective process by experts the same for males and females. Various studies have suggested the use of brain connectivity features for the diagnosis of ASD. Also, sex-related biological factors have been shown to play a role in ASD etiology and influence the brain connectivity. Therefore, proposing an accurate computer-aided diagnosis system (CADS) for ASD which considers the sex of subjects seems necessary. In this study, we present a sex-dependent connectivity-based CADS for ASD using resting-state functional magnetic resonance imaging. The proposed CADS classifies ASD males from normal males, and ASD females from normal females.Approach.After data preprocessing, group independent component analysis (GICA) was applied to obtain the resting-state networks (RSNs) followed by applying dual-regression to obtain the time course of each RSN for each subject. Afterwards, functional connectivity measures of full correlation and partial correlation and the effective connectivity measure of bivariate Granger causality were computed between time series of RSNs. To consider the role of sex differences in the classification process, male, female, and mixed groups were taken into account, and feature selection and classification were designed for each sex group separately. At the end, the classification accuracy was computed for each sex group.Main results.In the female group, a classification accuracy of 93.3% was obtained using full correlation while in the male group, a classification accuracy of 86.7% was achieved using both full correlation and bivariate Granger causality. Also, in the mixed group, a classification accuracy of 83.3% was obtained using full correlation.Significance.This supports the importance of considering sex in diagnosing ASD patients from normal controls.

Component-related BOLD response to localize epileptic focus using simultaneous EEG-fMRI recordings at 3T.

BACKGROUND: Simultaneous EEG-fMRI experiments record spatiotemporal dynamics of epileptic activity. A shortcoming of spike-based EEG-fMRI studies is their inability to provide information about behavior of epileptic generators when no spikes are visible. NEW METHOD: We extract time series of epileptic components identified on EEG and fit them with Generalized Linear Model (GLM) model. This allows a precise and reliable localization of epileptic foci in addition to predicting generator's behavior. The proposed method works in the source domain and delineates generators considering spatial correlation between spike template and candidate components in addition to patient's medical records. RESULTS: The proposed method was applied on 20 patients with refractory epilepsy and 20 age- and gender-matched healthy controls. The identified components were examined statistically and threshold of localization accuracy was determined as 86% based on Receiver Operating Characteristic (ROC) curve analysis. Accuracy, sensitivity, and specificity were found to be 88%, 85%, and 95%, respectively. Contribution of EEG-fMRI and concordance between EEG and fMRI were also evaluated. Concordance was found in 19 patients and contribution in 17. COMPARISON WITH EXISTING METHODS: We compared the proposed method with conventional methods. Our comparisons showed superiority of the proposed method. In particular, when epileptogenic zone was located deep in the brain, the method outperformed existing methods. CONCLUSIONS: This study contributes substantially to increasing the yield of EEG-fMRI and presents a realistic estimate of the neural behavior of epileptic generators, to the best of our knowledge, for the first time in the literature.

A time local subset feature selection for prediction of sudden cardiac death from ECG signal.

Prediction of sudden cardiac death continues to gain universal attention as a promising approach to saving millions of lives threatened by sudden cardiac death (SCD). This study attempts to promote the literature from mere feature extraction analysis to developing strategies for manipulating the extracted features to target improvement of classification accuracy. To this end, a novel approach to local feature subset selection is applied using meticulous methodologies developed in previous studies of this team for extracting features from non-linear, time-frequency, and classical processes. We are therefore enabled to select features that differ from one another in each 1-min interval before the incident. Using the proposed algorithm, SCD can be predicted 12 min before the onset; thus, more propitious results are achieved. Additionally, through defining a utility function and employing statistical analysis, the alarm threshold has effectively been determined as 83%. Having selected the best combination of features, the two classes are classified using the multilayer perceptron (MLP) classifier. The most effective features would subsequently be discussed considering their prevalence in the rank-based selection. The results indicate the significant capacity of the proposed method for predicting SCD as well as selecting the appropriate processing method at any time before the incident. Graphical abstract ᅟ.

A study on expertise of agents and its effects on cooperative Q-learning.

Cooperation in learning (CL) can be realized in a multiagent system, if agents are capable of learning from both their own experiments and other agents' knowledge and expertise. Extra resources are exploited into higher efficiency and faster learning in CL as compared to that of individual learning (IL). In the real world, however, implementation of CL is not a straightforward task, in part due to possible differences in area of expertise (AOE). In this paper, reinforcement-learning homogenous agents are considered in an environment with multiple goals or tasks. As a result, they become expert in different domains with different amounts of expertness. Each agent uses a one-step Q-learning algorithm and is capable of exchanging its Q-table with those of its teammates. Two crucial questions are addressed in this paper: "How the AOE of an agent can be extracted?" and "How agents can improve their performance in CL by knowing their AOEs?" An algorithm is developed to extract the AOE based on state transitions as a gold standard from a behavioral point of view. Moreover, it is discussed that the AOE can be implicitly obtained through agents' expertness in the state level. Three new methods for CL through the combination of Q-tables are developed and examined for overall performance after CL. The performances of developed methods are compared with that of IL, strategy sharing (SS), and weighted SS (WSS). Obtained results show the superior performance of AOE-based methods as compared to that of existing CL methods, which do not use the notion of AOE. These results are very encouraging in support of the idea that "cooperation based on the AOE" performs better than the general CL methods.

Rapid face adaptation distributes representation in inferior-temporal cortex across time and neuronal dimensions.

Neuronal networks of the brain adapt their information processing according to the history of stimuli. Whereas most studies have linked adaptation to repetition suppression, recurrent connections within a network and disinhibition due to adaptation predict more complex response patterns. The main questions of this study are as follows: what is the effect of the selectivity of neurons on suppression/enhancement of neural responses? What are the consequences of adaptation on information representation in neural population and the temporal structure of response patterns? We studied rapid face adaptation using spiking activities of neurons in the inferior-temporal (IT) cortex. Investigating the responses of neurons, within a wide range from negative to positive face selectivity, showed that despite the peak amplitude suppression in highly positive selective neurons, responses were enhanced in most other neurons. This enhancement can be attributed to disinhibition due to adaptation. Delayed and distributed responses were observed for positive selective neurons. Principal component analysis of the IT population responses over time revealed that repetition of face stimuli resulted in temporal decorrelation of the network activity. The contributions of the main and higher neuronal dimensions were changed under an adaptation condition, where more neuronal dimensions were used to encode repeated face stimuli.

Automatic Recognition of Acute Myelogenous Leukemia in Blood Microscopic Images Using K-means Clustering and Support Vector Machine.

Acute myelogenous leukemia (AML) is a subtype of acute leukemia, which is characterized by the accumulation of myeloid blasts in the bone marrow. Careful microscopic examination of stained blood smear or bone marrow aspirate is still the most significant diagnostic methodology for initial AML screening and considered as the first step toward diagnosis. It is time-consuming and due to the elusive nature of the signs and symptoms of AML; wrong diagnosis may occur by pathologists. Therefore, the need for automation of leukemia detection has arisen. In this paper, an automatic technique for identification and detection of AML and its prevalent subtypes, i.e., M2-M5 is presented. At first, microscopic images are acquired from blood smears of patients with AML and normal cases. After applying image preprocessing, color segmentation strategy is applied for segmenting white blood cells from other blood components and then discriminative features, i.e., irregularity, nucleus-cytoplasm ratio, Hausdorff dimension, shape, color, and texture features are extracted from the entire nucleus in the whole images containing multiple nuclei. Images are classified to cancerous and noncancerous images by binary support vector machine (SVM) classifier with 10-fold cross validation technique. Classifier performance is evaluated by three parameters, i.e., sensitivity, specificity, and accuracy. Cancerous images are also classified into their prevalent subtypes by multi-SVM classifier. The results show that the proposed algorithm has achieved an acceptable performance for diagnosis of AML and its common subtypes. Therefore, it can be used as an assistant diagnostic tool for pathologists.

A Computational Approach towards Visual Object Recognition at Taxonomic Levels of Concepts.

It has been argued that concepts can be perceived at three main levels of abstraction. Generally, in a recognition system, object categories can be viewed at three levels of taxonomic hierarchy which are known as superordinate, basic, and subordinate levels. For instance, "horse" is a member of subordinate level which belongs to basic level of "animal" and superordinate level of "natural objects." Our purpose in this study is to take an investigation into visual features at each taxonomic level. We first present a recognition tree which is more general in terms of inclusiveness with respect to visual representation of objects. Then we focus on visual feature definition, that is, how objects from the same conceptual category can be visually represented at each taxonomic level. For the first level we define global features based on frequency patterns to illustrate visual distinctions among artificial and natural. In contrast, our approach for the second level is based on shape descriptors which are defined by recruiting moment based representation. Finally, we show how conceptual knowledge can be utilized for visual feature definition in order to enhance recognition of subordinate categories.

Differences in white matter reflect atypical developmental trajectory in autism: A Tract-based Spatial Statistics study.

Autism is a neurodevelopmental disorder in which white matter (WM) maturation is affected. We assessed WM integrity in 16 adolescents and 14 adults with high-functioning autism spectrum disorder (ASD) and in matched neurotypical controls (NT) using diffusion weighted imaging and Tract-based Spatial Statistics. Decreased fractional anisotropy (FA) was observed in adolescents with ASD in tracts involved in emotional face processing, language, and executive functioning, including the inferior fronto-occipital fasciculus and the inferior and superior longitudinal fasciculi. Remarkably, no differences in FA were observed between ASD and NT adults. We evaluated the effect of age on WM development across the entire age range. Positive correlations between FA values and age were observed in the right inferior fronto-occipital fasciculus, the left superior longitudinal fasciculus, the corpus callosum, and the cortical spinal tract of ASD participants, but not in NT participants. Our data underscore the dynamic nature of brain development in ASD, showing the presence of an atypical process of WM maturation, that appears to normalize over time and could be at the basis of behavioral improvements often observed in high-functioning autism.